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Sed0008893 (gene) of Chayote v1 genome

Gene IDSed0008893
OrganismSechium edule (Chayote v1)
Descriptiondouble-stranded RNA-binding protein 1-like
Genome locationLG01:69293013..69294776
RNA-Seq ExpressionSed0008893
SyntenySed0008893
Gene Ontology termsGO:0009733 - response to auxin (biological process)
GO:0009735 - response to cytokinin (biological process)
GO:0009737 - response to abscisic acid (biological process)
GO:0010267 - production of ta-siRNAs involved in RNA interference (biological process)
GO:0010305 - leaf vascular tissue pattern formation (biological process)
GO:0010589 - leaf proximal/distal pattern formation (biological process)
GO:0016075 - rRNA catabolic process (biological process)
GO:0031054 - pre-miRNA processing (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0035279 - mRNA cleavage involved in gene silencing by miRNA (biological process)
GO:0010445 - nuclear dicing body (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0042802 - identical protein binding (molecular function)
GO:0035198 - miRNA binding (molecular function)
GO:0004525 - ribonuclease III activity (molecular function)
GO:0003725 - double-stranded RNA binding (molecular function)
InterPro domainsIPR031147 - Double-stranded RNA-binding protein
IPR011907 - Ribonuclease III


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7036276.1 Tetraspanin-18, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-0871.43Show/hide
Query:  QDLPFDSTGEMDGLRQFIEDNVDLCKWIGVIVISIQVFQIAM
        +DLPFD TGE+DGLR+FIEDNVDLCKWIG+IVIS Q   + +
Subjt:  QDLPFDSTGEMDGLRQFIEDNVDLCKWIGVIVISIQVFQIAM
XP_022159701.1 tetraspanin-20 [Momordica charantia]1.1e-0871.43Show/hide
Query:  QDLPFDSTGEMDGLRQFIEDNVDLCKWIGVIVISIQVFQIAM
        +DLPFD TGE++GLRQFIEDNVDLCKWIG+IVIS Q   + +
Subjt:  QDLPFDSTGEMDGLRQFIEDNVDLCKWIGVIVISIQVFQIAM
XP_022931236.1 tetraspanin-20-like [Cucurbita moschata]1.1e-0871.43Show/hide
Query:  QDLPFDSTGEMDGLRQFIEDNVDLCKWIGVIVISIQVFQIAM
        +DLPFD TGE+DGLR+FIEDNVDLCKWIG+IVIS Q   + +
Subjt:  QDLPFDSTGEMDGLRQFIEDNVDLCKWIGVIVISIQVFQIAM
XP_022995305.1 tetraspanin-20 [Cucurbita maxima]3.6e-0947.83Show/hide
Query:  QDLPFDSTGEMDGLRQFIEDNVDLCKWIGVIVISIQ----VFQIAMFSKVDCR----NMHKKLIVKDVIYDSLPGFSNRKAAEQSAAEVALY
        +DLPFD TGE+DGLRQFIEDNVDLCKWIG+IVI+ Q    +  I + S V  R    N ++++  +D I ++L    N  A + S A  AL+
