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Sed0008869 (gene) of Chayote v1 genome

Gene IDSed0008869
OrganismSechium edule (Chayote v1)
DescriptionRING-box 1
Genome locationLG03:12117872..12128625
RNA-Seq ExpressionSed0008869
SyntenySed0008869
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0005634 - nucleus (cellular component)
GO:0031461 - cullin-RING ubiquitin ligase complex (cellular component)
GO:0008270 - zinc ion binding (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
GO:0097602 - cullin family protein binding (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR024766 - Zinc finger, RING-H2-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008342455.1 RING-box protein 1a [Malus domestica]5.1e-6296.58Show/hide
Query:  MATLDSDVAMIPAGEPSSTAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLDSDV MIPAGE SS+AG SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVAMIPAGEPSSTAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKYGH
        QVCPLDNSEWEFQKYGH
Subjt:  QVCPLDNSEWEFQKYGH

XP_015953299.1 RING-box protein 1a [Arachis duranensis]8.6e-6294.87Show/hide
Query:  MATLDSDVAMIPAGEPSSTAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLDSDV M+PAGEPSS+A   STKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVAMIPAGEPSSTAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKYGH
        QVCPLDNSEWEFQKYGH
Subjt:  QVCPLDNSEWEFQKYGH

XP_019451212.1 PREDICTED: RING-box protein 1a [Lupinus angustifolius]1.1e-6197.44Show/hide
Query:  MATLDSDVAMIPAGEPSSTAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLDSDVAMIPAGEPSS+AG SS KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVAMIPAGEPSSTAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKYGH
        QVCPLDNSEWEFQKYGH
Subjt:  QVCPLDNSEWEFQKYGH

XP_027926839.1 RING-box protein 1a isoform X2 [Vigna unguiculata]1.3e-6295.73Show/hide
Query:  MATLDSDVAMIPAGEPSSTAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLDSDV M+PAGEPSS+AG SS+KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVAMIPAGEPSSTAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKYGH
        QVCPLDNSEWEFQKYGH
Subjt:  QVCPLDNSEWEFQKYGH

XP_038889977.1 RING-box protein 1a-like isoform X1 [Benincasa hispida]1.1e-6194.87Show/hide
Query:  MATLDSDVAMIPAGEPSSTAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLDSDV M+PAG+ SS+AG SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVAMIPAGEPSSTAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKYGH
        QVCPLDNSEWEFQKYGH
Subjt:  QVCPLDNSEWEFQKYGH

TrEMBL top hitse value%identityAlignment
A0A445E0S8 RING-type domain-containing protein4.2e-6294.87Show/hide
Query:  MATLDSDVAMIPAGEPSSTAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLDSDV M+PAGEPSS+A   STKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVAMIPAGEPSSTAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKYGH
        QVCPLDNSEWEFQKYGH
Subjt:  QVCPLDNSEWEFQKYGH

A0A498JHP5 RING-type domain-containing protein2.4e-6296.58Show/hide
Query:  MATLDSDVAMIPAGEPSSTAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLDSDV MIPAGE SS+AG SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVAMIPAGEPSSTAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKYGH
        QVCPLDNSEWEFQKYGH
Subjt:  QVCPLDNSEWEFQKYGH

A0A540LC82 RING-type domain-containing protein2.4e-6296.58Show/hide
Query:  MATLDSDVAMIPAGEPSSTAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLDSDV MIPAGE SS+AG SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVAMIPAGEPSSTAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKYGH
        QVCPLDNSEWEFQKYGH
Subjt:  QVCPLDNSEWEFQKYGH

A0A5N5F037 RING-box protein 1a2.4e-6296.58Show/hide
Query:  MATLDSDVAMIPAGEPSSTAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLDSDV MIPAGE SS+AG SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVAMIPAGEPSSTAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKYGH
        QVCPLDNSEWEFQKYGH
Subjt:  QVCPLDNSEWEFQKYGH

