CuGenDBv2

Gene ID	Sed0008993
Organism	Sechium edule (Chayote v1)
Description	LOW QUALITY PROTEIN: uncharacterized protein At4g13200, chloroplastic
Genome location	LG09:28919443..28923048
RNA-Seq Expression	Sed0008993
Synteny	Sed0008993
Gene Ontology terms	GO:0010027 - thylakoid membrane organization (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component)
InterPro domains	IPR040003 - Plastoglobular protein 18-like

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004139667.1 uncharacterized protein At4g13200, chloroplastic [Cucumis sativus]

1.3e-18

65.05

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Query:  GDGDSRTILDAFFLGKALVEALTERIESTIGQVLGGIGRLQAEQQ-------------AKKVKGKAAREAKE-QEPVSSSIISPTTGVTSSQTTSDLSTT
        GDGDSRT+LDAFFLGKAL EALTERIESTIG+VL GIGRLQAEQQ             AKK K KAAR++KE Q PVSSS+ISP   V SS T+S     
Subjt:  GDGDSRTILDAFFLGKALVEALTERIESTIGQVLGGIGRLQAEQQ-------------AKKVKGKAAREAKE-QEPVSSSIISPTTGVTSSQTTSDLSTT

Query:  LES
         ES
Subjt:  LES

XP_008447268.1 PREDICTED: uncharacterized protein At4g13200, chloroplastic isoform X1 [Cucumis melo]

2.4e-20

67.96

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Query:  GDGDSRTILDAFFLGKALVEALTERIESTIGQVLGGIGRLQAEQQ-------------AKKVKGKAAREAKE-QEPVSSSIISPTTGVTSSQTTSDLSTT
        GDGDSRTILDAFFLGKAL EALTERIESTIG+VL GIG+LQAEQQ             AKK K KAAREAKE Q PVSSS+ISPT  V+SS T+S     
Subjt:  GDGDSRTILDAFFLGKALVEALTERIESTIGQVLGGIGRLQAEQQ-------------AKKVKGKAAREAKE-QEPVSSSIISPTTGVTSSQTTSDLSTT

Query:  LES
         ES
Subjt:  LES

XP_022154385.1 uncharacterized protein At4g13200, chloroplastic [Momordica charantia]

4.2e-17

64.84

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Query:  GDGDSRTILDAFFLGKALVEALTERIESTIGQVLGGIGRLQAEQQ-------------AKKVKGKAAREAKE-QEPVSSSIISPTTGVTSS
        GDGDSRT+LDAFFLGKAL EALTERIEST+G+VL GIGRLQAE+Q             AK+ K KAAR++ E QEP+S SI SPT  VTS+
Subjt:  GDGDSRTILDAFFLGKALVEALTERIESTIGQVLGGIGRLQAEQQ-------------AKKVKGKAAREAKE-QEPVSSSIISPTTGVTSS

XP_022960100.1 uncharacterized protein At4g13200, chloroplastic-like [Cucurbita moschata]

1.6e-16

64.95

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Query:  GDGDSRTILDAFFLGKALVEALTERIESTIGQVLGGIGRLQAEQQ-------------AKKVKGKAAREAKE-QEPV--SSSIISPTTGVTSSQTTS
        GDGDSRT+L+AFFLGKAL EALTER+ESTIG+VL GIGRLQAEQQ             AKK + KAAR+AKE Q P+  SSSI SPT  V SS T+S
Subjt:  GDGDSRTILDAFFLGKALVEALTERIESTIGQVLGGIGRLQAEQQ-------------AKKVKGKAAREAKE-QEPV--SSSIISPTTGVTSSQTTS

XP_038900031.1 uncharacterized protein At4g13200, chloroplastic [Benincasa hispida]

9.1e-20

70.53

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Query:  GDGDSRTILDAFFLGKALVEALTERIESTIGQVLGGIGRLQAEQQ-------------AKKVKGKAAREAKE-QEPVSSSIISPTTGVTSSQTTS
        GDGDSRT+LDAFFLGKAL EALTERIEST+G+VL GIGRLQAEQQ             AKK K KAAR+AKE Q PVSSSI SPT  VTSS T S
Subjt:  GDGDSRTILDAFFLGKALVEALTERIESTIGQVLGGIGRLQAEQQ-------------AKKVKGKAAREAKE-QEPVSSSIISPTTGVTSSQTTS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K6Q2 Uncharacterized protein

6.3e-19

65.05

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Query:  GDGDSRTILDAFFLGKALVEALTERIESTIGQVLGGIGRLQAEQQ-------------AKKVKGKAAREAKE-QEPVSSSIISPTTGVTSSQTTSDLSTT
        GDGDSRT+LDAFFLGKAL EALTERIESTIG+VL GIGRLQAEQQ             AKK K KAAR++KE Q PVSSS+ISP   V SS T+S     
Subjt:  GDGDSRTILDAFFLGKALVEALTERIESTIGQVLGGIGRLQAEQQ-------------AKKVKGKAAREAKE-QEPVSSSIISPTTGVTSSQTTSDLSTT

Query:  LES
         ES
Subjt:  LES

A0A1S3BHX5 uncharacterized protein At4g13200, chloroplastic isoform X1

1.2e-20

67.96

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Query:  GDGDSRTILDAFFLGKALVEALTERIESTIGQVLGGIGRLQAEQQ-------------AKKVKGKAAREAKE-QEPVSSSIISPTTGVTSSQTTSDLSTT
        GDGDSRTILDAFFLGKAL EALTERIESTIG+VL GIG+LQAEQQ             AKK K KAAREAKE Q PVSSS+ISPT  V+SS T+S     
Subjt:  GDGDSRTILDAFFLGKALVEALTERIESTIGQVLGGIGRLQAEQQ-------------AKKVKGKAAREAKE-QEPVSSSIISPTTGVTSSQTTSDLSTT

