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Sed0008787 (gene) of Chayote v1 genome

Gene IDSed0008787
OrganismSechium edule (Chayote v1)
DescriptionChlorophyll a/b-binding family protein
Genome locationLG05:34067560..34068835
RNA-Seq ExpressionSed0008787
SyntenySed0008787
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048752.1 hypothetical protein E6C27_scaffold43G00600 [Cucumis melo var. makuwa]2.7e-3470.08Show/hide
Query:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDAPIIHLEPD--SPSTSKYLDSNSLSLGLNLQ-SAGMQV--DTHEAGLIPADT
        MGRH SEPTMVGTSIALLQERFRQLQK+KQ+RE+KELLNLL +SNRVDA I+HLEP+     T + LDSNSLSLGLNL+ + G QV  D HEA  +P+DT
Subjt:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDAPIIHLEPD--SPSTSKYLDSNSLSLGLNLQ-SAGMQV--DTHEAGLIPADT

Query:  KFWPGKSVMASALRSFDSPDVDTTLHL
        KF P  S M S LRSFD+ +VDTTLHL
Subjt:  KFWPGKSVMASALRSFDSPDVDTTLHL

KAE8646145.1 hypothetical protein Csa_016195, partial [Cucumis sativus]8.2e-3174.77Show/hide
Query:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDAPIIHLEPDSPSTSKYLDSNSLSLGLNLQ-SAGMQV--DTHEAGLIPADTKF
        MGRH+SEPTMVGTSIALLQERFRQLQK+KQRRE+KELLNLL +SNRVDA I+HLEP+  STS+ LDSNSLSLGLNL+ +AG QV  D HEA  +P DTKF
Subjt:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDAPIIHLEPDSPSTSKYLDSNSLSLGLNLQ-SAGMQV--DTHEAGLIPADTKF

Query:  WPGKSVM
          G S M
Subjt:  WPGKSVM

KAG6572236.1 hypothetical protein SDJN03_28964, partial [Cucurbita argyrosperma subsp. sororia]5.2e-2560.32Show/hide
Query:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDAPIIHLEPDSPSTSKYLDSNSLSLGLNLQSAGMQVDTHEAGLIPADTKFWPG
        M RHSSEP +VGTSIALLQERFRQLQK+K RREKKE++ LLSDSN            S STS+ L  NSLSLGLNL +AG QVD+HE  L+P DTK  P 
Subjt:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDAPIIHLEPDSPSTSKYLDSNSLSLGLNLQSAGMQVDTHEAGLIPADTKFWPG

Query:  KSVMASALRSFDSP----DVDTTLHL
                RS+D+P    DVDTTLHL
Subjt:  KSVMASALRSFDSP----DVDTTLHL

KAG6589104.1 hypothetical protein SDJN03_17669, partial [Cucurbita argyrosperma subsp. sororia]3.3e-2475.28Show/hide
Query:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVD-APIIHLEPDSPSTSKYLDSNSLSLGLNLQSAGMQVDTHEA
        MGRHSSE TM+GTSIALLQERFRQLQKDKQRREKKELL+LLSDSNRV+ + I+HLE +  S S+ L+ +SLSLGLN  SAG QVD HEA
Subjt:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVD-APIIHLEPDSPSTSKYLDSNSLSLGLNLQSAGMQVDTHEA

XP_023916992.1 uncharacterized protein LOC112028527 [Quercus suber]5.0e-2048.85Show/hide
Query:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDAPIIHLEPD---------SPSTSKYLDSNSLSLGLNLQSAGMQVDTHEAGLI
        MGR S++PTMV +SIALLQERFRQL+K K+RRE+KELLNL +++ R+  P  H EP          +P+ S + DS SL L L  + A +Q     A   
Subjt:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDAPIIHLEPD---------SPSTSKYLDSNSLSLGLNLQSAGMQVDTHEAGLI

