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Sed0008779 (gene) of Chayote v1 genome

Gene IDSed0008779
OrganismSechium edule (Chayote v1)
DescriptionVacuolar protein sorting-associated protein 55-like
Genome locationLG03:25449049..25466833
RNA-Seq ExpressionSed0008779
SyntenySed0008779
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR007262 - Vps55/LEPROT


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR43383.1 hypothetical protein CICLE_v10012797mg [Citrus clementina]2.9e-5871.68Show/hide
Query:  FKICYTNYILINIDFIRSNRAFVVAIGGENH----RTSLLQELLACYNDDDIGRLAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGG
        F+  Y N  L+N     S  +F   I   ++    +   + EL A  N DD  RLAGLAFMFSSSILLQILACA+Y+NWWP+LSALMYVLVPMPCLFFGG
Subjt:  FKICYTNYILINIDFIRSNRAFVVAIGGENH----RTSLLQELLACYNDDDIGRLAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGG

Query:  GSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
        GSTQFL SR+GGGWI AAKFLTGAS VGSLAIPIILRHAHMIETGAMFIEF SFFIFVCTV+CFHR SLEDDW
Subjt:  GSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIEFVSFFIFVCTVLCFHRVSLEDDW

KAG6595172.1 Vacuolar protein sorting-associated protein 55-like protein, partial [Cucurbita argyrosperma subsp. sororia]1.1e-5796.64Show/hide
Query:  LAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIEFVSF
        LAGLAFMFSSSILLQILACALY+NWWPLLSALMYVLVPMPCLFFGGGSTQFL SR+GGGWIGAAKFLTGASTVGSLAIPIILRHAHMI+TGAMFIEFVSF
Subjt:  LAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIEFVSF

Query:  FIFVCTVLCFHRVSLEDDW
        FIFVCTVLCFHRVSLEDDW
Subjt:  FIFVCTVLCFHRVSLEDDW

XP_008462591.2 PREDICTED: vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucumis melo]2.9e-5897.48Show/hide
Query:  LAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIEFVSF
        LAGLAFMFSSSILLQILACALY+NWWPLLSALMYVLVPMPCLFFGGGSTQFLISR+GGGWIGAAKFLTGASTVGSLAIPIILRHAHMI+TGAMFIEFVSF
Subjt:  LAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIEFVSF

Query:  FIFVCTVLCFHRVSLEDDW
        FIFVCTVLCFHRVSLEDDW
Subjt:  FIFVCTVLCFHRVSLEDDW

XP_022963366.1 vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucurbita moschata]1.1e-5796.64Show/hide
Query:  LAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIEFVSF
        LAGLAFMFSSSILLQILACALY+NWWPLLSALMYVLVPMPCLFFGGGSTQFL SR+GGGWIGAAKFLTGASTVGSLAIPIILRHAHMI+TGAMFIEFVSF
Subjt:  LAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIEFVSF

Query:  FIFVCTVLCFHRVSLEDDW
        FIFVCTVLCFHRVSLEDDW
Subjt:  FIFVCTVLCFHRVSLEDDW

XP_023518928.1 vacuolar protein sorting-associated protein 55 homolog isoform X1 [Cucurbita pepo subsp. pepo]1.1e-5796.64Show/hide
Query:  LAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIEFVSF
        LAGLAFMFSSSILLQILACALY+NWWPLLSALMYVLVPMPCLFFGGGSTQFL SR+GGGWIGAAKFLTGASTVGSLAIPIILRHAHMI+TGAMFIEFVSF
Subjt:  LAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIEFVSF

Query:  FIFVCTVLCFHRVSLEDDW
        FIFVCTVLCFHRVSLEDDW
Subjt:  FIFVCTVLCFHRVSLEDDW

TrEMBL top hitse value%identityAlignment
A0A0A0KHI6 Uncharacterized protein1.4e-5897.48Show/hide
Query:  LAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIEFVSF
        LAGLAFMFSSSILLQILACALY+NWWPLLSALMYVLVPMPCLFFGGGSTQFLISR+GGGWIGAAKFLTGASTVGSLAIPIILRHAHMI+TGAMFIEFVSF
Subjt:  LAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIEFVSF

Query:  FIFVCTVLCFHRVSLEDDW
        FIFVCTVLCFHRVSLEDDW
Subjt:  FIFVCTVLCFHRVSLEDDW

A0A1S3CIW0 vacuolar protein sorting-associated protein 55 homolog isoform X11.4e-5897.48Show/hide
Query:  LAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIEFVSF
        LAGLAFMFSSSILLQILACALY+NWWPLLSALMYVLVPMPCLFFGGGSTQFLISR+GGGWIGAAKFLTGASTVGSLAIPIILRHAHMI+TGAMFIEFVSF
Subjt:  LAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIEFVSF

