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Sed0008849 (gene) of Chayote v1 genome

Gene IDSed0008849
OrganismSechium edule (Chayote v1)
DescriptionClassical arabinogalactan protein
Genome locationLG05:29564688..29565954
RNA-Seq ExpressionSed0008849
SyntenySed0008849
Gene Ontology termsNA
InterPro domainsIPR044959 - Classical arabinogalactan protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF8404655.1 hypothetical protein HHK36_009543 [Tetracentron sinense]3.2e-1053.68Show/hide
Query:  VFFVLFALVAGS-LGQAPAAAPASSPTKPPPASSPKSAPPPASTPSPSLAPQTAAPSPSTVTPPPASSPAS--SPPAPPTAPSDSPASIPPTTPSIASPP
        V  ++ ALV GS LGQAP AAP ++PT+ PPASSP + PPP+ +PSP   P  ++P+P+T  P  A SP S  SPPAPPTA   SP    P+   I +PP
Subjt:  VFFVLFALVAGS-LGQAPAAAPASSPTKPPPASSPKSAPPPASTPSPSLAPQTAAPSPSTVTPPPASSPAS--SPPAPPTAPSDSPASIPPTTPSIASPP

Query:  AQAPSPASTPGNGAAVNRIAASGSVIAAVISFALLL
        A  P   STP NGAA+NRIA SGS   AV + ALLL
Subjt:  AQAPSPASTPGNGAAVNRIAASGSVIAAVISFALLL

XP_015885267.2 classical arabinogalactan protein 5 [Ziziphus jujuba]4.4e-1254Show/hide
Query:  SAFVFFVLFALVAGS-LGQAPAAAPASSPTKPPPASSPKS-APPPASTPSPSLAPQTAAP------------SPSTVTPPPASSPASSPPAPPTAPSDSP
        SAFV F +FALVAGS L QAP AAP +SPTK PPASSP   A PPA TP+P+++P T++P            SPS    PPASSP  SPPAPPT+    P
Subjt:  SAFVFFVLFALVAGS-LGQAPAAAPASSPTKPPPASSPKS-APPPASTPSPSLAPQTAAP------------SPSTVTPPPASSPASSPPAPPTAPSDSP

Query:  ASIPPTTPSIASPPAQAPSPASTPGNGAAVNRIAASGSVIAAVISFALLL
        +S  P  PSI+  P Q  SP S PGNGAA+NR+A +GS+ A V + ++LL
Subjt:  ASIPPTTPSIASPPAQAPSPASTPGNGAAVNRIAASGSVIAAVISFALLL

XP_018833931.2 classical arabinogalactan protein 10-like [Juglans regia]5.2e-1351.03Show/hide
Query:  MASSSAFVFFVLFALVAGS-LGQAPAAAPASSPTKPPPASSPKSAPPP----ASTPSPSLAPQTAAPSPSTVTPPPASSPASSPPAPPTAPSDSPASIPP
        MA S      +LFALVAGS   QAP  AP  SPTK PPASSPK+APPP      TPSP+++P  +AP+P++   PP  +P+SSPPAPPT    SPAS P 
Subjt:  MASSSAFVFFVLFALVAGS-LGQAPAAAPASSPTKPPPASSPKSAPPP----ASTPSPSLAPQTAAPSPSTVTPPPASSPASSPPAPPTAPSDSPASIPP

Query:  TTPSIASPPAQAPSPASTPGNGAAVNRIAASGSVIAAVISFALLL
          PSI++PP+ + SP  +PGNGAA+N ++ +GSV + +++  LL+
Subjt:  TTPSIASPPAQAPSPASTPGNGAAVNRIAASGSVIAAVISFALLL

