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Sed0008882 (gene) of Chayote v1 genome

Gene IDSed0008882
OrganismSechium edule (Chayote v1)
DescriptionLisH and RanBPM domains containing protein
Genome locationLG06:6496399..6497860
RNA-Seq ExpressionSed0008882
SyntenySed0008882
Gene Ontology termsGO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR006594 - LIS1 homology motif


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3556377.1 hypothetical protein F2Q69_00013549 [Brassica cretica]1.3e-0630.32Show/hide
Query:  KNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM-----------------------------------------------
        K  I  DEWEKKLN + + KED++TLVM+FL++E  VEAA  F +ES +K ++                                               
Subjt:  KNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM-----------------------------------------------

Query:  ---------TAPEVNQG--------KDLTLPHCLKMLAWEEEKLEEKTTYPQLSN
                 TA EVN          KD  LP  LKML W + +L+EK  YP +++
Subjt:  ---------TAPEVNQG--------KDLTLPHCLKMLAWEEEKLEEKTTYPQLSN
KAF7803515.1 glucose-induced degradation protein 8-like protein [Senna tora]3.8e-0661.7Show/hide
Query:  KNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQES
        K  I G+EWEKKLNN+ I KED++ LVM+FL++E LV+AA  FG ES
Subjt:  KNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQES
KAF8093348.1 hypothetical protein N665_0384s0034 [Sinapis alba]4.2e-0547.62Show/hide
Query:  NADSSDEDRFKNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM
        N D  D    K  I  DEWEKKLN + + K+D++TLVM+FL++E  VEAA  F +ES +K ++
Subjt:  NADSSDEDRFKNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM
KAF8093349.1 hypothetical protein N665_0384s0034 [Sinapis alba]4.2e-0550Show/hide
Query:  NADSSDEDRFKNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSK
        N D  D    K  I  DEWEKKLN + + K+D++TLVM+FL++E  VEAA  F +ES +K
Subjt:  NADSSDEDRFKNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSK
KAG2317196.1 hypothetical protein Bca52824_020318 [Brassica carinata]5.5e-0547.62Show/hide
Query:  NADSSDEDRFKNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM
        N D  D    K  I  DEWEKKLN + + K+D++TLVM+FL++E  VEAA  F +ES +K ++
Subjt:  NADSSDEDRFKNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM
TrEMBL top hitse value%identityAlignment
A0A078GM96 BnaA03g60080D protein4.5e-0552.83Show/hide
Query:  KNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM
        K  I  DEWEKKLN + + KED++TLVM+FL++E  VEAA  F +ES +K ++
Subjt:  KNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM
A0A0D3BVC8 Uncharacterized protein4.5e-0552.83Show/hide
Query:  KNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM
        K  I  DEWEKKLN + + KED++TLVM+FL++E  VEAA  F +ES +K ++
Subjt:  KNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM
A0A3P6CMT8 Uncharacterized protein (Fragment)3.5e-0550Show/hide
Query:  DEDRFKNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM
        D+   K  I  DEWEKKLN + + KED++TLVM+FL++E  VEAA  F +ES +K ++
Subjt:  DEDRFKNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM
A0A6J0JEW2 glucose-induced degradation protein 8 homolog isoform X13.5e-0547.62Show/hide
Query:  NADSSDEDRFKNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM
        N D  D    K  I  +EWEKKLN + + KED++TLVM+FL++E  VEAA  F +ES +K ++
Subjt:  NADSSDEDRFKNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM
M4FBV8 Uncharacterized protein3.5e-0541.98Show/hide
