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Sed0009001 (gene) of Chayote v1 genome

Gene IDSed0009001
OrganismSechium edule (Chayote v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationLG11:14206377..14209030
RNA-Seq ExpressionSed0009001
SyntenySed0009001
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PKU76715.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatum]3.5e-0446.88Show/hide
Query:  DKQTNKMLHYGPSVNGLYPILCNNN---CTSLETNVSVQTTSQYWHARLGHPSQSVLHTVFSYF
        DK +N +L  GP +NGLYP+    N    TS    +SVQT S  WH RLGHPS + L T+   F
Subjt:  DKQTNKMLHYGPSVNGLYPILCNNN---CTSLETNVSVQTTSQYWHARLGHPSQSVLHTVFSYF
TrEMBL top hitse value%identityAlignment
A0A2N9FL15 Integrase catalytic domain-containing protein1.0e-0441.79Show/hide
Query:  LLFYDKQTNKMLHYGPSVNGLYPILCNNNCTSLETNVSVQTTS-----QYWHARLGHPSQSVLHTVF
        LL  D  T ++L+ G S +G+YPI  +  CTS  +  +   +S     + WH+RLGHPS  VLHT+F
Subjt:  LLFYDKQTNKMLHYGPSVNGLYPILCNNNCTSLETNVSVQTTS-----QYWHARLGHPSQSVLHTVF
A0A2N9FXE9 Integrase catalytic domain-containing protein1.0e-0443.94Show/hide
Query:  LLFYDKQTNKMLHYGPSVNGLYPILCNNNCTSLETNVSVQTTS-----QYWHARLGHPSQSVLHTV
        LL  D  T ++++ G S NG+YPI  +  C S   N S    S     Q WH+RLGHPS  VLHT+
Subjt:  LLFYDKQTNKMLHYGPSVNGLYPILCNNNCTSLETNVSVQTTS-----QYWHARLGHPSQSVLHTV
A0A2N9GT58 Integrase catalytic domain-containing protein4.5e-0543.28Show/hide
Query:  LLFYDKQTNKMLHYGPSVNGLYPILCNNNCTSLETNVSVQTTS-----QYWHARLGHPSQSVLHTVF
        LL  D  T ++L+ G S +G+YPI  +  CTS  +  +   +S     Q WH+RLGHPS  VLHT+F
Subjt:  LLFYDKQTNKMLHYGPSVNGLYPILCNNNCTSLETNVSVQTTS-----QYWHARLGHPSQSVLHTVF
A0A2N9I3W1 Integrase catalytic domain-containing protein1.0e-0441.79Show/hide
Query:  LLFYDKQTNKMLHYGPSVNGLYPILCNNNCTSLETNVSVQTTS-----QYWHARLGHPSQSVLHTVF
        LL  D  T ++L+ G S +G+YPI  +  CTS  +  +   +S     + WH+RLGHPS  VLHT+F
Subjt:  LLFYDKQTNKMLHYGPSVNGLYPILCNNNCTSLETNVSVQTTS-----QYWHARLGHPSQSVLHTVF
A0A2N9J043 Integrase catalytic domain-containing protein5.9e-0545.45Show/hide
Query:  LLFYDKQTNKMLHYGPSVNGLYPILCNNNCTSLETNVSVQTTS-----QYWHARLGHPSQSVLHTV
        LL  D  T ++L+ G S NG+YPI  +  C S   N S    S     Q WH+RLGHPS  VLHT+
Subjt:  LLFYDKQTNKMLHYGPSVNGLYPILCNNNCTSLETNVSVQTTS-----QYWHARLGHPSQSVLHTV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATAGAGGAGGTTGGCGTGGCTCCAAACAGGGAAGAGGCAGGTTCAATGGAGGTCGATGAAGAAATCAATATCAACAACAAAAAAATATTCCTATCTCTAATACG
TTTGCAACCCCGACTAATCAAAACTCAAATTAGGCAAATCAATTTCTCAATGGACATGATAATGTCACAGTCGGTAATGGACAACACCTTCACATTAATCACCAACATTC
TGGTATACTTTATGCACCTATTCATTCTTTTATATTATCAAATTTACTTCAAGTTCCTCATATTTCTTCAAACTTACTCTTTGTTCACAAACTATGCATTGATAACAACT
GTAGGATTATATTTGACTTCACTCATTTTATTATTTTACGACAAGCAAACCAATAAAATGTTACACTATGGACCTAGCGTCAATGGTTTATACCCCATTTTGTGCAACAA