XP_022937303.1 lysine-rich arabinogalactan protein 19-like [Cucurbita moschata]7.0e-3476.71Show/hide
Query:  MASSSAFVFFVLFALVAGSLGQAPAAAPASSPTKPPPASSPKSAP------PPASTPSPSLAPQTAAPSPSTVTPPPASSPASSPPAPPTAPSDSPASIP
        MASSSAFVF VL AL+AGSLGQAP AAPASSPTK PP SSPKSAP      PPAS+PS SLAP  AAPSPST T PPA SPA+SPPAPPTAPS+SPA  P
Subjt:  MASSSAFVFFVLFALVAGSLGQAPAAAPASSPTKPPPASSPKSAP------PPASTPSPSLAPQTAAPSPSTVTPPPASSPASSPPAPPTAPSDSPASIP

Query:  PTTPSIASPPAQAPSPASTPGNGAAVNRIAASGSVIAAVISFALLL
           PSI++PPA APSPASTPGNG AVNRIA SGS+I AVIS ALLL
Subjt:  PTTPSIASPPAQAPSPASTPGNGAAVNRIAASGSVIAAVISFALLL

XP_040997605.1 classical arabinogalactan protein 10-like [Juglans microcarpa x Juglans regia]2.6e-1251.02Show/hide
Query:  MASSSAFVFFVLFALVAGS-LGQAPAAAPASSPTKPPPASSPKSAPPPA--STPSPS----LAPQTAAPSPSTVTPPPASSPASSPPAPPTAPSDSPASI
        MA S      +LFALVAGS   QAP  AP  SPTK PPASSPK+APPPA  STP+PS    ++P  +AP+P++   PP  +P+SSPPAPPT+   +P S 
Subjt:  MASSSAFVFFVLFALVAGS-LGQAPAAAPASSPTKPPPASSPKSAPPPA--STPSPS----LAPQTAAPSPSTVTPPPASSPASSPPAPPTAPSDSPASI

Query:  PPTTPSIASPPAQAPSPASTPGNGAAVNRIAASGSVIAAVISFALLL
        P +  SI+SPP+ + SPA +PGNGAA+N ++ +GSV + +++  LL+
Subjt:  PPTTPSIASPPAQAPSPASTPGNGAAVNRIAASGSVIAAVISFALLL

TrEMBL top hitse value%identityAlignment
A0A2I4FQK5 classical arabinogalactan protein 10-like2.5e-1351.03Show/hide
Query:  MASSSAFVFFVLFALVAGS-LGQAPAAAPASSPTKPPPASSPKSAPPP----ASTPSPSLAPQTAAPSPSTVTPPPASSPASSPPAPPTAPSDSPASIPP
        MA S      +LFALVAGS   QAP  AP  SPTK PPASSPK+APPP      TPSP+++P  +AP+P++   PP  +P+SSPPAPPT    SPAS P 
Subjt:  MASSSAFVFFVLFALVAGS-LGQAPAAAPASSPTKPPPASSPKSAPPP----ASTPSPSLAPQTAAPSPSTVTPPPASSPASSPPAPPTAPSDSPASIPP

Query:  TTPSIASPPAQAPSPASTPGNGAAVNRIAASGSVIAAVISFALLL
          PSI++PP+ + SP  +PGNGAA+N ++ +GSV + +++  LL+
Subjt:  TTPSIASPPAQAPSPASTPGNGAAVNRIAASGSVIAAVISFALLL

A0A4S4ECI5 Uncharacterized protein2.1e-0751.08Show/hide
Query:  SAFVFFVLFALVAGSLGQAPAAAPASSPTKPPPASSPKSAPPPASTPSPSLAPQTAAPSPSTVTPPPASSPASSPPAPPTAPSDSPASIPPTTPSIASPP
        S+ V  ++FALVAGS   A A APA+SPTK P AS PK+A  P+  P+PS+              PP SSP SSPPAPPTAP+ +     PTT SIAS P
Subjt:  SAFVFFVLFALVAGSLGQAPAAAPASSPTKPPPASSPKSAPPPASTPSPSLAPQTAAPSPSTVTPPPASSPASSPPAPPTAPSDSPASIPPTTPSIASPP