A0A6P4CMK0 RING-box protein 1a4.2e-6294.87Show/hide
Query:  MATLDSDVAMIPAGEPSSTAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
        MATLDSDV M+PAGEPSS+A   STKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR
Subjt:  MATLDSDVAMIPAGEPSSTAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR

Query:  QVCPLDNSEWEFQKYGH
        QVCPLDNSEWEFQKYGH
Subjt:  QVCPLDNSEWEFQKYGH

SwissProt top hitse value%identityAlignment
P62877 E3 ubiquitin-protein ligase RBX11.7e-5284.26Show/hide
Query:  MIPAGEPSSTAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSE
        M  A +  + +G++S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN E
Subjt:  MIPAGEPSSTAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSE

Query:  WEFQKYGH
        WEFQKYGH
Subjt:  WEFQKYGH

P62878 E3 ubiquitin-protein ligase RBX11.7e-5284.26Show/hide
Query:  MIPAGEPSSTAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSE
        M  A +  + +G++S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN E
Subjt:  MIPAGEPSSTAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSE

Query:  WEFQKYGH
        WEFQKYGH
Subjt:  WEFQKYGH

Q8QG64 RING-box protein 14.9e-5283.33Show/hide
Query:  MIPAGEPSSTAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSE
        M  A +  + + ++S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN E
Subjt:  MIPAGEPSSTAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSE

Query:  WEFQKYGH
        WEFQKYGH
Subjt:  WEFQKYGH

Q940X7 RING-box protein 1a1.5e-6193.22Show/hide
Query:  MATLDSDVAMIPAGEPSST-AGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT
        MATLDSDV MIPAGE SS+ A SSS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT
Subjt:  MATLDSDVAMIPAGEPSST-AGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT

Query:  RQVCPLDNSEWEFQKYGH
        RQVCPLDNSEWEFQKYGH
Subjt:  RQVCPLDNSEWEFQKYGH

Q9M2B0 RING-box protein 1b2.6e-5383.9Show/hide
Query:  MATLDSDVAMIPAGEPSS-TAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT
        MA+L+SDV M   GE SS +  SSS+K  KRFE+KKW+AVALWAWDIVVDNCAICRNHIMDLCIEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKT
Subjt:  MATLDSDVAMIPAGEPSS-TAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT

Query:  RQVCPLDNSEWEFQKYGH
        RQVCPLD  EWEFQKYGH
Subjt:  RQVCPLDNSEWEFQKYGH

Arabidopsis top hitse value%identityAlignment
AT3G05870.1 anaphase-promoting complex/cyclosome 115.8e-1639.56Show/hide
Query:  KPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL--KTRQV-CPLDNSEWEFQK
        K K   I  W+AVA W WD   + C ICR      C +C+        ++C + WG CNHAFH HCI +W+  +T Q  CP+   EW+F++
Subjt:  KPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL--KTRQV-CPLDNSEWEFQK

AT3G42830.1 RING/U-box superfamily protein1.9e-5483.9Show/hide
Query:  MATLDSDVAMIPAGEPSS-TAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT
        MA+L+SDV M   GE SS +  SSS+K  KRFE+KKW+AVALWAWDIVVDNCAICRNHIMDLCIEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKT
Subjt:  MATLDSDVAMIPAGEPSS-TAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT

Query:  RQVCPLDNSEWEFQKYGH
        RQVCPLD  EWEFQKYGH
Subjt:  RQVCPLDNSEWEFQKYGH

AT5G20570.1 RING-box 11.1e-6293.22Show/hide
Query:  MATLDSDVAMIPAGEPSST-AGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT
        MATLDSDV MIPAGE SS+ A SSS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT
Subjt:  MATLDSDVAMIPAGEPSST-AGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT

Query:  RQVCPLDNSEWEFQKYGH
        RQVCPLDNSEWEFQKYGH
Subjt:  RQVCPLDNSEWEFQKYGH

AT5G20570.2 RING-box 11.2e-5877.46Show/hide
Query:  MATLDSDVAMIPAGEPSST-AGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW------------------
        MATLDSDV MIPAGE SS+ A SSS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW                  
Subjt:  MATLDSDVAMIPAGEPSST-AGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW------------------