Query:  PADTKFWPGKSVMASALRSFDSPDVDTTLHL
        P  T  WP  + MAS  RSF++ DVDT+LHL
Subjt:  PADTKFWPGKSVMASALRSFDSPDVDTTLHL

TrEMBL top hitse value%identityAlignment
A0A0A0K617 Uncharacterized protein1.0e-3975.2Show/hide
Query:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDAPIIHLEPDSPSTSKYLDSNSLSLGLNLQ-SAGMQV--DTHEAGLIPADTKF
        MGRH+SEPTMVGTSIALLQERFRQLQK+KQRRE+KELLNLL +SNRVDA I+HLEP+  STS+ LDSNSLSLGLNL+ +AG QV  D HEA  +P DTKF
Subjt:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDAPIIHLEPDSPSTSKYLDSNSLSLGLNLQ-SAGMQV--DTHEAGLIPADTKF

Query:  WPGKSVMASALRSFDSPDVDTTLHL
          G S M S  RSFDSP+VDTTLHL
Subjt:  WPGKSVMASALRSFDSPDVDTTLHL

A0A2N9FNY6 Uncharacterized protein1.0e-1847.33Show/hide
Query:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDAPIIHLEPD---------SPSTSKYLDSNSLSLGLNLQSAGMQVDTHEAGLI
        MGR S++PTMV +SIALLQERFRQL+K K+RRE+KELL L +++ R+  P  H EP          +P  S   DS SL L L  + A  Q     A  +
Subjt:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDAPIIHLEPD---------SPSTSKYLDSNSLSLGLNLQSAGMQVDTHEAGLI

Query:  PADTKFWPGKSVMASALRSFDSPDVDTTLHL
        P     WP  + MAS  RSF++ DVDT+LHL
Subjt:  PADTKFWPGKSVMASALRSFDSPDVDTTLHL

A0A2P5ESL9 Uncharacterized protein2.5e-1748.48Show/hide
Query:  MGRHSSE-PTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDAPIIHLEPDS---------PSTSKYLDSNSLSLGLNLQSAGMQVDTHEAGL
        MGR S +  T V +SIALLQERFRQLQK K+RRE+KEL+ +LS+S R+ +P  H +P +         P      D  SLSLGL+LQS   Q D +    
Subjt:  MGRHSSE-PTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDAPIIHLEPDS---------PSTSKYLDSNSLSLGLNLQSAGMQVDTHEAGL

Query:  IPADTKFWPGKSVMASALRSFDSPDVDTTLHL
         P  T  WP  S  AS+ +SFDS D+DT+LHL
Subjt:  IPADTKFWPGKSVMASALRSFDSPDVDTTLHL

A0A5D3E685 Uncharacterized protein1.3e-3470.08Show/hide
Query:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDAPIIHLEPD--SPSTSKYLDSNSLSLGLNLQ-SAGMQV--DTHEAGLIPADT
        MGRH SEPTMVGTSIALLQERFRQLQK+KQ+RE+KELLNLL +SNRVDA I+HLEP+     T + LDSNSLSLGLNL+ + G QV  D HEA  +P+DT
Subjt:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDAPIIHLEPD--SPSTSKYLDSNSLSLGLNLQ-SAGMQV--DTHEAGLIPADT

Query:  KFWPGKSVMASALRSFDSPDVDTTLHL
        KF P  S M S LRSFD+ +VDTTLHL
Subjt:  KFWPGKSVMASALRSFDSPDVDTTLHL

A0A7N2M9I5 Uncharacterized protein3.0e-1847.33Show/hide
Query:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDAPIIHLEPD---------SPSTSKYLDSNSLSLGLNLQSAGMQVDTHEAGLI
        M R S++ TMV +SIALLQERFRQL+K K+RRE+KELLNL +++ R+  P  H EP          +P+ S   DS SL L L  + A +Q     A   
Subjt:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDAPIIHLEPD---------SPSTSKYLDSNSLSLGLNLQSAGMQVDTHEAGLI

Query:  PADTKFWPGKSVMASALRSFDSPDVDTTLHL
        P  T  WP  + MAS  RSF++ DVDT+LHL
Subjt:  PADTKFWPGKSVMASALRSFDSPDVDTTLHL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G16447.1 unknown protein1.3e-0533.33Show/hide
Query:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDAPI-IHLEPDSPSTSKYLDSNS--------LSLGLNLQSAGMQVDTHEAGLI
        + R   E  ++ +SI LLQERFRQLQ+ ++ R ++ELLN     N  D  +  + EP S    ++L  NS        LSL L   S    ++       
Subjt:  MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDAPI-IHLEPDSPSTSKYLDSNS--------LSLGLNLQSAGMQVDTHEAGLI