Query:  AQAP------SPASTPGNGAAVNRIAASGSVIAAVISFA
         Q+P      SP++TP +GAAVNR+A +GS  AAV+ FA
Subjt:  AQAP------SPASTPGNGAAVNRIAASGSVIAAVISFA

A0A5N6RKA1 Uncharacterized protein9.3e-0846.41Show/hide
Query:  SAFVFFVLFALVAGS-LGQAPAAAPASSPTKPPPASSPKSAPPPASTP---------SPSLAPQTAAPSPSTVTPPPASSPASSPPA--PPTAPSDSPAS
        S+FV  +L ALVA S L Q P AAP +SPTK PP S+P +A PP + P         SP+++P ++ P+P+  TPP +S  ASSP A  PP  P+ SP  
Subjt:  SAFVFFVLFALVAGS-LGQAPAAAPASSPTKPPPASSPKSAPPPASTP---------SPSLAPQTAAPSPSTVTPPPASSPASSPPA--PPTAPSDSPAS

Query:  IPPTTPSIASPPAQ-----APSPASTPGNGAAVNRIAASGSVIAAVISFALLL
         P + PS ++PP+        SP STPG+ AA+NR+AA+GSV +A+++ ALLL
Subjt:  IPPTTPSIASPPAQ-----APSPASTPGNGAAVNRIAASGSVIAAVISFALLL

A0A6J1FFR5 lysine-rich arabinogalactan protein 19-like3.4e-3476.71Show/hide
Query:  MASSSAFVFFVLFALVAGSLGQAPAAAPASSPTKPPPASSPKSAP------PPASTPSPSLAPQTAAPSPSTVTPPPASSPASSPPAPPTAPSDSPASIP
        MASSSAFVF VL AL+AGSLGQAP AAPASSPTK PP SSPKSAP      PPAS+PS SLAP  AAPSPST T PPA SPA+SPPAPPTAPS+SPA  P
Subjt:  MASSSAFVFFVLFALVAGSLGQAPAAAPASSPTKPPPASSPKSAP------PPASTPSPSLAPQTAAPSPSTVTPPPASSPASSPPAPPTAPSDSPASIP

Query:  PTTPSIASPPAQAPSPASTPGNGAAVNRIAASGSVIAAVISFALLL
           PSI++PPA APSPASTPGNG AVNRIA SGS+I AVIS ALLL
Subjt:  PTTPSIASPPAQAPSPASTPGNGAAVNRIAASGSVIAAVISFALLL

A0A6P4AHL3 classical arabinogalactan protein 52.1e-1254Show/hide
Query:  SAFVFFVLFALVAGS-LGQAPAAAPASSPTKPPPASSPKS-APPPASTPSPSLAPQTAAP------------SPSTVTPPPASSPASSPPAPPTAPSDSP
        SAFV F +FALVAGS L QAP AAP +SPTK PPASSP   A PPA TP+P+++P T++P            SPS    PPASSP  SPPAPPT+    P
Subjt:  SAFVFFVLFALVAGS-LGQAPAAAPASSPTKPPPASSPKS-APPPASTPSPSLAPQTAAP------------SPSTVTPPPASSPASSPPAPPTAPSDSP