Query:  PPLRVPLFPSSDEEETNDNADSSDEDRFKNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM
        P L  PL P+     T+           K  I  DEWEKKLN + + KED++TLVM+FL++E  VEAA  F +ES +K ++
Subjt:  PPLRVPLFPSSDEEETNDNADSSDEDRFKNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM
SwissProt top hitse value%identityAlignment
Q84WK5 Protein GID8 homolog2.7e-0744Show/hide
Query:  LFPSSDEEETNDNADSSDEDRFKNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM
        +F +  EE+  D A S      K  I  +EWEKKLN + + KED++TLVM+FL++E  VEAA  F +ES +K ++
Subjt:  LFPSSDEEETNDNADSSDEDRFKNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM
Arabidopsis top hitse value%identityAlignment
AT1G61150.1 LisH and RanBPM domains containing protein1.9e-0844Show/hide
Query:  LFPSSDEEETNDNADSSDEDRFKNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM
        +F +  EE+  D A S      K  I  +EWEKKLN + + KED++TLVM+FL++E  VEAA  F +ES +K ++
Subjt:  LFPSSDEEETNDNADSSDEDRFKNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM
AT1G61150.2 LisH and RanBPM domains containing protein3.3e-0850.94Show/hide
Query:  KNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM
        K  I  +EWEKKLN + + KED++TLVM+FL++E  VEAA  F +ES +K ++
Subjt:  KNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM
AT1G61150.4 LisH and RanBPM domains containing protein3.3e-0850.94Show/hide
Query:  KNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM
        K  I  +EWEKKLN + + KED++TLVM+FL++E  VEAA  F +ES +K ++
Subjt:  KNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM
AT1G61150.5 LisH and RanBPM domains containing protein7.4e-0852Show/hide
Query:  IPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM
        I  +EWEKKLN + + KED++TLVM+FL++E  VEAA  F +ES +K ++
Subjt:  IPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM
AT1G61150.6 LisH and RanBPM domains containing protein3.3e-0850.94Show/hide
Query:  KNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM
        K  I  +EWEKKLN + + KED++TLVM+FL++E  VEAA  F +ES +K ++
Subjt:  KNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTCCGATTCGAGTTCTGGTTCCGATTCCAGTTCTCACAGTGTTGTCATGGACGATCCTCCTCCTCTTCGAGTCCCACTGTTTCCATCATCAGATGAGGAGGAAAC
CAATGATAATGCTGATAGTAGTGATGAGGACAGATTCAAAAATTGTATCCCAGGAGATGAATGGGAGAAAAAGCTGAACAATATTGTGATCAACAAGGAAGACATCGACA
CTTTGGTGATGGATTTCTTGATTTCAGAAGATTTGGTTGAAGCCGCCTCTGCATTTGGACAAGAATCTGTCTCTAAGGGCCAAATGACAGCCCCTGAAGTTAATCAAGGA
AAAGATTTAACTCTACCTCATTGCTTGAAGATGCTGGCATGGGAGGAAGAGAAACTCGAGGAAAAGACCACATATCCTCAGTTAAGCAACAATTTGCTAGGCTTCGAAGA
AGGGTAA
mRNA sequenceShow/hide mRNA sequence
GAGAAAAATACGGGTTCTCTTTTCAAATTAGTTGAAGTATCGCCCATCCGCAGCCTAGCTTAAACCCTTAACTTTTCGCGATCCAGAACAAAAAATGAATTCCGATTCGA
GTTCTGGTTCCGATTCCAGTTCTCACAGTGTTGTCATGGACGATCCTCCTCCTCTTCGAGTCCCACTGTTTCCATCATCAGATGAGGAGGAAACCAATGATAATGCTGAT
AGTAGTGATGAGGACAGATTCAAAAATTGTATCCCAGGAGATGAATGGGAGAAAAAGCTGAACAATATTGTGATCAACAAGGAAGACATCGACACTTTGGTGATGGATTT
CTTGATTTCAGAAGATTTGGTTGAAGCCGCCTCTGCATTTGGACAAGAATCTGTCTCTAAGGGCCAAATGACAGCCCCTGAAGTTAATCAAGGAAAAGATTTAACTCTAC
CTCATTGCTTGAAGATGCTGGCATGGGAGGAAGAGAAACTCGAGGAAAAGACCACATATCCTCAGTTAAGCAACAATTTGCTAGGCTTCGAAGAAGGGTAAAAATAGGAC
AATAGTTTGGCATGTAAGTCAGATATCTTCATAAAATGACATAAGAAACGACGTAAACTGCCGGTCAATTTCTTTTCTTGCATTCATATACGAACTTAACATCATTCAAT
TGTATTGAATGTGTTCTTGATGTTTTTTTACCTATGTTGGTTGACAACTTGATGTTTGTGGAAATGGAACCACTTTGAATATGGTTAGTTTAGAAAAAGTTGTTTCTCGG
GG
Protein sequenceShow/hide protein sequence
MNSDSSSGSDSSSHSVVMDDPPPLRVPLFPSSDEEETNDNADSSDEDRFKNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQMTAPEVNQG
KDLTLPHCLKMLAWEEEKLEEKTTYPQLSNNLLGFEEG