Query:  ------GVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
              GVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Subjt:  ------GVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

AT5G20570.3 RING-box 11.6e-5880.15Show/hide
Query:  MATLDSDVAMIPAGEPSST-AGSSSTKKPKRFEIKKWNAVALWAWD------------------IVVDNCAICRNHIMDLCIECQANQASATSEECTVAW
        MATLDSDV MIPAGE SS+ A SSS KK KRFEIKKW+AVALWAW                   IVVDNCAICRNHIMDLCIECQANQASATSEECTVAW
Subjt:  MATLDSDVAMIPAGEPSST-AGSSSTKKPKRFEIKKWNAVALWAWD------------------IVVDNCAICRNHIMDLCIECQANQASATSEECTVAW

Query:  GVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
        GVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Subjt:  GVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACCTTGGACTCCGACGTAGCGATGATTCCCGCCGGTGAGCCTTCGAGCACCGCCGGTTCATCTTCCACCAAGAAACCTAAGCGTTTCGAGATAAAAAAGTGGAA
CGCCGTCGCGCTTTGGGCATGGGATATCGTTGTTGATAACTGTGCGATTTGCAGGAATCATATCATGGATCTTTGTATTGAGTGCCAAGCAAATCAGGCTAGCGCAACCA
GCGAGGAATGTACTGTGGCTTGGGGAGTGTGTAATCATGCATTTCATTTTCACTGTATCAGTAGATGGTTGAAGACGCGTCAAGTTTGCCCATTGGATAATAGCGAGTGG
GAATTTCAGAAGTATGGTCACTAG
mRNA sequenceShow/hide mRNA sequence
CATAGATATACAGTACAATATAAAAATTAAATGGGAAATAATTTTCTTTAAACATAATAAAAATACGCAATAGAGAAATTCAGCCCGCCCGCACAATCAACACAGAGGAA
GAAGAAGTTTTCTTGCGAGCTATGGCGACCTTGGACTCCGACGTAGCGATGATTCCCGCCGGTGAGCCTTCGAGCACCGCCGGTTCATCTTCCACCAAGAAACCTAAGCG
TTTCGAGATAAAAAAGTGGAACGCCGTCGCGCTTTGGGCATGGGATATCGTTGTTGATAACTGTGCGATTTGCAGGAATCATATCATGGATCTTTGTATTGAGTGCCAAG
CAAATCAGGCTAGCGCAACCAGCGAGGAATGTACTGTGGCTTGGGGAGTGTGTAATCATGCATTTCATTTTCACTGTATCAGTAGATGGTTGAAGACGCGTCAAGTTTGC
CCATTGGATAATAGCGAGTGGGAATTTCAGAAGTATGGTCACTAGATCTTTGCTGTGTTAAGGGTTTGGATCCTTAAAATTGTGATGGAGCTGGTAATATTGTTGAAGAT
TGATTTCTCTCCCTTTTATGGTTTCTGAAAATATCGATTTGAAGATGCATTTTTTTGCACTAAAAGAATTAAAATGCCAGCCAACTTGAATGCATTATTTGATTTTATTT
CGTAGTTGTTTATAGGAATAGACCAGCACTTGAACGTAATTCTTGCTTTGTTGCTTATGAACTTGTATTTATGTTTATATTAGTAGGGAAAATCCGGATCTTATTGTTTG
CCAATTTGCCATTTGGTTCTTGTTTTTGTTTGTTGGATATACTTTGACAAAAAAGTATTCATGCTCGCCTTAGGCTGAAATACTTCTATAGTGCATATGGATAATTGTTG
GCAATATTTTGAAACATATCATGTGGTTGAAACAATGATAAGATGT
Protein sequenceShow/hide protein sequence
MATLDSDVAMIPAGEPSSTAGSSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEW
EFQKYGH