Subjt:  QDLPFDSTGEMDGLRQFIEDNVDLCKWIGVIVISIQ----VFQIAMFSKVDCR----NMHKKLIVKDVIYDSLPGFSNRKAAEQSAAEVALY
XP_023533047.1 tetraspanin-20-like [Cucurbita pepo subsp. pepo]3.6e-0973.81Show/hide
Query:  QDLPFDSTGEMDGLRQFIEDNVDLCKWIGVIVISIQVFQIAM
        +DLPFD TGE+DGLRQFIEDNVDLCKWIG+IVIS Q   + +
Subjt:  QDLPFDSTGEMDGLRQFIEDNVDLCKWIGVIVISIQVFQIAM
TrEMBL top hitse value%identityAlignment
A0A0A0LRU8 Uncharacterized protein1.1e-0880.43Show/hide
Query:  HKKLIVKDVIYDSLPGFSNRKAAEQSAAEVALYMELSNSSDLNPRL
        H  +IV DV YDSLPGFSNRKAAEQSAAEVAL MELS SSDLNP +
Subjt:  HKKLIVKDVIYDSLPGFSNRKAAEQSAAEVALYMELSNSSDLNPRL
A0A5A7VI00 Double-stranded RNA-binding protein 1 isoform X11.1e-0880.43Show/hide
Query:  HKKLIVKDVIYDSLPGFSNRKAAEQSAAEVALYMELSNSSDLNPRL
        H  +IV DV YDSLPGFSNRKAAEQSAAEVAL MELS SSDLNP +
Subjt:  HKKLIVKDVIYDSLPGFSNRKAAEQSAAEVALYMELSNSSDLNPRL
A0A6J1E4Q2 tetraspanin-205.1e-0971.43Show/hide
Query:  QDLPFDSTGEMDGLRQFIEDNVDLCKWIGVIVISIQVFQIAM
        +DLPFD TGE++GLRQFIEDNVDLCKWIG+IVIS Q   + +
Subjt:  QDLPFDSTGEMDGLRQFIEDNVDLCKWIGVIVISIQVFQIAM
A0A6J1ET48 tetraspanin-20-like5.1e-0971.43Show/hide
Query:  QDLPFDSTGEMDGLRQFIEDNVDLCKWIGVIVISIQVFQIAM
        +DLPFD TGE+DGLR+FIEDNVDLCKWIG+IVIS Q   + +
Subjt:  QDLPFDSTGEMDGLRQFIEDNVDLCKWIGVIVISIQVFQIAM
A0A6J1K3Q7 tetraspanin-201.8e-0947.83Show/hide
Query:  QDLPFDSTGEMDGLRQFIEDNVDLCKWIGVIVISIQ----VFQIAMFSKVDCR----NMHKKLIVKDVIYDSLPGFSNRKAAEQSAAEVALY
        +DLPFD TGE+DGLRQFIEDNVDLCKWIG+IVI+ Q    +  I + S V  R    N ++++  +D I ++L    N  A + S A  AL+
Subjt:  QDLPFDSTGEMDGLRQFIEDNVDLCKWIGVIVISIQ----VFQIAMFSKVDCR----NMHKKLIVKDVIYDSLPGFSNRKAAEQSAAEVALY
SwissProt top hitse value%identityAlignment
O04492 Double-stranded RNA-binding protein 12.5e-0555.17Show/hide
Query:  HKKLIVKDVI-----YDSLPGFSNRKAAEQSAAEVALYMELSNSSDLNPRLCTCGKIH
        HK L    VI     Y+SLPGF NRKAAEQSAAEVAL  EL+ SS+L+   C    +H
Subjt:  HKKLIVKDVI-----YDSLPGFSNRKAAEQSAAEVALYMELSNSSDLNPRLCTCGKIH
Q0IQN6 Double-stranded RNA-binding protein 89.6e-0558.14Show/hide
Query:  LIVKDVIYDSLPGFSNRKAAEQSAAEVALYMELSNSSDLNPRL
        +++ +  YDSLPGF NRKAAEQSAAEVAL ME+  S   N  +
Subjt:  LIVKDVIYDSLPGFSNRKAAEQSAAEVALYMELSNSSDLNPRL
Q0IV63 Double-stranded RNA-binding protein 79.6e-0558.14Show/hide
Query:  LIVKDVIYDSLPGFSNRKAAEQSAAEVALYMELSNSSDLNPRL
        +++ +  YDSLPGF NRKAAEQSAAEVAL ME+  S   N  +
