CuGenDBv2

Gene ID	Sed0009083
Organism	Sechium edule (Chayote v1)
Description	Transcription initiation factor IIF subunit beta
Genome location	LG01:23585078..23592663
RNA-Seq Expression	Sed0009083
Synteny	Sed0009083
Gene Ontology terms	GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0005674 - transcription factor TFIIF complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0008168 - methyltransferase activity (molecular function)
InterPro domains	IPR003196 - Transcription initiation factor IIF, beta subunit IPR011039 - Transcription Factor IIF, Rap30/Rap74, interaction IPR036388 - Winged helix-like DNA-binding domain superfamily IPR036390 - Winged helix DNA-binding domain superfamily IPR040450 - TFIIF beta subunit, HTH domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6602326.1 General transcription factor IIF subunit 2, partial [Cucurbita argyrosperma subsp. sororia]

3.5e-130

88.13

Show/hide

Query:  MDVDHK----SSSRKLQSNAAAAVAGADFVETNKADRAMWLLKCPQLVTHALSISPDGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADTDAGNGV
        MD D K     SSRKL SN ++ VAG DF+ETNKADRAMWLLKCPQ+VT ALS SPD  SRPVAKV VSVDP+QSNDDDD SSSTEFTMELADTD+G  +
Subjt:  MDVDHK----SSSRKLQSNAAAAVAGADFVETNKADRAMWLLKCPQLVTHALSISPDGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADTDAGNGV

Query:  RAYSLNMSTDFVPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS
        RAYSLNMSTDF+PMSVFSES QGKFTVEGKILNKFDMKPHDQNL+ YGKLCRERTH+SMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS
Subjt:  RAYSLNMSTDFVPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS

Query:  ENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETKPR
        ENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILK+LC YNNKGVHQGTYELKPEYKETCEETKPR
Subjt:  ENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETKPR

XP_004143805.1 general transcription factor IIF subunit 2 isoform X3 [Cucumis sativus]

1.1e-128

86.33

Show/hide

Query:  MDVDHK----SSSRKLQSNAAAAVAGADFVETNKADRAMWLLKCPQLVTHALSISPDGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADTDAGNGV
        MDVD K    S+SRK Q+N  + V G DF+ETNKADRAMWLLKCPQLVT ALS SPD  SRPVAKV VSVDPLQSNDDDD SSSTEFTMELA TD+GN +
Subjt:  MDVDHK----SSSRKLQSNAAAAVAGADFVETNKADRAMWLLKCPQLVTHALSISPDGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADTDAGNGV

Query:  RAYSLNMSTDFVPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS
        R+YSLNMSTDF+PMSVFSES+QGKFT+EGKILNKFDMKPHDQNLERYGKLCRERTH+SMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS
Subjt:  RAYSLNMSTDFVPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS

Query:  ENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETKPR
        E KRLRKERGELEKIIF+LFERQPYWTSKQLIQETDQPEQYMKEILK+LC YNNKGVHQGTYELKPEY+E+ E+TKPR
Subjt:  ENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETKPR

XP_008465665.1 PREDICTED: general transcription factor IIF subunit 2 isoform X2 [Cucumis melo]

1.9e-128

86.69

Show/hide

Query:  MDVDHK----SSSRKLQSNAAAAVAGADFVETNKADRAMWLLKCPQLVTHALSISPDGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADTDAGNGV
        MDVD K    S+SRK Q+N    V G DF+ETNKADRAMWLLKCPQ+VT ALS SPD  SRPVAKV VSVDPLQSNDDDD SSSTEFTMELA TD+GN +
Subjt:  MDVDHK----SSSRKLQSNAAAAVAGADFVETNKADRAMWLLKCPQLVTHALSISPDGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADTDAGNGV

Query:  RAYSLNMSTDFVPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS
        R+Y+LNMSTDF+PMSVFSES+QGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTH+SMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS
Subjt:  RAYSLNMSTDFVPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS

Query:  ENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETKPR
        E KRLRKERGELEKIIF+LFERQPYWTSKQLIQETDQPEQYMKEILK+LC YNNKGVHQGTYELKPEYKE+ EETKPR
Subjt:  ENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETKPR

XP_022964851.1 general transcription factor IIF subunit 2-like [Cucurbita moschata]

2.7e-130

88.49

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Query:  MDVDHK----SSSRKLQSNAAAAVAGADFVETNKADRAMWLLKCPQLVTHALSISPDGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADTDAGNGV
        MD D K     SSRKL SN++ A AG DF+ETNKADRAMWLLKCPQ+VT ALS SPD  SRPVAKV VSVDPLQSNDDDD SSSTEFTMELADTD+G  +
Subjt:  MDVDHK----SSSRKLQSNAAAAVAGADFVETNKADRAMWLLKCPQLVTHALSISPDGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADTDAGNGV

Query:  RAYSLNMSTDFVPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS
        RAYSLNMSTDF+PMSVFSES QGKFTVEGKILNKFDMKPHDQNL+ YGKLCRERTH+SMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS
Subjt:  RAYSLNMSTDFVPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS

Query:  ENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETKPR
        ENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILK+LC YNNKGVHQGTYELKPEYKETCEETKPR
Subjt:  ENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETKPR

XP_022990432.1 general transcription factor IIF subunit 2-like [Cucurbita maxima]

2.0e-130

88.49

Show/hide

Query:  MDVDHK----SSSRKLQSNAAAAVAGADFVETNKADRAMWLLKCPQLVTHALSISPDGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADTDAGNGV
        MD D K     SSRKL SN ++ VAG DF+ETNKADRAMWLLKCPQ+VT ALS SPD  SRPVAKV VSVDPLQSNDDDD SSSTEFTMELADTD+G  +
Subjt:  MDVDHK----SSSRKLQSNAAAAVAGADFVETNKADRAMWLLKCPQLVTHALSISPDGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADTDAGNGV

Query:  RAYSLNMSTDFVPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS
        RAYSLNMSTDF+PMSVFSES QGKFTVEGKILNKFDMKPHDQNL+ YGKLCRERTH+SMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS
Subjt:  RAYSLNMSTDFVPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS

Query:  ENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETKPR
        ENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILK+LC YNNKGVHQGTYELKPEYKETCEETKPR
Subjt:  ENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETKPR

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CPB8 Transcription initiation factor IIF subunit beta

9.3e-129

86.69

Show/hide

Query:  MDVDHK----SSSRKLQSNAAAAVAGADFVETNKADRAMWLLKCPQLVTHALSISPDGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADTDAGNGV
        MDVD K    S+SRK Q+N    V G DF+ETNKADRAMWLLKCPQ+VT ALS SPD  SRPVAKV VSVDPLQSNDDDD SSSTEFTMELA TD+GN +
Subjt:  MDVDHK----SSSRKLQSNAAAAVAGADFVETNKADRAMWLLKCPQLVTHALSISPDGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADTDAGNGV

Query:  RAYSLNMSTDFVPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS
        R+Y+LNMSTDF+PMSVFSES+QGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTH+SMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS
Subjt:  RAYSLNMSTDFVPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS

Query:  ENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETKPR
        E KRLRKERGELEKIIF+LFERQPYWTSKQLIQETDQPEQYMKEILK+LC YNNKGVHQGTYELKPEYKE+ EETKPR
Subjt:  ENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETKPR

A0A1S3CPE2 Transcription initiation factor IIF subunit beta

8.7e-127

84.86

Show/hide

Query:  MDVDHK----SSSRKLQSNAAAAVAGADFVETNKADRAMWLLKCPQLVTHALSISPDGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADTDAGNGV
        MDVD K    S+SRK Q+N    V G DF+ETNKADRAMWLLKCPQ+VT ALS SPD  SRPVAKV VSVDPLQSNDDDD SSSTEFTMELA TD+GN +
Subjt:  MDVDHK----SSSRKLQSNAAAAVAGADFVETNKADRAMWLLKCPQLVTHALSISPDGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADTDAGNGV

Query:  RAYSLNMSTDFVPMSVFSESTQ------GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKK
        R+Y+LNMSTDF+PMSVFSES+Q      GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTH+SMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKK
Subjt:  RAYSLNMSTDFVPMSVFSESTQ------GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKK

Query:  VVSKGSENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETKPR
        VVSKGSE KRLRKERGELEKIIF+LFERQPYWTSKQLIQETDQPEQYMKEILK+LC YNNKGVHQGTYELKPEYKE+ EETKPR
Subjt:  VVSKGSENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETKPR

A0A6J1BZ89 Transcription initiation factor IIF subunit beta

4.3e-126

86.02

Show/hide

Query:  MDVDHK----SSSRKLQ-SNAAAAVAGADFVETNKADRAMWLLKCPQLVTHALSISPDGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADTDAGNG
        MDVD K     SSRKLQ +N + +  G DF+ETNKADRAMWLLKCPQ VT ALS SPDG SRPVAKV VSVDPLQSNDDDD SSSTEFTMELA TD+GN 
Subjt:  MDVDHK----SSSRKLQ-SNAAAAVAGADFVETNKADRAMWLLKCPQLVTHALSISPDGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADTDAGNG

Query:  VRAYSLNMSTDFVPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKG
        +R+YSLNMSTDF+PMSVFSES  GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTH+SMTKSRQIQVIDHVTGGHMRPMPGMDV SFGAAEKKKVVSKG
Subjt:  VRAYSLNMSTDFVPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKG

Query:  SENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETKPR
        SE KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILK+LC YNNKGVHQGTYELKPEYKE+ +ETK R
Subjt:  SENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETKPR

A0A6J1HK34 Transcription initiation factor IIF subunit beta

1.3e-130

88.49

Show/hide

Query:  MDVDHK----SSSRKLQSNAAAAVAGADFVETNKADRAMWLLKCPQLVTHALSISPDGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADTDAGNGV
        MD D K     SSRKL SN++ A AG DF+ETNKADRAMWLLKCPQ+VT ALS SPD  SRPVAKV VSVDPLQSNDDDD SSSTEFTMELADTD+G  +
Subjt:  MDVDHK----SSSRKLQSNAAAAVAGADFVETNKADRAMWLLKCPQLVTHALSISPDGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADTDAGNGV

Query:  RAYSLNMSTDFVPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS
        RAYSLNMSTDF+PMSVFSES QGKFTVEGKILNKFDMKPHDQNL+ YGKLCRERTH+SMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS
Subjt:  RAYSLNMSTDFVPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS

Query:  ENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETKPR
        ENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILK+LC YNNKGVHQGTYELKPEYKETCEETKPR
Subjt:  ENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETKPR

A0A6J1JIQ3 Transcription initiation factor IIF subunit beta

9.9e-131

88.49

Show/hide

Query:  MDVDHK----SSSRKLQSNAAAAVAGADFVETNKADRAMWLLKCPQLVTHALSISPDGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADTDAGNGV
        MD D K     SSRKL SN ++ VAG DF+ETNKADRAMWLLKCPQ+VT ALS SPD  SRPVAKV VSVDPLQSNDDDD SSSTEFTMELADTD+G  +
Subjt:  MDVDHK----SSSRKLQSNAAAAVAGADFVETNKADRAMWLLKCPQLVTHALSISPDGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADTDAGNGV

Query:  RAYSLNMSTDFVPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS
        RAYSLNMSTDF+PMSVFSES QGKFTVEGKILNKFDMKPHDQNL+ YGKLCRERTH+SMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS
Subjt:  RAYSLNMSTDFVPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS

Query:  ENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETKPR
        ENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILK+LC YNNKGVHQGTYELKPEYKETCEETKPR
Subjt:  ENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETKPR

SwissProt top hits

e value

%identity

Alignment

P13984 General transcription factor IIF subunit 2

1.6e-13

31.29

Show/hide

Query:  MSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELE
        ++VF+ES+  K ++EG ++ + + +P     E Y +L R +   S    R  Q +D V   + +P+       +    ++K   K  + KR R ++  + 
Subjt:  MSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELE

Query:  KIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETK
         ++F  FE+  Y+  K L+  T QP  Y+KEILK +   N KG+H+ T+ELKPEY+    E K
Subjt:  KIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETK

P41900 General transcription factor IIF subunit 2

1.7e-15

26.14

Show/hide

Query:  VETNKADRAMWLLKCPQLVTHALSISP----------DGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADTDAGNGVRAYSLNMSTDFVPMSVFSE
        ++ + A R +WL+K P+ +      +P          + +    A+V++S+ P     D +E   TE  ++++       V   +L + +   P      
Subjt:  VETNKADRAMWLLKCPQLVTHALSISP----------DGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADTDAGNGVRAYSLNMSTDFVPMSVFSE

Query:  STQG-------KFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGEL
        ST         K  +EG+I+ K + +P   N   Y KL  E   ++    R++Q ID +   + +P+      +    E+KK     +E K+ R ++  +
Subjt:  STQG-------KFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGEL

Query:  EKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETK
          ++F  FE+  Y+  K L++ T+QP  Y+KEILK++C YN K  H+  +ELK EY+    E K
Subjt:  EKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETK

Q01750 General transcription factor IIF subunit 2

1.6e-13

28.29

Show/hide

Query:  KADRAMWLLKCPQLVTHALSISPDGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADT-DAGNGVRAYSLNMSTDFV-------PMSVFSESTQGKF
        K +  +WL+K P+ ++   + +P      V K+ ++      N    E S T    +LA+  D G    + S      FV        ++VF+ES+  K 
Subjt:  KADRAMWLLKCPQLVTHALSISPDGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADT-DAGNGVRAYSLNMSTDFV-------PMSVFSESTQGKF