Query:  LES
         ES
Subjt:  LES

A0A6J1DJG4 uncharacterized protein At4g13200, chloroplastic

2.0e-17

64.84

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Query:  GDGDSRTILDAFFLGKALVEALTERIESTIGQVLGGIGRLQAEQQ-------------AKKVKGKAAREAKE-QEPVSSSIISPTTGVTSS
        GDGDSRT+LDAFFLGKAL EALTERIEST+G+VL GIGRLQAE+Q             AK+ K KAAR++ E QEP+S SI SPT  VTS+
Subjt:  GDGDSRTILDAFFLGKALVEALTERIESTIGQVLGGIGRLQAEQQ-------------AKKVKGKAAREAKE-QEPVSSSIISPTTGVTSS

A0A6J1GNZ1 uncharacterized protein At4g13200, chloroplastic-like

1.0e-16

62.11

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Query:  GDGDSRTILDAFFLGKALVEALTERIESTIGQVLGGIGRLQAEQQ-------------AKKVKGKAAREAKE-QEPVSSSIISPTTGVTSSQTTS
        GDGD+RT+LDAFF+GKA  E LTER+EST+G+VLG IGRLQAE+Q             AKK K KA R+AKE Q P+SSSIIS T  VTSS T S
Subjt:  GDGDSRTILDAFFLGKALVEALTERIESTIGQVLGGIGRLQAEQQ-------------AKKVKGKAAREAKE-QEPVSSSIISPTTGVTSSQTTS

A0A6J1H854 uncharacterized protein At4g13200, chloroplastic-like

7.8e-17

64.95

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Query:  GDGDSRTILDAFFLGKALVEALTERIESTIGQVLGGIGRLQAEQQ-------------AKKVKGKAAREAKE-QEPV--SSSIISPTTGVTSSQTTS
        GDGDSRT+L+AFFLGKAL EALTER+ESTIG+VL GIGRLQAEQQ             AKK + KAAR+AKE Q P+  SSSI SPT  V SS T+S
Subjt:  GDGDSRTILDAFFLGKALVEALTERIESTIGQVLGGIGRLQAEQQ-------------AKKVKGKAAREAKE-QEPV--SSSIISPTTGVTSSQTTS

SwissProt top hits

e value

%identity

Alignment

Q8LDV3 Uncharacterized protein At4g13200, chloroplastic

1.8e-10

44.44

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Query:  DDGDGDSRTILDAFFLGKALVEALTERIESTIGQVLGGIGRLQAEQQ-------------AKKVKGKAAREA-KEQEPVSSSIISPTTGVTSSQTTSDLS
        D G+ +++++LDAFFLGKAL E + ERIEST+G+VL  IG+ QAEQQ             AKK K +AARE  +EQ  V+S  ++ T    +    S  S
Subjt:  DDGDGDSRTILDAFFLGKALVEALTERIESTIGQVLGGIGRLQAEQQ-------------AKKVKGKAAREA-KEQEPVSSSIISPTTGVTSSQTTSDLS

Query:  T-TLESQS
        T T+ES++
Subjt:  T-TLESQS

Arabidopsis top hits

e value

%identity

Alignment

AT4G13200.1 unknown protein

1.3e-11

44.44

Show/hide

Query:  DDGDGDSRTILDAFFLGKALVEALTERIESTIGQVLGGIGRLQAEQQ-------------AKKVKGKAAREA-KEQEPVSSSIISPTTGVTSSQTTSDLS
        D G+ +++++LDAFFLGKAL E + ERIEST+G+VL  IG+ QAEQQ             AKK K +AARE  +EQ  V+S  ++ T    +    S  S
Subjt:  DDGDGDSRTILDAFFLGKALVEALTERIESTIGQVLGGIGRLQAEQQ-------------AKKVKGKAAREA-KEQEPVSSSIISPTTGVTSSQTTSDLS

Query:  T-TLESQS
        T T+ES++
Subjt:  T-TLESQS

Sequences

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CDS sequence

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ATGGGCAGGTGGGTTGAGGAGTTTCAAGATGAAGATGATGGTGATGGTGACAGTAGGACTATTCTTGATGCCTTTTTCTTAGGAAAAGCTTTAGTAGAAGCCTTAACTGA
GCGGATTGAGTCAACAATTGGACAAGTTTTGGGCGGCATTGGTAGGTTGCAAGCTGAACAACAAGCCAAAAAAGTGAAGGGCAAAGCAGCACGTGAGGCCAAAGAACAAG
AACCTGTCTCCTCTTCAATCATATCGCCTACAACCGGAGTTACTTCATCTCAAACTACTTCTGACCTATCAACAACTCTCGAATCTCAATCCAGATTCTGGAATATACTG
TGCCCCAGGGTTCTCTTGGTTACGAAGAGTAATGGTTACTTTGCTAATTTCTCTTGGTTATAG

mRNA sequence

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Protein sequence

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MGRWVEEFQDEDDGDGDSRTILDAFFLGKALVEALTERIESTIGQVLGGIGRLQAEQQAKKVKGKAAREAKEQEPVSSSIISPTTGVTSSQTTSDLSTTLESQSRFWNIL
CPRVLLVTKSNGYFANFSWL

Sed0008993 (gene) of Chayote v1 genome