Subjt:  LIVKDVIYDSLPGFSNRKAAEQSAAEVALYMELSNSSDLNPRL
Q93XY5 Tetraspanin-183.2e-0847.62Show/hide
Query:  QDLPFDSTGEMDGLRQFIEDNVDLCKWIGVIVISIQVFQIAM
        +DLP+D TGE+  LR FIE+N+D+CKW+G+ V+++Q+  + +
Subjt:  QDLPFDSTGEMDGLRQFIEDNVDLCKWIGVIVISIQVFQIAM
Q9SVU4 Tetraspanin-206.5e-0950Show/hide
Query:  QDLPFDSTGEMDGLRQFIEDNVDLCKWIGVIVISIQVFQIAM
        +DLP+D TGE++ LR FIE+N+D+CKW+G++V++IQ+  + +
Subjt:  QDLPFDSTGEMDGLRQFIEDNVDLCKWIGVIVISIQVFQIAM
Arabidopsis top hitse value%identityAlignment
AT1G09700.1 dsRNA-binding domain-like superfamily protein1.8e-0655.17Show/hide
Query:  HKKLIVKDVI-----YDSLPGFSNRKAAEQSAAEVALYMELSNSSDLNPRLCTCGKIH
        HK L    VI     Y+SLPGF NRKAAEQSAAEVAL  EL+ SS+L+   C    +H
Subjt:  HKKLIVKDVI-----YDSLPGFSNRKAAEQSAAEVALYMELSNSSDLNPRLCTCGKIH
AT2G20230.1 Tetraspanin family protein2.3e-0947.62Show/hide
Query:  QDLPFDSTGEMDGLRQFIEDNVDLCKWIGVIVISIQVFQIAM
        +DLP+D TGE+  LR FIE+N+D+CKW+G+ V+++Q+  + +
Subjt:  QDLPFDSTGEMDGLRQFIEDNVDLCKWIGVIVISIQVFQIAM
AT4G28770.1 Tetraspanin family protein4.6e-1050Show/hide
Query:  QDLPFDSTGEMDGLRQFIEDNVDLCKWIGVIVISIQVFQIAM
        +DLP+D TGE++ LR FIE+N+D+CKW+G++V++IQ+  + +
Subjt:  QDLPFDSTGEMDGLRQFIEDNVDLCKWIGVIVISIQVFQIAM
AT4G28770.2 Tetraspanin family protein4.6e-1050Show/hide
Query:  QDLPFDSTGEMDGLRQFIEDNVDLCKWIGVIVISIQVFQIAM
        +DLP+D TGE++ LR FIE+N+D+CKW+G++V++IQ+  + +
Subjt:  QDLPFDSTGEMDGLRQFIEDNVDLCKWIGVIVISIQVFQIAM

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGCAGGATCTTCCGTTTGACTCGACTGGTGAAATGGATGGACTCAGGCAATTCATTGAAGACAATGTCGATCTATGCAAGTGGATTGGTGTCATTGTGATTTCAAT
CCAGGTGTTTCAGATTGCTATGTTTTCAAAAGTTGATTGCAGGAATATGCACAAAAAGTTGATCGTTAAGGATGTTATATATGATTCTTTACCTGGATTTTCTAATCGCA
AGGCAGCAGAGCAGTCAGCTGCTGAAGTAGCTCTTTATATGGAGCTGTCAAATTCTAGTGATCTTAACCCACGTCTCTGTACCTGTGGTAAGATTCACAACCTTCACCCC
CACATATGA
mRNA sequenceShow/hide mRNA sequence
ATGATGCAGGATCTTCCGTTTGACTCGACTGGTGAAATGGATGGACTCAGGCAATTCATTGAAGACAATGTCGATCTATGCAAGTGGATTGGTGTCATTGTGATTTCAAT
CCAGGTGTTTCAGATTGCTATGTTTTCAAAAGTTGATTGCAGGAATATGCACAAAAAGTTGATCGTTAAGGATGTTATATATGATTCTTTACCTGGATTTTCTAATCGCA
AGGCAGCAGAGCAGTCAGCTGCTGAAGTAGCTCTTTATATGGAGCTGTCAAATTCTAGTGATCTTAACCCACGTCTCTGTACCTGTGGTAAGATTCACAACCTTCACCCC
CACATATGA
Protein sequenceShow/hide protein sequence
MMQDLPFDSTGEMDGLRQFIEDNVDLCKWIGVIVISIQVFQIAMFSKVDCRNMHKKLIVKDVIYDSLPGFSNRKAAEQSAAEVALYMELSNSSDLNPRLCTCGKIHNLHP
HI