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Sed0008710 (gene) of Chayote v1 genome

Gene IDSed0008710
OrganismSechium edule (Chayote v1)
Descriptionprotein RADIALIS-like 3
Genome locationLG01:19738115..19739640
RNA-Seq ExpressionSed0008710
SyntenySed0008710
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147867.1 protein RADIALIS-like 3 [Cucumis sativus]2.4e-4086.17Show/hide
Query:  MGSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGPAARGFCFLDEDQRMRSLRLH
        MGSGSNWTAKQNK FENALA+YDKDTPERW NLARAVGGKTAE+VKRHYERLV+DVNKIETGQVPFPNY +S PAARGF FLD++QRMRSL+L+
Subjt:  MGSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGPAARGFCFLDEDQRMRSLRLH

XP_008465612.1 PREDICTED: protein RADIALIS-like 3 [Cucumis melo]8.3e-4190.8Show/hide
Query:  MGSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGPAARGFCFLDEDQR
        MGSGSNWTAKQNK FENALA+YDKDTPERWHNLARAVGGKTAE+VKRHYERLV+DVNKIETGQVPFPNY +SGPAARGFCFLD++QR
Subjt:  MGSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGPAARGFCFLDEDQR

XP_022138113.1 protein RADIALIS-like 3 [Momordica charantia]3.7e-4172.5Show/hide
Query:  MAANSGIKKKK-----KNQVLIEIIRMGSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGP
        M AN   +++K     K    IE      GSNWTAKQNK FENALAVYDKDTP+RWHNLARAVGGKTAE+VKRHYERLVDDVNKIETGQVPFPNY KS  
Subjt:  MAANSGIKKKK-----KNQVLIEIIRMGSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGP

Query:  AARGFCFLDEDQRMRSLRLH
          RGFCF+DE++RMRSLRLH
Subjt:  AARGFCFLDEDQRMRSLRLH

XP_022941099.1 protein RADIALIS-like 3 [Cucurbita moschata]2.5e-3780.85Show/hide
Query:  MGSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGPAARGFCFLDEDQRMRSLRLH
        M SGS WTAKQNK FENALA+YD+DTPERW+NLARAVGGKTAE+VKRHYE LV+DVNKIE+GQVPFP YTKS PA  GF F+DE+QRMRSL+LH
Subjt:  MGSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGPAARGFCFLDEDQRMRSLRLH

XP_038905673.1 protein RADIALIS-like 3 [Benincasa hispida]8.0e-4489.36Show/hide
Query:  MGSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGPAARGFCFLDEDQRMRSLRLH
        MGSGS+WTAKQNK FENALA+YDKDTPERWHNLARAVGGKTAE+VKRHYERLV+DVNKIETGQVPFPNY +SGPA RGFCF+DE+QRMRSLRLH
Subjt:  MGSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGPAARGFCFLDEDQRMRSLRLH

TrEMBL top hitse value%identityAlignment
A0A0A0LGK8 SANT domain-containing protein1.2e-4086.17Show/hide
Query:  MGSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGPAARGFCFLDEDQRMRSLRLH
        MGSGSNWTAKQNK FENALA+YDKDTPERW NLARAVGGKTAE+VKRHYERLV+DVNKIETGQVPFPNY +S PAARGF FLD++QRMRSL+L+
Subjt:  MGSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGPAARGFCFLDEDQRMRSLRLH

A0A1S3CPA0 protein RADIALIS-like 34.0e-4190.8Show/hide
Query:  MGSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGPAARGFCFLDEDQR
        MGSGSNWTAKQNK FENALA+YDKDTPERWHNLARAVGGKTAE+VKRHYERLV+DVNKIETGQVPFPNY +SGPAARGFCFLD++QR
Subjt:  MGSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGPAARGFCFLDEDQR

A0A5D3D7Z0 Protein RADIALIS-like 34.0e-4190.8Show/hide
Query:  MGSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGPAARGFCFLDEDQR
        MGSGSNWTAKQNK FENALA+YDKDTPERWHNLARAVGGKTAE+VKRHYERLV+DVNKIETGQVPFPNY +SGPAARGFCFLD++QR
Subjt:  MGSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGPAARGFCFLDEDQR

A0A6J1CC55 protein RADIALIS-like 31.8e-4172.5Show/hide
Query:  MAANSGIKKKK-----KNQVLIEIIRMGSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGP
        M AN   +++K     K    IE      GSNWTAKQNK FENALAVYDKDTP+RWHNLARAVGGKTAE+VKRHYERLVDDVNKIETGQVPFPNY KS  
Subjt:  MAANSGIKKKK-----KNQVLIEIIRMGSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGP

Query:  AARGFCFLDEDQRMRSLRLH
          RGFCF+DE++RMRSLRLH
Subjt:  AARGFCFLDEDQRMRSLRLH

A0A6J1FM85 protein RADIALIS-like 31.2e-3780.85Show/hide
Query:  MGSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGPAARGFCFLDEDQRMRSLRLH
        M SGS WTAKQNK FENALA+YD+DTPERW+NLARAVGGKTAE+VKRHYE LV+DVNKIE+GQVPFP YTKS PA  GF F+DE+QRMRSL+LH
Subjt:  MGSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGPAARGFCFLDEDQRMRSLRLH

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.4e-2762.64Show/hide
Query:  SGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGPAARGFCFLDEDQRMRSLRL
        S  +WTAKQNKAFE ALA YD+DTP RW N+A+ VGGKT E+VKRHYE LV D+N IE G VPFPNY  SG    G     E++RMR++RL
Subjt:  SGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGPAARGFCFLDEDQRMRSLRL

Q1A173 Protein RADIALIS-like 62.8e-2357.3Show/hide
Query:  SNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGPAARGFCFLDEDQRMRSLRL
        S WT  QNK FE ALAVYDKDTP+RWHN+A+AVGGKT E+VKRHY+ LV+D+  IETG+VP PNY      +R     D  ++M++L++
Subjt:  SNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGPAARGFCFLDEDQRMRSLRL

Q58FS3 Transcription factor RADIALIS1.5e-2456.52Show/hide
Query:  GSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGPAARGFCFLDEDQRMRSLRL
        GSG  W+AK+NKAFE ALAVYDKDTP+RW N+ARAV G+T E+VK+HYE LV+D+  IE+G+VPFPNY  +G   +      +++R R+L++
Subjt:  GSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGPAARGFCFLDEDQRMRSLRL

Q6NNN0 Protein RADIALIS-like 39.5e-2464.38Show/hide
Query:  MGSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSG
        M S ++WT K+NK FE ALA YD+DTP+RWHN+ARAVGGK+AE+V+RHYE L+ DVN IE+G+ P PNY  +G
Subjt:  MGSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSG

Q9SIJ5 Protein RADIALIS-like 21.2e-2664.52Show/hide
Query:  GSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNY-TKSGPAARGFCFLDEDQRMRSLRL
        GSGS WT KQNKAFE ALAVYD+DTP+RWHN+ARAVGGKT E+ KR Y+ LV D+  IE G VPFP+Y T +G + RG    DE++RMRS++L
Subjt:  GSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNY-TKSGPAARGFCFLDEDQRMRSLRL

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.1e-2253.19Show/hide
Query:  MGSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGPAARGFCFLDEDQR-MRSLRL
        M S S+WT+KQNK FE ALAVYDKDTP+RW N+A+AVG K+AE+VKRHY+ LV+D+  IE   VP P Y      ++     D D R M+++R+
Subjt:  MGSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGPAARGFCFLDEDQR-MRSLRL

AT1G75250.1 RAD-like 61.3e-2372.31Show/hide
Query:  SNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNY
        S WT  QNK FE ALAVYDKDTP+RWHN+A+AVGGKT E+VKRHY+ LV+D+  IETG+VP PNY
Subjt:  SNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNY

AT1G75250.2 RAD-like 62.0e-2457.3Show/hide
Query:  SNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGPAARGFCFLDEDQRMRSLRL
        S WT  QNK FE ALAVYDKDTP+RWHN+A+AVGGKT E+VKRHY+ LV+D+  IETG+VP PNY      +R     D  ++M++L++
Subjt:  SNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGPAARGFCFLDEDQRMRSLRL

AT2G21650.1 Homeodomain-like superfamily protein8.5e-2864.52Show/hide
Query:  GSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNY-TKSGPAARGFCFLDEDQRMRSLRL
        GSGS WT KQNKAFE ALAVYD+DTP+RWHN+ARAVGGKT E+ KR Y+ LV D+  IE G VPFP+Y T +G + RG    DE++RMRS++L
Subjt:  GSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNY-TKSGPAARGFCFLDEDQRMRSLRL

AT4G39250.1 RAD-like 11.0e-2862.64Show/hide
Query:  SGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGPAARGFCFLDEDQRMRSLRL
        S  +WTAKQNKAFE ALA YD+DTP RW N+A+ VGGKT E+VKRHYE LV D+N IE G VPFPNY  SG    G     E++RMR++RL
Subjt:  SGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGPAARGFCFLDEDQRMRSLRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCCAATTCTGGCATTAAAAAGAAAAAGAAAAACCAGGTACTGATTGAAATAATTAGAATGGGCTCTGGGTCCAACTGGACGGCGAAGCAGAACAAGGCGTTCGA
AAATGCGTTGGCGGTTTACGACAAGGACACGCCGGAGCGGTGGCACAACCTCGCCAGAGCCGTCGGCGGCAAGACGGCGGAGGATGTCAAACGCCACTACGAAAGGCTCG
TGGATGACGTCAACAAGATCGAAACCGGTCAAGTTCCTTTCCCCAATTACACAAAATCCGGACCCGCCGCCAGGGGATTTTGCTTTCTTGATGAAGACCAACGGATGAGG
AGTCTACGGTTGCACTGA
mRNA sequenceShow/hide mRNA sequence
AAAACGTCGAAGCCACTTGCCCCAAATTCCCTCTGTGTTTCGCTTTCGCAGGTATTTAAGCACCAGAAATGGCAGCCAATTCTGGCATTAAAAAGAAAAAGAAAAACCAG
GTACTGATTGAAATAATTAGAATGGGCTCTGGGTCCAACTGGACGGCGAAGCAGAACAAGGCGTTCGAAAATGCGTTGGCGGTTTACGACAAGGACACGCCGGAGCGGTG
GCACAACCTCGCCAGAGCCGTCGGCGGCAAGACGGCGGAGGATGTCAAACGCCACTACGAAAGGCTCGTGGATGACGTCAACAAGATCGAAACCGGTCAAGTTCCTTTCC
CCAATTACACAAAATCCGGACCCGCCGCCAGGGGATTTTGCTTTCTTGATGAAGACCAACGGATGAGGAGTCTACGGTTGCACTGAAGTGTGGATGTACGGTAGACGAGA
TTTCTAAATCTCCATTAACGTTTTCAACTAAAACTTGCAATGTTCAACCACCAAATTTCAATGAAATATGAAGCCCAAATGTAGCTAGTTTTCTTCAGCCATCTTTATTG
TAATTTCCTAGTTCTTTATCTTCTATGAGCTCTTGTGTCATATTGTTTGGTATTGAATAAAAAGAATATGTGGAATGAGG
Protein sequenceShow/hide protein sequence
MAANSGIKKKKKNQVLIEIIRMGSGSNWTAKQNKAFENALAVYDKDTPERWHNLARAVGGKTAEDVKRHYERLVDDVNKIETGQVPFPNYTKSGPAARGFCFLDEDQRMR
SLRLH