Query:  PADTKFWPGK-SVMASALRSFDSPDVDTTLHL
        P+    WP K       +  +D  DVDT+LHL
Subjt:  PADTKFWPGK-SVMASALRSFDSPDVDTTLHL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAGGCACAGTAGTGAACCTACCATGGTTGGTACCTCCATAGCTCTGTTACAAGAAAGGTTCAGACAGTTGCAGAAAGACAAGCAGAGGAGAGAGAAGAAGGAGCT
TCTTAACCTGTTATCCGATTCAAATAGGGTTGATGCCCCTATAATACATTTAGAACCCGATAGCCCGTCGACCTCAAAATATTTGGACTCTAATTCCCTCTCCCTTGGCC
TGAACTTGCAGAGTGCAGGTATGCAAGTTGATACCCATGAAGCCGGGTTGATACCTGCTGACACCAAGTTCTGGCCCGGAAAGTCAGTCATGGCAAGTGCGTTAAGAAGT
TTCGATAGTCCAGATGTCGATACCACTCTTCATCTTTAG
mRNA sequenceShow/hide mRNA sequence
GCTGCATCTACTTTCAAGCCAAGGCTGTTCTAAATGACAAAAAAAATGACACAAACCATTACCTAACCTTTTATTCCTCAAGCTTCCTTCCAAACACTACCATCCATTTT
TGTTTTGGACTTGCTACATACATTTGTTTTCCATCAAAAGTCTTTTTCTCTAAAATATTCACCAACCCAACCCTCTCTAGACCAGCCTTTAAACTCTTGCTGTTTGGAAT
TTCTTCCAAAGTAGCTGATTCTTCTCTGTATCACCTTAATGATTATCAATCAGAAATGACCAAATTCCCCTATCCTAATGATAAGATCTAAACATTCTAATCCTATAAGT
ACACATTCTCCAAAACTGTAGACTTCACACTACAAGAAGTTGCAGCTAAAACTTGACCATCGTCACGGACCCTTGAAAGCGTTTCGCGGATGGGTAGGCACAGTAGTGAA
CCTACCATGGTTGGTACCTCCATAGCTCTGTTACAAGAAAGGTTCAGACAGTTGCAGAAAGACAAGCAGAGGAGAGAGAAGAAGGAGCTTCTTAACCTGTTATCCGATTC
AAATAGGGTTGATGCCCCTATAATACATTTAGAACCCGATAGCCCGTCGACCTCAAAATATTTGGACTCTAATTCCCTCTCCCTTGGCCTGAACTTGCAGAGTGCAGGTA
TGCAAGTTGATACCCATGAAGCCGGGTTGATACCTGCTGACACCAAGTTCTGGCCCGGAAAGTCAGTCATGGCAAGTGCGTTAAGAAGTTTCGATAGTCCAGATGTCGAT
ACCACTCTTCATCTTTAGATAGTTTCTTCAACTAGTATTTCTGTGAGTTTATTTGCTTGCTTCTTCTCTCCCTTTTAAGAATGAACAGTGTGTGTTGAACTGATACCTAG
TGTGATCAATATGTATTGATGATGCTTTTGTAGATTTTGTGAGTTTTTCTTCTTGGATAGCTCTAGGAATGTGCCTGATGAGAAAGGGTGAGAAGAGATGGAAAATAACA
CTGAAATGAGGTGATCTCTTTTATCAGTTTGATCATGTTTAAATCTCTCTATTGTTTTCTTCTTCTTCTTCTTCTTCCATGAAGTTCAGTCTTTTCTGTATGAAAGTTTA
TTTGGGGAGGTAGAAAGAAATTATTCGATGAAACCGTTACATTGTAGTTGATAATTTAGGATCGGTTTGATGTACGAGAGAAACTATAAAAGTATTTTAAGTGGTTATAT
AAGGGTAAGAGATAATTATATTGTAACAGTGTTAATAGGGGTTTTTTTTTTAGTACAAGTTGGGGG
Protein sequenceShow/hide protein sequence
MGRHSSEPTMVGTSIALLQERFRQLQKDKQRREKKELLNLLSDSNRVDAPIIHLEPDSPSTSKYLDSNSLSLGLNLQSAGMQVDTHEAGLIPADTKFWPGKSVMASALRS
FDSPDVDTTLHL