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Sed0008867 (gene) of Chayote v1 genome

Gene IDSed0008867
OrganismSechium edule (Chayote v1)
Descriptionnuclear transcription factor Y subunit C-1-like
Genome locationLG07:13031819..13032172
RNA-Seq ExpressionSed0008867
SyntenySed0008867
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577185.1 hypothetical protein SDJN03_24759, partial [Cucurbita argyrosperma subsp. sororia]4.3e-4579.83Show/hide
Query:  MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHET
        MRQAGAYSG  YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAP+VFSKACELF+EELT+RSWMIAMQ+KKRML KEDVASAILATD+FDFL+GLIFHET
Subjt:  MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHET

Query:  ATA--SASAADIAQTESLS
         TA  +++AA++ ++E++S
Subjt:  ATA--SASAADIAQTESLS

XP_004146566.1 nuclear transcription factor Y subunit C-3 [Cucumis sativus]4.3e-4582.91Show/hide
Query:  MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHET
        MRQAGAYSG MYWKTGPHSLPLARIKKIMKKSGEEVKMIS EAP+VFSKACELFIEELT+RSWMIAMQ+KKRML KEDVASAILATD+FDFL+GLIF+ET
Subjt:  MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHET

Query:  ATASASAADIAQTESLS
        AT +A+  D+ ++E++S
Subjt:  ATASASAADIAQTESLS

XP_022931515.1 nuclear transcription factor Y subunit C-4-like [Cucurbita moschata]4.3e-4579.83Show/hide
Query:  MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHET
        MRQAGAYSG  YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAP+VFSKACELF+EELT+RSWMIAMQ+KKRML KEDVASAILATD+FDFL+GLIFHET
Subjt:  MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHET

Query:  ATA--SASAADIAQTESLS
         TA  +++AA++ ++E++S
Subjt:  ATA--SASAADIAQTESLS

XP_023552994.1 nuclear transcription factor Y subunit C-4-like [Cucurbita pepo subsp. pepo]1.7e-4683.9Show/hide
Query:  MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHET
        MRQAGAYSG  YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAP+VFSKACELFIEELT+RSWMIAMQ+KKRML KEDVASAILATD+FDFL+GLIFHET
Subjt:  MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHET

Query:  ATASASAA-DIAQTESLS
         T +ASAA D+A++E++S
Subjt:  ATASASAA-DIAQTESLS

XP_038877432.1 nuclear transcription factor Y subunit C-1-like [Benincasa hispida]1.0e-4684.17Show/hide
Query:  MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHET
        MRQAGAYSG MYWKTGPHSLPLARIKKIMKKSGEEVKMIS EAP+VFSKACELFIEELT+RSWMIAMQ+KKRML KEDVASAILATD+FDFL+GLIF+ET
Subjt:  MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHET

Query:  ATASASAA---DIAQTESLS
        ATA+A+AA   D+A++E++S
Subjt:  ATASASAA---DIAQTESLS

TrEMBL top hitse value%identityAlignment
A0A0A0KZN6 CBFD_NFYB_HMF domain-containing protein2.1e-4582.91Show/hide
Query:  MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHET
        MRQAGAYSG MYWKTGPHSLPLARIKKIMKKSGEEVKMIS EAP+VFSKACELFIEELT+RSWMIAMQ+KKRML KEDVASAILATD+FDFL+GLIF+ET
Subjt:  MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHET

Query:  ATASASAADIAQTESLS
        AT +A+  D+ ++E++S
Subjt:  ATASASAADIAQTESLS

A0A1S3BSA0 nuclear transcription factor Y subunit C-1-like3.6e-4582.91Show/hide
Query:  MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHET
        MRQAGAYSG MYWKTGPHSLPLARIKKIMKKSGEEVKMIS EAP+VFSKACELFIEELT+RSWMIAMQ+KKRML KEDVASAILATD+FDFL+GLIF+ET
Subjt:  MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHET

Query:  ATASASAADIAQTESLS
        A   A+A D+ ++E++S
Subjt:  ATASASAADIAQTESLS

A0A5A7TSI3 Nuclear transcription factor Y subunit C-1-like3.6e-4582.91Show/hide
Query:  MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHET
        MRQAGAYSG MYWKTGPHSLPLARIKKIMKKSGEEVKMIS EAP+VFSKACELFIEELT+RSWMIAMQ+KKRML KEDVASAILATD+FDFL+GLIF+ET
Subjt:  MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHET

Query:  ATASASAADIAQTESLS
        A   A+A D+ ++E++S
Subjt:  ATASASAADIAQTESLS

A0A6J1EZM2 nuclear transcription factor Y subunit C-4-like2.1e-4579.83Show/hide
Query:  MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHET
        MRQAGAYSG  YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAP+VFSKACELF+EELT+RSWMIAMQ+KKRML KEDVASAILATD+FDFL+GLIFHET
Subjt:  MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHET

Query:  ATA--SASAADIAQTESLS
         TA  +++AA++ ++E++S
Subjt:  ATA--SASAADIAQTESLS

A0A6J1J883 nuclear transcription factor Y subunit C-4-like6.1e-4581.82Show/hide
Query:  MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHET
        MRQAGAYSG  YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAP+VFSKACELFIEELT+RSWMIAM +KKRML KEDVASAILATD+FDFL+GLIFHET
Subjt:  MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHET

Query:  ---ATASASAA-DIAQTESLS
           A+ASASAA D+ ++E++S
Subjt:  ---ATASASAA-DIAQTESLS

SwissProt top hitse value%identityAlignment
A6BLW4 Nuclear transcription factor Y subunit C-21.5e-2160.44Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHETATASASAA
        H LPLARIKKIM K+ E+V+MIS EAP++F+KACELFI ELT RSW+ A +NK+R LQ+ DVA+AI  TD+FDFLV ++  E A     +A
Subjt:  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHETATASASAA

Q655V5 Nuclear transcription factor Y subunit C-41.2e-2164.56Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLI
        HSLPLARIKKIM K+ E+V+MIS EAP++F+KACE+FI ELT RSWM   +NK+R LQK D+A+AI  TD++DFLV ++
Subjt:  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLI

Q9FMV5 Nuclear transcription factor Y subunit C-41.2e-2160.44Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHETATASASAA
        H LPLARIKKIM K+ E+V+MIS EAP++F+KACELFI ELT RSW+ A +NK+R LQK D+A+AI  TD+FDFLV ++  E       AA
Subjt:  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHETATASASAA

Q9SMP0 Nuclear transcription factor Y subunit C-11.5e-2165.82Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLI
        H LPLARIKKIM K+ E+V+MIS EAP++F+KACELFI ELT RSW+ A +NK+R LQK D+A+AI  TD+FDFLV ++
Subjt:  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLI

Q9ZVL3 Nuclear transcription factor Y subunit C-34.5e-2162.2Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHE
        HSLPLARIKKIM K+ E+V+MIS EAP+VF++ACE+FI ELT RSW    +NK+R LQK D+A+A+  TD+FDFLV ++  E
Subjt:  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHE

Arabidopsis top hitse value%identityAlignment
AT1G08970.4 nuclear factor Y, subunit C93.2e-2262.2Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHE
        HSLPLARIKKIM K+ E+V+MIS EAP+VF++ACE+FI ELT RSW    +NK+R LQK D+A+A+  TD+FDFLV ++  E
Subjt:  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHE

AT1G54830.2 nuclear factor Y, subunit C33.2e-2262.2Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHE
        HSLPLARIKKIM K+ E+V+MIS EAP+VF++ACE+FI ELT RSW    +NK+R LQK D+A+A+  TD+FDFLV ++  E
Subjt:  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHE

AT3G48590.1 nuclear factor Y, subunit C11.1e-2265.82Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLI
        H LPLARIKKIM K+ E+V+MIS EAP++F+KACELFI ELT RSW+ A +NK+R LQK D+A+AI  TD+FDFLV ++
Subjt:  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLI

AT5G63470.1 nuclear factor Y, subunit C48.4e-2360.44Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHETATASASAA
        H LPLARIKKIM K+ E+V+MIS EAP++F+KACELFI ELT RSW+ A +NK+R LQK D+A+AI  TD+FDFLV ++  E       AA
Subjt:  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHETATASASAA

AT5G63470.2 nuclear factor Y, subunit C48.4e-2360.44Show/hide
Query:  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHETATASASAA
        H LPLARIKKIM K+ E+V+MIS EAP++F+KACELFI ELT RSW+ A +NK+R LQK D+A+AI  TD+FDFLV ++  E       AA
Subjt:  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHETATASASAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCAAGCGGGAGCGTATTCGGGGGCGATGTACTGGAAGACGGGGCCGCACTCGCTGCCGTTGGCGAGGATAAAGAAGATAATGAAGAAGTCGGGGGAGGAAGTGAA
GATGATTTCGTGCGAGGCTCCCATGGTGTTCTCGAAGGCCTGCGAGCTGTTCATCGAGGAATTGACGAGGCGATCCTGGATGATTGCGATGCAGAATAAGAAGCGGATGC
TTCAGAAAGAGGATGTGGCTTCTGCCATTTTGGCTACTGATCTTTTCGACTTTCTTGTCGGATTGATCTTCCATGAAACCGCCACCGCCTCTGCCTCCGCTGCTGATATT
GCTCAAACTGAATCTCTATCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGCAAGCGGGAGCGTATTCGGGGGCGATGTACTGGAAGACGGGGCCGCACTCGCTGCCGTTGGCGAGGATAAAGAAGATAATGAAGAAGTCGGGGGAGGAAGTGAA
GATGATTTCGTGCGAGGCTCCCATGGTGTTCTCGAAGGCCTGCGAGCTGTTCATCGAGGAATTGACGAGGCGATCCTGGATGATTGCGATGCAGAATAAGAAGCGGATGC
TTCAGAAAGAGGATGTGGCTTCTGCCATTTTGGCTACTGATCTTTTCGACTTTCTTGTCGGATTGATCTTCCATGAAACCGCCACCGCCTCTGCCTCCGCTGCTGATATT
GCTCAAACTGAATCTCTATCCTGA
Protein sequenceShow/hide protein sequence
MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHETATASASAADI
AQTESLS