Query:  FIFVCTVLCFHRVSLEDDW
        FIFVCTVLCFHRVSLEDDW
Subjt:  FIFVCTVLCFHRVSLEDDW

A0A6J1HFY6 vacuolar protein sorting-associated protein 55 homolog isoform X15.4e-5896.64Show/hide
Query:  LAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIEFVSF
        LAGLAFMFSSSILLQILACALY+NWWPLLSALMYVLVPMPCLFFGGGSTQFL SR+GGGWIGAAKFLTGASTVGSLAIPIILRHAHMI+TGAMFIEFVSF
Subjt:  LAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIEFVSF

Query:  FIFVCTVLCFHRVSLEDDW
        FIFVCTVLCFHRVSLEDDW
Subjt:  FIFVCTVLCFHRVSLEDDW

A0A6J1ICF8 vacuolar protein sorting-associated protein 55 homolog isoform X15.4e-5896.64Show/hide
Query:  LAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIEFVSF
        LAGLAFMFSSSILLQILACALY+NWWPLLSALMYVLVPMPCLFFGGGSTQFL SR+GGGWIGAAKFLTGASTVGSLAIPIILRHAHMI+TGAMFIEFVSF
Subjt:  LAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIEFVSF

Query:  FIFVCTVLCFHRVSLEDDW
        FIFVCTVLCFHRVSLEDDW
Subjt:  FIFVCTVLCFHRVSLEDDW

V4S7C1 Uncharacterized protein1.4e-5871.68Show/hide
Query:  FKICYTNYILINIDFIRSNRAFVVAIGGENH----RTSLLQELLACYNDDDIGRLAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGG
        F+  Y N  L+N     S  +F   I   ++    +   + EL A  N DD  RLAGLAFMFSSSILLQILACA+Y+NWWP+LSALMYVLVPMPCLFFGG
Subjt:  FKICYTNYILINIDFIRSNRAFVVAIGGENH----RTSLLQELLACYNDDDIGRLAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGG

Query:  GSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIEFVSFFIFVCTVLCFHRVSLEDDW
        GSTQFL SR+GGGWI AAKFLTGAS VGSLAIPIILRHAHMIETGAMFIEF SFFIFVCTV+CFHR SLEDDW
Subjt:  GSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIEFVSFFIFVCTVLCFHRVSLEDDW

SwissProt top hitse value%identityAlignment
P47111 Vacuolar protein sorting-associated protein 551.9e-0426.32Show/hide
Query:  RLAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGS---TQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIE
        ++  L+   +   LL IL+CAL+ N++PL   L+++L P+P   F  G+   T   +S         A FLTG      +A+P++  H  +I   +  + 
Subjt:  RLAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGS---TQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIE

Query:  FVSFFIFVCTVLCF
         +   I   +++ F
Subjt:  FVSFFIFVCTVLCF

Q9AST6 Vacuolar protein sorting-associated protein 55 homolog2.5e-2854.46Show/hide
Query:  DIGRLAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIE
        D+G++A LA + S+ I+LQILACAL++NWWP+LS +MYVL+PMP LFFGG  +  L +     WI AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++
Subjt:  DIGRLAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIE

Query:  FVSFFIFVCTVL
          S+ +F+  +L
Subjt:  FVSFFIFVCTVL

Q9UUH1 Vacuolar protein sorting-associated protein 553.5e-0626.02Show/hide
Query:  DIGRLAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQF-LISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFI
        D+ ++ GL+ + +   +L IL+CAL+ NW+PLL  + ++L P+P L     ST    +  E    +   +F  GA+     A+PI+  +  +I T A  +
Subjt:  DIGRLAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQF-LISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFI

Query:  EFVSFFIFVCTVLCFHRVSLEDD
          V   I    +  + +  ++ +
Subjt:  EFVSFFIFVCTVLCFHRVSLEDD

Arabidopsis top hitse value%identityAlignment
AT1G32410.1 Vacuolar protein sorting 55 (VPS55) family protein1.8e-2954.46Show/hide
Query:  DIGRLAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIE
        D+G++A LA + S+ I+LQILACAL++NWWP+LS +MYVL+PMP LFFGG  +  L +     WI AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++
Subjt:  DIGRLAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIE

Query:  FVSFFIFVCTVL
          S+ +F+  +L
Subjt:  FVSFFIFVCTVL

AT1G32410.2 Vacuolar protein sorting 55 (VPS55) family protein1.8e-2954.46Show/hide
Query:  DIGRLAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIE
        D+G++A LA + S+ I+LQILACAL++NWWP+LS +MYVL+PMP LFFGG  +  L +     WI AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++
Subjt:  DIGRLAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIE

Query:  FVSFFIFVCTVL
          S+ +F+  +L
Subjt:  FVSFFIFVCTVL

AT1G32410.3 Vacuolar protein sorting 55 (VPS55) family protein1.8e-2954.46Show/hide
Query:  DIGRLAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIE
        D+G++A LA + S+ I+LQILACAL++NWWP+LS +MYVL+PMP LFFGG  +  L +     WI AAKFLTGAS VGS+AIP IL+HA +I  GA+ ++
Subjt:  DIGRLAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIE

Query:  FVSFFIFVCTVL
          S+ +F+  +L
Subjt:  FVSFFIFVCTVL

AT3G11530.1 Vacuolar protein sorting 55 (VPS55) family protein2.7e-5487.61Show/hide
Query:  MFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIEFVSFFIFVCT
        MFSSSILLQILACA+Y NWWP+LSALMYV+VPMPC+FFGGGSTQFLISR+GGGWI AAKFLTGASTVGSLAIPIILRHA MIETGAM IEF SFFIF+CT
Subjt:  MFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIEFVSFFIFVCT

Query:  VLCFHRVSLEDDW
        V+CFHR SL+DDW
Subjt:  VLCFHRVSLEDDW

AT3G11530.2 Vacuolar protein sorting 55 (VPS55) family protein2.7e-5487.61Show/hide
Query:  MFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIEFVSFFIFVCT
        MFSSSILLQILACA+Y NWWP+LSALMYV+VPMPC+FFGGGSTQFLISR+GGGWI AAKFLTGASTVGSLAIPIILRHA MIETGAM IEF SFFIF+CT
Subjt:  MFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQFLISREGGGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIEFVSFFIFVCT

Query:  VLCFHRVSLEDDW
        V+CFHR SL+DDW
Subjt:  VLCFHRVSLEDDW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATACATTTAAAATTTGTTATACAAATTATATATTAATAAACATTGACTTTATTAGATCAAATCGTGCCTTCGTCGTCGCGATTGGGGGCGAAAATCATCGCACCTC
ACTGTTGCAGGAACTTCTAGCTTGCTATAATGACGATGACATTGGAAGGTTAGCTGGGCTTGCATTTATGTTTTCATCTAGCATACTGCTACAGATCTTGGCTTGTGCAC
TATACAGCAATTGGTGGCCTTTGTTATCAGCTTTGATGTATGTGCTTGTTCCAATGCCTTGTTTATTTTTTGGAGGTGGATCCACGCAGTTTTTGATTAGCCGAGAAGGC
GGAGGGTGGATAGGTGCTGCTAAGTTCTTGACGGGAGCATCAACTGTGGGGAGTTTGGCAATTCCGATTATCCTCAGGCATGCTCATATGATCGAAACAGGAGCCATGTT
CATAGAATTCGTTTCCTTCTTCATTTTTGTTTGCACTGTGTTGTGTTTCCACCGTGTTAGCCTCGAAGATGATTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCATACATTTAAAATTTGTTATACAAATTATATATTAATAAACATTGACTTTATTAGATCAAATCGTGCCTTCGTCGTCGCGATTGGGGGCGAAAATCATCGCACCTC
ACTGTTGCAGGAACTTCTAGCTTGCTATAATGACGATGACATTGGAAGGTTAGCTGGGCTTGCATTTATGTTTTCATCTAGCATACTGCTACAGATCTTGGCTTGTGCAC
TATACAGCAATTGGTGGCCTTTGTTATCAGCTTTGATGTATGTGCTTGTTCCAATGCCTTGTTTATTTTTTGGAGGTGGATCCACGCAGTTTTTGATTAGCCGAGAAGGC
GGAGGGTGGATAGGTGCTGCTAAGTTCTTGACGGGAGCATCAACTGTGGGGAGTTTGGCAATTCCGATTATCCTCAGGCATGCTCATATGATCGAAACAGGAGCCATGTT
CATAGAATTCGTTTCCTTCTTCATTTTTGTTTGCACTGTGTTGTGTTTCCACCGTGTTAGCCTCGAAGATGATTGGTGA
Protein sequenceShow/hide protein sequence
MHTFKICYTNYILINIDFIRSNRAFVVAIGGENHRTSLLQELLACYNDDDIGRLAGLAFMFSSSILLQILACALYSNWWPLLSALMYVLVPMPCLFFGGGSTQFLISREG
GGWIGAAKFLTGASTVGSLAIPIILRHAHMIETGAMFIEFVSFFIFVCTVLCFHRVSLEDDW