CuGenDBv2

Gene ID	Sed0009006
Organism	Sechium edule (Chayote v1)
Description	ABC transporter F family member 4-like
Genome location	LG11:3901342..3902269
RNA-Seq Expression	Sed0009006
Synteny	Sed0009006
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008462810.1 PREDICTED: ABC transporter F family member 4-like [Cucumis melo]

2.8e-16

41.92

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Query:  KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG---------------------------------GRNQFL---------
        +KDM A HAAEQA +EAL+DD DAFTV+IG+    LD N E DANV D+T+                                  G++  L         
Subjt:  KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG---------------------------------GRNQFL---------

Query:  --KNIDALLVEQEVVGVHRTSLQAVISTCEDLVELRHKVVELHNS-------YDDYAGEKLVDLEMK
          KNID LLVEQEVVG  R++LQAV+S  E+LV+LR +V +L NS        DD AGE+L +L  K
Subjt:  --KNIDALLVEQEVVGVHRTSLQAVISTCEDLVELRHKVVELHNS-------YDDYAGEKLVDLEMK

XP_011653838.2 ABC transporter F family member 4 [Cucumis sativus]

2.8e-16

41.92

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Query:  KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG---------------------------------GRNQFL---------
        +KDM A HAAEQA +EAL+DD DAFTV+IG+    LD N E DANV D+T+                                  G++  L         
Subjt:  KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG---------------------------------GRNQFL---------

Query:  --KNIDALLVEQEVVGVHRTSLQAVISTCEDLVELRHKVVELHNS-------YDDYAGEKLVDLEMK
          KNID LLVEQEVVG  R++LQAV+S  E+LV+LR +V +L NS        DD AGE+L +L  K
Subjt:  --KNIDALLVEQEVVGVHRTSLQAVISTCEDLVELRHKVVELHNS-------YDDYAGEKLVDLEMK

XP_022157860.1 ABC transporter F family member 4-like [Momordica charantia]

1.7e-16

42.42

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Query:  KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG---------------------------------GRNQFL---------
        +KDM A HAAEQA +EAL+DD DAFTV+IG+    +D N E DANV D+T+                                  G++  L         
Subjt:  KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG---------------------------------GRNQFL---------

Query:  --KNIDALLVEQEVVGVHRTSLQAVISTCEDLVELRHKVVELHNS--------YDDYAGEKLVDL
          KNID LLVEQEVVG  RT+LQAV+S  E+LV+LR +V +L NS         DD AGE+L DL
Subjt:  --KNIDALLVEQEVVGVHRTSLQAVISTCEDLVELRHKVVELHNS--------YDDYAGEKLVDL

XP_022158213.1 ABC transporter F family member 4-like [Momordica charantia]

1.3e-16

42.42

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Query:  KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG---------------------------------GRNQFL---------
        +KDM A HAAEQA +EAL+DD DAFTV+IG+    +D N E DANV D+T+                                  G++  L         
Subjt:  KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG---------------------------------GRNQFL---------

Query:  --KNIDALLVEQEVVGVHRTSLQAVISTCEDLVELRHKVVELHNS--------YDDYAGEKLVDL
          KNID LLVEQEVVG  RT+LQAV+S  E+LV+LR +V +L NS         DD AGE+L DL
Subjt:  --KNIDALLVEQEVVGVHRTSLQAVISTCEDLVELRHKVVELHNS--------YDDYAGEKLVDL

XP_038881811.1 ABC transporter F family member 4 [Benincasa hispida]

2.2e-16

41.92

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Query:  KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG---------------------------------GRNQFL---------
        +KDM A HAAEQA +EAL+DD DAFTV+IG+    LD N E DANV D+T+                                  G++  L         
Subjt:  KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG---------------------------------GRNQFL---------

Query:  --KNIDALLVEQEVVGVHRTSLQAVISTCEDLVELRHKVVELHN-------SYDDYAGEKLVDLEMK
          KNID LLVEQEVVG  RT+LQAV+S  E+LV+LR +V +L N       + DD AGE+L +L  K
Subjt:  --KNIDALLVEQEVVGVHRTSLQAVISTCEDLVELRHKVVELHN-------SYDDYAGEKLVDLEMK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LNE5 Uncharacterized protein

1.4e-16

41.92

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Query:  KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG---------------------------------GRNQFL---------
        +KDM A HAAEQA +EAL+DD DAFTV+IG+    LD N E DANV D+T+                                  G++  L         
Subjt:  KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG---------------------------------GRNQFL---------

Query:  --KNIDALLVEQEVVGVHRTSLQAVISTCEDLVELRHKVVELHNS-------YDDYAGEKLVDLEMK
          KNID LLVEQEVVG  R++LQAV+S  E+LV+LR +V +L NS        DD AGE+L +L  K
Subjt:  --KNIDALLVEQEVVGVHRTSLQAVISTCEDLVELRHKVVELHNS-------YDDYAGEKLVDLEMK

A0A1S3CJD6 ABC transporter F family member 4-like

1.4e-16

41.92

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Query:  KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG---------------------------------GRNQFL---------
        +KDM A HAAEQA +EAL+DD DAFTV+IG+    LD N E DANV D+T+                                  G++  L         
Subjt:  KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG---------------------------------GRNQFL---------

Query:  --KNIDALLVEQEVVGVHRTSLQAVISTCEDLVELRHKVVELHNS-------YDDYAGEKLVDLEMK
          KNID LLVEQEVVG  R++LQAV+S  E+LV+LR +V +L NS        DD AGE+L +L  K
Subjt:  --KNIDALLVEQEVVGVHRTSLQAVISTCEDLVELRHKVVELHNS-------YDDYAGEKLVDLEMK

