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Sed0008686 (gene) of Chayote v1 genome

Gene IDSed0008686
OrganismSechium edule (Chayote v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationLG01:19605383..19606288
RNA-Seq ExpressionSed0008686
SyntenySed0008686
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
No hits found
TrEMBL top hitse value%identityAlignment
A0A5D3E4Z5 Retrovirus-related Pol polyprotein from transposon TNT 1-947.5e-0436.22Show/hide
Query:  HSYLENLRRHDYLPSTVADHENSKVPKIEQEYMASPI--NNNVNNSPSIIASPTSSVITQALEQYNHSPVNDIIVETITALEALPTENTALVRRSTRAHQ
        HS LEN      LP  + D        I  + +A PI  N N ++SP I A            + + +  N I     T    +P  N  + R+STR H+
Subjt:  HSYLENLRRHDYLPSTVADHENSKVPKIEQEYMASPI--NNNVNNSPSIIASPTSSVITQALEQYNHSPVNDIIVETITALEALPTENTALVRRSTRAHQ

Query:  PLSFLKDYHCHLVT-TTTPKSTTYVHP
        PL+FLKDYHCHL+T  + PK TT  HP
Subjt:  PLSFLKDYHCHLVT-TTTPKSTTYVHP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAATTTATTCATTCATATTTGGAAAATCTAAGACGACATGATTATTTGCCTTCCACAGTTGCAGACCATGAAAATTCGAAAGTTCCTAAGATCGAACAGGAATATAT
GGCCTCCCCTATTAACAATAATGTCAATAACTCACCTTCCATTATTGCTAGCCCTACTAGCTCAGTTATTACACAAGCTCTAGAACAATATAATCATTCTCCAGTAAATG
ATATTATTGTTGAGACAATTACTGCTTTAGAAGCTTTGCCAACAGAAAATACAGCCCTTGTTCGCCGCTCCACTAGAGCTCATCAACCCCTGTCCTTTTTAAAGGACTAT
CATTGCCATTTGGTTACTACAACAACTCCAAAGTCTACCACTTATGTGCATCCTACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAATTTATTCATTCATATTTGGAAAATCTAAGACGACATGATTATTTGCCTTCCACAGTTGCAGACCATGAAAATTCGAAAGTTCCTAAGATCGAACAGGAATATAT
GGCCTCCCCTATTAACAATAATGTCAATAACTCACCTTCCATTATTGCTAGCCCTACTAGCTCAGTTATTACACAAGCTCTAGAACAATATAATCATTCTCCAGTAAATG
ATATTATTGTTGAGACAATTACTGCTTTAGAAGCTTTGCCAACAGAAAATACAGCCCTTGTTCGCCGCTCCACTAGAGCTCATCAACCCCTGTCCTTTTTAAAGGACTAT
CATTGCCATTTGGTTACTACAACAACTCCAAAGTCTACCACTTATGTGCATCCTACTTGA
Protein sequenceShow/hide protein sequence
MQFIHSYLENLRRHDYLPSTVADHENSKVPKIEQEYMASPINNNVNNSPSIIASPTSSVITQALEQYNHSPVNDIIVETITALEALPTENTALVRRSTRAHQPLSFLKDY
HCHLVTTTTPKSTTYVHPT