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Sed0008714 (gene) of Chayote v1 genome

Gene IDSed0008714
OrganismSechium edule (Chayote v1)
DescriptionVoltage-dependent T-type calcium channel subunit alpha-1I (Ca(V)3.3) like
Genome locationLG05:39716530..39717144
RNA-Seq ExpressionSed0008714
SyntenySed0008714
Gene Ontology termsGO:0045490 - pectin catabolic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0030599 - pectinesterase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647058.1 hypothetical protein Csa_023003, partial [Cucumis sativus]5.3e-2183.33Show/hide
Query:  MEAETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDAEPADPRERSKRRLRALHGPISPGRDA
        MEAETA+ AILGRLGRHCYAVLCLGVLLLTVAVVHYVGD EP DPRER+KRRLR LHG    G DA
Subjt:  MEAETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDAEPADPRERSKRRLRALHGPISPGRDA

KAG6570773.1 Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. sororia]9.7e-2386.76Show/hide
Query:  MEAETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDAEPADPRERSKRRLRALHGPISPGRDAPP
        ME ETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGD EP DPRERSKRRLR LHG    GRD PP
Subjt:  MEAETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDAEPADPRERSKRRLRALHGPISPGRDAPP

KAG7010620.1 Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-2585.33Show/hide
Query:  MEAETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDAEPADPRERSKRRLRALHGPISPGRDAPPVFNRAGS
        ME ETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGD EP DPRERSKRRLR LHG    GRD PPVFNR  S
Subjt:  MEAETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDAEPADPRERSKRRLRALHGPISPGRDAPPVFNRAGS

ONI00617.1 hypothetical protein PRUPE_6G098100 [Prunus persica]1.5e-1061.4Show/hide
Query:  ILGRLGRHCYAVLCLGVLLLTVAVVHYVGDAEPADPRERSKRRLRALHGPISPGRDA
        +LG+LGR CYAVLCLGV++L V +V+YVG  E  DP ER++RRLRA+HGP S  R +
Subjt:  ILGRLGRHCYAVLCLGVLLLTVAVVHYVGDAEPADPRERSKRRLRALHGPISPGRDA

XP_023512260.1 syntaxin-71-like [Cucurbita pepo subsp. pepo]1.6e-2585.33Show/hide
Query:  MEAETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDAEPADPRERSKRRLRALHGPISPGRDAPPVFNRAGS
        ME ETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGD EP DPRERSKRRLR LHG    GRD PPVFNR  S
Subjt:  MEAETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDAEPADPRERSKRRLRALHGPISPGRDAPPVFNRAGS

TrEMBL top hitse value%identityAlignment
A0A0A0KC65 Uncharacterized protein2.6e-2183.33Show/hide
Query:  MEAETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDAEPADPRERSKRRLRALHGPISPGRDA
        MEAETA+ AILGRLGRHCYAVLCLGVLLLTVAVVHYVGD EP DPRER+KRRLR LHG    G DA
Subjt:  MEAETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDAEPADPRERSKRRLRALHGPISPGRDA

A0A251NMS2 Uncharacterized protein7.0e-1161.4Show/hide
Query:  ILGRLGRHCYAVLCLGVLLLTVAVVHYVGDAEPADPRERSKRRLRALHGPISPGRDA
        +LG+LGR CYAVLCLGV++L V +V+YVG  E  DP ER++RRLRA+HGP S  R +
Subjt:  ILGRLGRHCYAVLCLGVLLLTVAVVHYVGDAEPADPRERSKRRLRALHGPISPGRDA

A0A660KR43 MLO-like protein1.6e-1046.74Show/hide
Query:  SLLSIFADFDLFIKSQPERITQFLHMEAETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDAEPADPRERSKRRLRALH-GPISPGRDA
        S+ +I+++F      + ER       E E + G +LG+LGR CYAVLCLGVLL++V + H V  AEP DPRER+ RRLR L  GP  P + +
Subjt:  SLLSIFADFDLFIKSQPERITQFLHMEAETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDAEPADPRERSKRRLRALH-GPISPGRDA

A0A6J0ZWG2 Pectinesterase1.6e-1057.14Show/hide
Query:  MEAETAVGAILGRLGRHCYAVLCLGVLLLTVAVVH--YVGDAEPADPRERSKRRLRALHGPIS
        ME E  V  +LG LGRHCYAVLC+ V+L++V + H  Y  +  P D RER+KRRLR+LHGP S
Subjt:  MEAETAVGAILGRLGRHCYAVLCLGVLLLTVAVVH--YVGDAEPADPRERSKRRLRALHGPIS

A0A7N2KN99 Uncharacterized protein1.9e-1171.15Show/hide
Query:  VGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDAEPADPRERSKRRLRALHG
        V  +LG+L RHCYAVLCLGVLLL+V + HYV  AEP+DPRER+ RRLRA HG
Subjt:  VGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDAEPADPRERSKRRLRALHG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGGCCTCTTCAAAACTCGAGGGGAAAGTCACAGTTAGTAGGGACCCACCCACGAAATAAAACCCCCATCACACACAGAAATCAAAAACAAATCTCCCCAAATCT
TCATCGATATCCAATTCAATCATTACTCTCTATTTTCGCCGATTTTGATCTCTTTATAAAGTCACAGCCGGAGCGAATCACCCAATTTCTTCACATGGAGGCGGAGACGG
CGGTGGGGGCGATTCTGGGGAGGCTGGGCCGCCATTGCTACGCGGTCTTGTGTTTGGGAGTGCTGCTTTTGACGGTCGCCGTCGTTCACTACGTCGGCGACGCCGAGCCG
GCCGATCCCCGCGAGCGCTCCAAGCGCCGCCTTCGGGCCTTGCACGGTCCGATCAGCCCCGGCCGTGACGCGCCTCCGGTTTTCAATCGCGCTGGTTCGTTCTGA
mRNA sequenceShow/hide mRNA sequence
CTTTATTTATAAAATAAAAAAAGGTATGGATGGGCCTCTTCAAAACTCGAGGGGAAAGTCACAGTTAGTAGGGACCCACCCACGAAATAAAACCCCCATCACACACAGAA
ATCAAAAACAAATCTCCCCAAATCTTCATCGATATCCAATTCAATCATTACTCTCTATTTTCGCCGATTTTGATCTCTTTATAAAGTCACAGCCGGAGCGAATCACCCAA
TTTCTTCACATGGAGGCGGAGACGGCGGTGGGGGCGATTCTGGGGAGGCTGGGCCGCCATTGCTACGCGGTCTTGTGTTTGGGAGTGCTGCTTTTGACGGTCGCCGTCGT
TCACTACGTCGGCGACGCCGAGCCGGCCGATCCCCGCGAGCGCTCCAAGCGCCGCCTTCGGGCCTTGCACGGTCCGATCAGCCCCGGCCGTGACGCGCCTCCGGTTTTCA
ATCGCGCTGGTTCGTTCTGAATCGGACGGCTGGATCTCATCTGATGCAATCGTTTTTTTTTTCTTTTTTAATTTCCTGTTGGTTTTGTAGATAGGCGAATAAATGTCTAC
CCCGATCCTTGTATTCTGTCGCAAGATGTAAATTATTGCTTCTTTTTCTGTATTTTGTTTGTGGG
Protein sequenceShow/hide protein sequence
MDGPLQNSRGKSQLVGTHPRNKTPITHRNQKQISPNLHRYPIQSLLSIFADFDLFIKSQPERITQFLHMEAETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDAEP
ADPRERSKRRLRALHGPISPGRDAPPVFNRAGSF