TAACTGCACTTCCTTGGAAACTAATGTTAGTGTCCAAACAACTTCACAATATTGGCATGCTAGACTAGGACACCCTTCACAATCTGTTCTTCACACCGTTTTTTCTTATT
TTTTCCTTTCCCTTGAAACCAAAAAATGA
mRNA sequenceShow/hide mRNA sequence
AAAAATCAAGAGATTTTTGCCTAAACACTTAAAGAGAGATTCGTTGATGGAACCCTAAAACAACAAGACAAACTTGAGAAAGAAAAGGGAATAGATGATGGAAATGAATT
TGATACATGGTTTGAGAAAGATGAAGCCCTAATCACCCTCATCAATGTAGCTTTATCTCCTTCAACACTTTCCTATGCTATCAGTTGTTCAACCTCTCAAGAATTATGGA
ACACACTAGAAAAACACTTTACATCTTCAACAAGAACGAATATCATTGGACTAAAATCAGAACTCCAAGGAATCGTAAAGAGATCAGGTGAATCTATCAACCTTTATATG
CAACGTATTAAAGATTTATTTCATCGATTAGATGCGGTTGATGTCAAGATTGACACAGAAGATCTCGTCATTTATGTTGTCAATGGTCTTCCTTCTGCGTATAATACCTT
CAAGACTTCTTTATGAACTCTCTTAACTAGTTTGTCTTTCGATGAACTTCACATTATGCTCAAGAACGAAGAAACGACTCTTGAATTACAAAACAAGAAAGCAGATTCTC
GAACGCCACCCCAATGCCTATGAATACATCATATAATAATGGAAATAGAGGAGGTTGGCGTGGCTCCAAACAGGGAAGAGGCAGGTTCAATGGAGGTCGATGAAGAAATC
AATATCAACAACAAAAAAATATTCCTATCTCTAATACGTTTGCAACCCCGACTAATCAAAACTCAAATTAGGCAAATCAATTTCTCAATGGACATGATAATGTCACAGTC
GGTAATGGACAACACCTTCACATTAATCACCAACATTCTGGTATACTTTATGCACCTATTCATTCTTTTATATTATCAAATTTACTTCAAGTTCCTCATATTTCTTCAAA
CTTACTCTTTGTTCACAAACTATGCATTGATAACAACTGTAGGATTATATTTGACTTCACTCATTTTATTATTTTACGACAAGCAAACCAATAAAATGTTACACTATGGA
CCTAGCGTCAATGGTTTATACCCCATTTTGTGCAACAATAACTGCACTTCCTTGGAAACTAATGTTAGTGTCCAAACAACTTCACAATATTGGCATGCTAGACTAGGACA
CCCTTCACAATCTGTTCTTCACACCGTTTTTTCTTATTTTTTCCTTTCCCTTGAAACCAAAAAATGATGTATGTATTGATTGCTTTGCTGGAAAGATGAATGTACAATCT
TTTTCTGATTCTAAAACCTTAACTACTTGTCTATTCTAAATCTTACATAGTGATGTATGGGGTCCTTACCCTAATTTGTCTATAAATGGCCAACGTTTTTACTTGTTTAT
TATTGATGACTTTACAAGATTTTATTGGATTTTTCCTTTATGCTACAAATCTGATGTATGTCATGTAATTCAAGATTTTGTTATCTTTATTGAAAACCAACTCACATATA
AAGTCAAATCTTTCCGTAGTGATGGTGGGGTGAATACACAAGTCATTAACTTAAATCTTTCTTTATAAAGAAAGGTATCCATCACAAAATAATCTTGTCCCTATACCCCA
GAACAAAATTTCCTAGCAGAATGCAAACATAGGCACATAATAGAGACTTCAATCTCTTAAAGCTCTCAAGCTAAAACATCTCCAAATATGTGGCCATTTGTTTTCTCTAG
AGCAATATTTTTTATTAACAGACTTCCAACACCGGTTTTAGGAAATAAATCCACGTATGAATGCCTATACAACAAACTTCTTAAGTATGCTTGGAAGTGCATGTTATCCT
CTCTTACGCCTTTACAACACAACAAAACTTCAACCTTGAACTCTCGAATGTGTATTCCTCGGTTATCTTTTAGGTCAAAAAGCCTACTTATGCTATGTACCAATCTCTAA
AACGTTTTATATTTCCAGACATGTCAAATTCAATGAGAATAAATTTCCCTTTCAATCCTTAGAAACTTCAACTATCCAAAAATCTATTCCCATTACAAGATATCAAATAA
TCTCTATTCTTCATGACATTCCAAATAACCAAGAACTTGTTGTAGCACCCATATTAGAATCTTCGATCACATCTCTACCTCTCCAAGACCAAGATCTTCACCTAGAATCA
TCTAATATTCAACTTGTTGCCTCCTTTTCATTGAACCTATGTGTCATATAGTTCCTGCACCCACTGAACCTAACCCTCCTTCCTTT
Protein sequenceShow/hide protein sequence
MEIEEVGVAPNREEAGSMEVDEEININNKKIFLSLIRLQPRLIKTQIRQINFSMDMIMSQSVMDNTFTLITNILVYFMHLFILLYYQIYFKFLIFLQTYSLFTNYALITT
VGLYLTSLILLFYDKQTNKMLHYGPSVNGLYPILCNNNCTSLETNVSVQTTSQYWHARLGHPSQSVLHTVFSYFFLSLETKK