Query:  TVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFERQPY
        ++EG ++ + + +P     E Y KL R +   S    R  Q  D V   + +P+       +    ++K   K  + KR R ++  +  ++F  FE+  Y
Subjt:  TVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFERQPY

Query:  WTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETK
        +  K L+  T QP  Y+KEILK +   N KG+H+ T+ELKPEY+    E K
Subjt:  WTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETK

Q2T9L9 General transcription factor IIF subunit 2

2.8e-13

27.49

Show/hide

Query:  KADRAMWLLKCPQLVTHALSISPDGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADT-DAGNGVRAYSLNMSTDFV-------PMSVFSESTQGKF
        K +  +WL+K P+ ++   + +P      V K+ ++      N    E S T    +LA+  D G    + S      FV        ++VF+ES+  K 
Subjt:  KADRAMWLLKCPQLVTHALSISPDGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADT-DAGNGVRAYSLNMSTDFV-------PMSVFSESTQGKF

Query:  TVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFERQPY
        ++EG ++ + + +P     E Y +L R +   S    R  Q +D V   + +P+       +    ++K   K  + KR R ++  +  ++F  FE+  Y
Subjt:  TVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFERQPY

Query:  WTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETK
        +  K L+  T QP  Y+K+ILK +   N KG+H+ T+ELKPEY+    E K
Subjt:  WTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETK

Q8R0A0 General transcription factor IIF subunit 2

5.6e-14

31.9

Show/hide

Query:  MSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELE
        ++VF+ES+  K ++EG ++ + + +P     E Y KL R +   S    R  Q +D V   + +P+       +    ++K   K  + KR R ++  + 
Subjt:  MSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELE

Query:  KIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETK
         ++F  FE+  Y+  K L+  T QP  Y+KEILK +   N KG+H+ T+ELKPEY+    E K
Subjt:  KIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETK

Arabidopsis top hits

e value

%identity

Alignment

AT1G75510.1 Transcription initiation factor IIF, beta subunit

5.7e-62

49.61

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Query:  VETNKADRAMWLLKCPQLVTHA---------LSISPDGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADTDAGNGVRAYSLNMSTDFVPMSVFSES
        ++  K+DR++WL+KCP +V  A          S +   S   +AK+   VDPL+      + S  EF M +   + GN  + Y+LNM TDFVPM  FS+ 
Subjt:  VETNKADRAMWLLKCPQLVTHA---------LSISPDGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADTDAGNGVRAYSLNMSTDFVPMSVFSES

Query:  TQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGM-DVLSFGAAEKKKVVS-KGSENKRLRKERGELEKIIFR
         QG    EGK+ +KFDMKP+ + +E Y +LCRERT ++M K+RQIQVID+  G HMRPMPGM  ++S  + EK+K    K +E KR R++RGELE I+F+
Subjt:  TQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGM-DVLSFGAAEKKKVVS-KGSENKRLRKERGELEKIIFR

Query:  LFERQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEE
        LFE QP WT KQL+QETDQP Q++KEIL  LC YN +G +QGTYELKPEYK++ E+
Subjt:  LFERQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEE

AT3G52270.1 Transcription initiation factor IIF, beta subunit

1.2e-72

55.34

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Query:  VETNKADRAMWLLKCPQLVTHALS--------ISPDGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADTDAGNGVRAYSLNMSTDFVPMSVFSEST
        +ET  A+R+M L+K P LV  +L           PD   RP AKV + VDPL   D+      T+F MELA  D+GN  R Y+L+MS DF+PM+VF ES+
Subjt:  VETNKADRAMWLLKCPQLVTHALS--------ISPDGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADTDAGNGVRAYSLNMSTDFVPMSVFSEST

Query:  QGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFE
         GK +VEGKI NKFDM+PH++N+E YG+LCRERT++ M K+RQIQVID+  G HMRPMPGM ++   A EKKK+ ++ SE KR R++R E+E+++F LFE
Subjt:  QGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFE

Query:  RQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEE
        RQ  WT + LIQETDQPEQ++K++LK+LC YNNKG +QGTYELKPEYK+  +E
Subjt:  RQPYWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEE

Sequences

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CDS sequence

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ATGGACGTCGACCACAAATCCAGTTCCCGGAAACTCCAAAGCAACGCCGCCGCCGCTGTCGCCGGAGCCGACTTCGTAGAGACGAACAAGGCCGACAGAGCAATGTGGCT
CTTGAAATGCCCGCAACTCGTCACTCACGCCCTTTCCATCTCGCCCGATGGCTCTTCTCGTCCCGTCGCCAAGGTCACCGTTTCTGTCGATCCTCTCCAATCCAACGACG
ACGACGATGAATCTTCATCCACTGAGTTCACTATGGAATTGGCTGACACTGACGCTGGAAATGGAGTAAGGGCCTACTCGTTGAATATGTCCACAGACTTCGTTCCAATG
TCTGTATTCTCTGAGTCAACACAAGGGAAGTTTACAGTGGAAGGGAAAATACTGAACAAATTCGACATGAAGCCACATGATCAAAATCTTGAGAGGTACGGGAAACTCTG
CCGTGAAAGAACTCACAGGTCTATGACCAAAAGCAGACAGATTCAGGTGATTGATCATGTCACAGGAGGACATATGAGGCCAATGCCAGGGATGGACGTGCTGTCATTTG
GGGCTGCAGAGAAGAAGAAAGTGGTGAGCAAGGGATCGGAAAATAAGAGGCTGAGGAAGGAGCGTGGTGAATTGGAGAAGATCATTTTTAGGCTCTTTGAAAGGCAACCA
TATTGGACCTCAAAACAATTGATTCAAGAGACCGACCAACCTGAACAATATATGAAAGAAATTCTTAAAAACCTTTGCAGCTACAACAACAAGGGTGTTCATCAAGGAAC
GTATGAGCTGAAGCCAGAATACAAGGAAACATGCGAGGAAACGAAACCACGGTAG

mRNA sequence

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TGCCTTTCTAACAAAACCGTTTTGTTTCATTCCATTTCTTCCTCTTCTCTGCAATGGACGTCGACCACAAATCCAGTTCCCGGAAACTCCAAAGCAACGCCGCCGCCGCT
GTCGCCGGAGCCGACTTCGTAGAGACGAACAAGGCCGACAGAGCAATGTGGCTCTTGAAATGCCCGCAACTCGTCACTCACGCCCTTTCCATCTCGCCCGATGGCTCTTC
TCGTCCCGTCGCCAAGGTCACCGTTTCTGTCGATCCTCTCCAATCCAACGACGACGACGATGAATCTTCATCCACTGAGTTCACTATGGAATTGGCTGACACTGACGCTG
GAAATGGAGTAAGGGCCTACTCGTTGAATATGTCCACAGACTTCGTTCCAATGTCTGTATTCTCTGAGTCAACACAAGGGAAGTTTACAGTGGAAGGGAAAATACTGAAC
AAATTCGACATGAAGCCACATGATCAAAATCTTGAGAGGTACGGGAAACTCTGCCGTGAAAGAACTCACAGGTCTATGACCAAAAGCAGACAGATTCAGGTGATTGATCA
TGTCACAGGAGGACATATGAGGCCAATGCCAGGGATGGACGTGCTGTCATTTGGGGCTGCAGAGAAGAAGAAAGTGGTGAGCAAGGGATCGGAAAATAAGAGGCTGAGGA
AGGAGCGTGGTGAATTGGAGAAGATCATTTTTAGGCTCTTTGAAAGGCAACCATATTGGACCTCAAAACAATTGATTCAAGAGACCGACCAACCTGAACAATATATGAAA
GAAATTCTTAAAAACCTTTGCAGCTACAACAACAAGGGTGTTCATCAAGGAACGTATGAGCTGAAGCCAGAATACAAGGAAACATGCGAGGAAACGAAACCACGGTAGGT
CGGGGAAATGACTGGGGGGGTATTTAGCTAACCATCATATTTAGTGCATGATTTGAGGGGTGGTGCTATTTTGTTTGGTTTTGTTCTAGTATATGCTTTAGGATTTCCTC
AATTTCTGAGACTCATTAGTAACCACTGAAATTTTGTAGAGATGTGAGTCCATCCACCATCGCGG

Protein sequence

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MDVDHKSSSRKLQSNAAAAVAGADFVETNKADRAMWLLKCPQLVTHALSISPDGSSRPVAKVTVSVDPLQSNDDDDESSSTEFTMELADTDAGNGVRAYSLNMSTDFVPM
SVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHRSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFERQP
YWTSKQLIQETDQPEQYMKEILKNLCSYNNKGVHQGTYELKPEYKETCEETKPR

Sed0009083 (gene) of Chayote v1 genome