A0A5A7VGP5 ABC transporter F family member 4-like

1.4e-16

41.92

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Query:  KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG---------------------------------GRNQFL---------
        +KDM A HAAEQA +EAL+DD DAFTV+IG+    LD N E DANV D+T+                                  G++  L         
Subjt:  KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG---------------------------------GRNQFL---------

Query:  --KNIDALLVEQEVVGVHRTSLQAVISTCEDLVELRHKVVELHNS-------YDDYAGEKLVDLEMK
          KNID LLVEQEVVG  R++LQAV+S  E+LV+LR +V +L NS        DD AGE+L +L  K
Subjt:  --KNIDALLVEQEVVGVHRTSLQAVISTCEDLVELRHKVVELHNS-------YDDYAGEKLVDLEMK

A0A6J1DU74 ABC transporter F family member 4-like

8.0e-17

42.42

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Query:  KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG---------------------------------GRNQFL---------
        +KDM A HAAEQA +EAL+DD DAFTV+IG+    +D N E DANV D+T+                                  G++  L         
Subjt:  KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG---------------------------------GRNQFL---------

Query:  --KNIDALLVEQEVVGVHRTSLQAVISTCEDLVELRHKVVELHNS--------YDDYAGEKLVDL
          KNID LLVEQEVVG  RT+LQAV+S  E+LV+LR +V +L NS         DD AGE+L DL
Subjt:  --KNIDALLVEQEVVGVHRTSLQAVISTCEDLVELRHKVVELHNS--------YDDYAGEKLVDL

A0A6J1DVG6 ABC transporter F family member 4-like

6.2e-17

42.42

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Query:  KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG---------------------------------GRNQFL---------
        +KDM A HAAEQA +EAL+DD DAFTV+IG+    +D N E DANV D+T+                                  G++  L         
Subjt:  KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG---------------------------------GRNQFL---------

Query:  --KNIDALLVEQEVVGVHRTSLQAVISTCEDLVELRHKVVELHNS--------YDDYAGEKLVDL
          KNID LLVEQEVVG  RT+LQAV+S  E+LV+LR +V +L NS         DD AGE+L DL
Subjt:  --KNIDALLVEQEVVGVHRTSLQAVISTCEDLVELRHKVVELHNS--------YDDYAGEKLVDL

SwissProt top hits

e value

%identity

Alignment

Q9M1H3 ABC transporter F family member 4

2.9e-11

34.52

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Query:  KDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG---------------------------------GRNQFL----------
        K+ LA  AAE A +EA++DD DAFTV+IG+    L+ +   DANV D+T+                                  G++  L          
Subjt:  KDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG---------------------------------GRNQFL----------

Query:  -KNIDALLVEQEVVGVHRTSLQAVISTCEDLVELRHKVVELHNSY------------DDYAGEKLVDL
         KNID LLVEQEVVG  +++L AV+S  E+LV+LR +   L  S             DD  GEKL +L
Subjt:  -KNIDALLVEQEVVGVHRTSLQAVISTCEDLVELRHKVVELHNSY------------DDYAGEKLVDL

Arabidopsis top hits

e value

%identity

Alignment

AT3G54540.1 general control non-repressible 4

2.0e-12

34.52

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Query:  KDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG---------------------------------GRNQFL----------
        K+ LA  AAE A +EA++DD DAFTV+IG+    L+ +   DANV D+T+                                  G++  L          
Subjt:  KDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG---------------------------------GRNQFL----------

Query:  -KNIDALLVEQEVVGVHRTSLQAVISTCEDLVELRHKVVELHNSY------------DDYAGEKLVDL
         KNID LLVEQEVVG  +++L AV+S  E+LV+LR +   L  S             DD  GEKL +L
Subjt:  -KNIDALLVEQEVVGVHRTSLQAVISTCEDLVELRHKVVELHNSY------------DDYAGEKLVDL

Sequences

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CDS sequence

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ATGAAGAAAGATATGCTTGCTACTCATGCTGCAGAACAAGCGGGAAAAGAAGCTTTAAGGGATGATTGTGATGCTTTCACCGTTATAATCGGTACCCTAGATCGTAACCG
CGAAACTGATGCGAATGTCATAGACTTAACACTTGGAGGAAGAAACCAATTCCTTAAAAACATTGATGCCCTCTTGGTTGAACAAGAAGTGGTTGGAGTTCATAGAACTT
CCCTTCAAGCTGTCATTTCGACTTGTGAGGACCTCGTCGAGCTTCGACACAAAGTCGTTGAGTTGCATAATTCATATGATGATTATGCAGGAGAGAAGCTTGTTGATTTG
GAAATGAAATCATTAATCTTCACAACTTTAAGGTTTCCTTCCTACTGTGGGAACTTGATGATTTCGAAAGTGCGTATGAGCAGCATCGTAAAGATGACCAAGAAGTTCAA
AATCTACGAACAAGAGAATGCAGACCAGAGATCATGGAAAAAGTTTGATGCTGCTAAAGAAGCATCAAAGAAGTTGTTGAAAGTTGATTAA

mRNA sequence

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Protein sequence

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MKKDMLATHAAEQAGKEALRDDCDAFTVIIGTLDRNRETDANVIDLTLGGRNQFLKNIDALLVEQEVVGVHRTSLQAVISTCEDLVELRHKVVELHNSYDDYAGEKLVDL
EMKSLIFTTLRFPSYCGNLMISKVRMSSIVKMTKKFKIYEQENADQRSWKKFDAAKEASKKLLKVD

Sed0009006 (gene) of Chayote v1 genome