CuGenDBv2

Gene ID	Sed0008905
Organism	Sechium edule (Chayote v1)
Description	Ty3-gypsy retrotransposon protein
Genome location	LG04:6287263..6287814
RNA-Seq Expression	Sed0008905
Synteny	Sed0008905
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]

7.1e-71

73.22

Show/hide

Query:  MADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQ
        + D DTS ++R+AELE+KV ML+K VE+++FEI  LK+++E+RDAAESS TH +K   KGK +MQE QPQ+STSIASLSVQQL +MI N+I+ QYGGP Q
Subjt:  MADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQ

Query:  SYLTYSKPYTKRIDNLRMPIGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTHKWNAFDWYTDIEPETIDS
        ++  YSKPYTKRIDN+RMP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRT K NAFDWYTD+EPE+IDS
Subjt:  SYLTYSKPYTKRIDNLRMPIGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTHKWNAFDWYTDIEPETIDS

KAA0057696.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.8e-69

72.68

Show/hide

Query:  MADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQ
        + D DTS ++R+AELE+KV ML+K VE+++FEI SLK+++E+RDAAESS TH +K   KGK +MQE QPQ+STSIASLSVQQL +MI N+I+ QY GP Q
Subjt:  MADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQ

Query:  SYLTYSKPYTKRIDNLRMPIGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTHKWNAFDWYTDIEPETIDS
        ++  YSKPYTKRIDN+RMP  YQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRT K NAFDWYTD+EPE+IDS
Subjt:  SYLTYSKPYTKRIDNLRMPIGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTHKWNAFDWYTDIEPETIDS

KAA0058295.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

5.7e-68

71.04

Show/hide

Query:  MADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQ
        + + DTS + R+AELE+KV ML+K VE++++EI  LK+++E+RDAAESS  H VK  +KGK +MQE QPQ+STSIASLSVQQL +MI ++I+ QYGGP Q
Subjt:  MADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQ

Query:  SYLTYSKPYTKRIDNLRMPIGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTHKWNAFDWYTDIEPETIDS
        ++  YSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRT K NAFDWY D+EPE+ID+
Subjt:  SYLTYSKPYTKRIDNLRMPIGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTHKWNAFDWYTDIEPETIDS

KAA0059562.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

4.3e-68

71.04

Show/hide

Query:  MADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQ
        + + DTS + R+AELE+KV ML+K VE++++EI  LK+++E+RDAAESS  H VK  +KGK +MQE QPQ+STSIASLSVQQL +MI ++I+ QYGGP Q
Subjt:  MADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQ

Query:  SYLTYSKPYTKRIDNLRMPIGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTHKWNAFDWYTDIEPETIDS
        ++  YSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRT K NAFDWY D+EPE+ID+
Subjt:  SYLTYSKPYTKRIDNLRMPIGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTHKWNAFDWYTDIEPETIDS

TYK18586.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

3.3e-68

71.04

Show/hide

Query:  MADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQ
        + D D S ++R+AELE+KV ML+K VE++++EI  LK+++E+RDAAESS  H VK  +KGK +MQE QPQ+STSIASLSVQQL +MI ++I+ QYGGP Q
Subjt:  MADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQ

Query:  SYLTYSKPYTKRIDNLRMPIGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTHKWNAFDWYTDIEPETIDS
        ++  YSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRT K NAFDWY D+EPE+ID+
Subjt:  SYLTYSKPYTKRIDNLRMPIGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTHKWNAFDWYTDIEPETIDS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TZU9 Ribonuclease H

3.5e-71

73.22

Show/hide

Query:  MADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQ
        + D DTS ++R+AELE+KV ML+K VE+++FEI  LK+++E+RDAAESS TH +K   KGK +MQE QPQ+STSIASLSVQQL +MI N+I+ QYGGP Q
Subjt:  MADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQ

Query:  SYLTYSKPYTKRIDNLRMPIGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTHKWNAFDWYTDIEPETIDS
        ++  YSKPYTKRIDN+RMP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRT K NAFDWYTD+EPE+IDS
Subjt:  SYLTYSKPYTKRIDNLRMPIGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTHKWNAFDWYTDIEPETIDS

A0A5A7UU70 Ty3-gypsy retrotransposon protein

8.5e-70

72.68

Show/hide

Query:  MADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQ
        + D DTS ++R+AELE+KV ML+K VE+++FEI SLK+++E+RDAAESS TH +K   KGK +MQE QPQ+STSIASLSVQQL +MI N+I+ QY GP Q
Subjt:  MADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQ

Query:  SYLTYSKPYTKRIDNLRMPIGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTHKWNAFDWYTDIEPETIDS
        ++  YSKPYTKRIDN+RMP  YQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRT K NAFDWYTD+EPE+IDS
Subjt:  SYLTYSKPYTKRIDNLRMPIGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTHKWNAFDWYTDIEPETIDS

A0A5A7UUI7 Ty3-gypsy retrotransposon protein

2.1e-68

71.04

Show/hide

Query:  MADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQ
        + + DTS + R+AELE+KV ML+K VE++++EI  LK+++E+RDAAESS  H VK  +KGK +MQE QPQ+STSIASLSVQQL +MI ++I+ QYGGP Q
Subjt:  MADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQ

Query:  SYLTYSKPYTKRIDNLRMPIGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTHKWNAFDWYTDIEPETIDS
        ++  YSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRT K NAFDWY D+EPE+ID+
Subjt:  SYLTYSKPYTKRIDNLRMPIGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTHKWNAFDWYTDIEPETIDS

A0A5A7UXF0 Ty3-gypsy retrotransposon protein

2.7e-68

71.04

Show/hide

Query:  MADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQ
        + + DTS + R+AELE+KV ML+K VE++++EI  LK+++E+RDAAESS  H VK  +KGK +MQE QPQ+STSIASLSVQQL +MI ++I+ QYGGP Q
Subjt:  MADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQ

Query:  SYLTYSKPYTKRIDNLRMPIGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTHKWNAFDWYTDIEPETIDS
        ++  YSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRT K NAFDWY D+EPE+ID+
Subjt:  SYLTYSKPYTKRIDNLRMPIGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTHKWNAFDWYTDIEPETIDS

A0A5D3D4X3 Ty3-gypsy retrotransposon protein

1.6e-68

71.04

Show/hide

Query:  MADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQ
        + D D S ++R+AELE+KV ML+K VE++++EI  LK+++E+RDAAESS  H VK  +KGK +MQE QPQ+STSIASLSVQQL +MI ++I+ QYGGP Q
Subjt:  MADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQ

Query:  SYLTYSKPYTKRIDNLRMPIGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTHKWNAFDWYTDIEPETIDS
        ++  YSKPYTKRIDNLRMP GYQPPKFQQFDGKGNPKQHVAHF+ETCE AGTRGDLLVKQFVRT K NAFDWY D+EPE+ID+
Subjt:  SYLTYSKPYTKRIDNLRMPIGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTHKWNAFDWYTDIEPETIDS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCTGATGCAGATACGTCAGGCGATGAGAGAATAGCAGAGCTTGAAAGGAAAGTAGAGATGTTGCTGAAAACAGTTGAGGATAAAGAGTTTGAAATTACTTCTTTGAA
GCATTACCTTGAGACTCGGGATGCTGCCGAATCTAGTCAAACGCATGCTGTAAAGACTAATGAAAAAGGGAAGACTCTTATGCAAGAAGTTCAACCCCAACACTCAACTT
CTATCGCTTCGTTATCCGTCCAACAACTTAATGATATGATCACAAACACCATTAGAGCTCAATATGGCGGGCCTCCTCAAAGTTATCTCACATATTCTAAACCGTATACC
AAAAGAATTGACAATTTGAGAATGCCAATCGGGTATCAACCTCCAAAATTTCAGCAATTTGATGGAAAAGGAAACCCGAAGCAACATGTTGCTCACTTTGTCGAGACCTG
TGAAAATGCTGGGACACGTGGTGATCTCCTTGTGAAGCAATTTGTCCGGACCCATAAATGGAACGCCTTTGATTGGTACACTGACATAGAGCCTGAAACCATTGACAGTT
AG

mRNA sequence

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Protein sequence

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MADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDAAESSQTHAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPYT
KRIDNLRMPIGYQPPKFQQFDGKGNPKQHVAHFVETCENAGTRGDLLVKQFVRTHKWNAFDWYTDIEPETIDS

Sed0008905 (gene) of Chayote v1 genome