Query:  ASIPPTTPSIASPPAQAPSPASTPGNGAAVNRIAASGSVIAAVISFALLL
        +S  P  PSI+  P Q  SP S PGNGAA+NR+A +GS+ A V + ++LL
Subjt:  ASIPPTTPSIASPPAQAPSPASTPGNGAAVNRIAASGSVIAAVISFALLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTCCTCCGCCTTCGTCTTCTTCGTCCTCTTCGCCCTGGTCGCCGGCTCCTTAGGCCAAGCTCCGGCCGCCGCACCGGCCTCCTCTCCAACCAAGCCGCCACC
TGCCTCCTCTCCGAAATCCGCTCCGCCTCCGGCTTCAACGCCATCTCCATCCCTTGCGCCGCAGACCGCTGCTCCATCTCCTTCCACTGTAACTCCACCGCCGGCTTCGT
CGCCAGCTTCTTCTCCACCGGCTCCACCTACAGCTCCATCGGACTCTCCGGCCTCCATTCCGCCAACAACACCTTCGATCGCAAGTCCTCCTGCTCAGGCTCCCTCGCCG
GCCTCAACTCCCGGCAATGGCGCTGCCGTGAACAGAATCGCAGCCTCCGGATCTGTCATCGCGGCTGTAATTTCCTTCGCTCTTCTCCTCTAA
mRNA sequenceShow/hide mRNA sequence
CTCCATCTTCAATCTCTGCAACTCAAATCCAACTTCCCATTTTCTCCTCTCTCATCCATGGCTTCCTCCTCCGCCTTCGTCTTCTTCGTCCTCTTCGCCCTGGTCGCCGG
CTCCTTAGGCCAAGCTCCGGCCGCCGCACCGGCCTCCTCTCCAACCAAGCCGCCACCTGCCTCCTCTCCGAAATCCGCTCCGCCTCCGGCTTCAACGCCATCTCCATCCC
TTGCGCCGCAGACCGCTGCTCCATCTCCTTCCACTGTAACTCCACCGCCGGCTTCGTCGCCAGCTTCTTCTCCACCGGCTCCACCTACAGCTCCATCGGACTCTCCGGCC
TCCATTCCGCCAACAACACCTTCGATCGCAAGTCCTCCTGCTCAGGCTCCCTCGCCGGCCTCAACTCCCGGCAATGGCGCTGCCGTGAACAGAATCGCAGCCTCCGGATC
TGTCATCGCGGCTGTAATTTCCTTCGCTCTTCTCCTCTAAATGCGATCGGTCTCGCAGATCTTAGGGTTTCGTCATCCGCATTACTCGTAATTTCCTTAGTGTATTATTT
ATTCCACTCTTATTTTTGGTGTATTTAGGATGAATCTAGAGGATTTTAGACGCTGGCCGCCTGTGATGATCATTATTGTTATTTATTTGGATTTCTAGGTTTTTACTGTG
CTTGAATCGATTTGCTTTTGCCGTTACTAATTAGATCTCATTTTATCTCTTACTTATTCTGCCGGATCTCTGCTTTTCCTTTCTCTTCTCCGGCTGAACTCCGCGATGGC
GGCGGCGAAGGTACAGAACTGAACTGTAGTAATTCTTTAAGCTTTTTAGAGATAATAATTTCATGGATGGTGATAACAATGGAGTCGAATACAGCTGTAATTATTGGTGT
TTTTTTTTTTAATTTTATTTGTAAAAGAATGATAATGGGGTTTCATGGTGAAAAAAGGAACGAAAACAAATGCAAAGGTATTGTAGGCTGTCGCTTTGTGTGCGCCTATG
CTTTCCCCCATGTGCCGCTCAACGGTACTTTCTCTTTTTCAAAAGAAAACGCTAATGGGTTCCATTTGGGCCCAATTAGCCCATATCGTTTCTCTACATTCATGGAATCT
GATTTCTGGTTTTTTTCTTTTTTCTTTTTTTATATGATTAGAAAATGAGGGAGGTTTTCATGTTTTGATCAGAGCATAATTCATAGGATGAAGTATGAGTTCAATTCCTA
TGGAGTATGGAATATGATTTAGTGATAAAAAATTATTGTAATAAAGCAACCAATAAG
Protein sequenceShow/hide protein sequence
MASSSAFVFFVLFALVAGSLGQAPAAAPASSPTKPPPASSPKSAPPPASTPSPSLAPQTAAPSPSTVTPPPASSPASSPPAPPTAPSDSPASIPPTTPSIASPPAQAPSP
ASTPGNGAAVNRIAASGSVIAAVISFALLL