CuGenDBv2

Gene ID	Sed0009105
Organism	Sechium edule (Chayote v1)
Description	pre-rRNA-processing protein ESF2
Genome location	LG03:642807..645022
RNA-Seq Expression	Sed0009105
Synteny	Sed0009105
Gene Ontology terms	NA
InterPro domains	IPR039119 - ABT1/Esf2

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6602402.1 Cytochrome P450 724B1, partial [Cucurbita argyrosperma subsp. sororia]

2.3e-34

38.5

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Query:  MPKEE------TTECGQESSKNI--TKRR------------------SVEFGESNINLDMNYVKKRKKI--------SIKVEAGEYEIKAHSSMKE----
        MPKEE      TT+C  ESSK +  +K++                  S E  ESNIN ++   KKRKKI        SI+ EAGEYEIKA  S+KE    
Subjt:  MPKEE------TTECGQESSKNI--TKRR------------------SVEFGESNINLDMNYVKKRKKI--------SIKVEAGEYEIKAHSSMKE----

Query:  --------------------------------------------------------------------------LPRRCLPLYML-------GLSNVLIL
                                                                                  +P    PL +         +  + + 
Subjt:  --------------------------------------------------------------------------LPRRCLPLYML-------GLSNVLIL

Query:  VIDSVLVAKKV-------------WVVFTDKRVAKKVANMLRGKRIG-----KLLFITHNINYLGNFKWDDLTEETGTH--LKDLILAHLKFLLLKRERD
          D+    K+              WV FTDKRVAKKVANML G++IG        +   NI YL  FKWDDLTEET     +++  +A L+    KRERD
Subjt:  VIDSVLVAKKV-------------WVVFTDKRVAKKVANMLRGKRIG-----KLLFITHNINYLGNFKWDDLTEETGTH--LKDLILAHLKFLLLKRERD

Query:  FYLSKVDKSRALNSIEEWLKK--KLREDSEMNSELP-----TKLIRNFPQTQPVADSAVQYKPTLSTNILAGDF
        FYLSKVDKSRAL SIEE LKK  KLREDSEMNSEL       KLIRNFPQTQPVADSAVQ KP LSTN LAG F
Subjt:  FYLSKVDKSRALNSIEEWLKK--KLREDSEMNSELP-----TKLIRNFPQTQPVADSAVQYKPTLSTNILAGDF

XP_022922239.1 pre-rRNA-processing protein ESF2 [Cucurbita moschata]

1.2e-35

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Query:  WVVFTDKRVAKKVANMLRGKRIG-----KLLFITHNINYLGNFKWDDLTEETGTH--LKDLILAHLKFLLLKRERDFYLSKVDKSRALNSIEEWLKK--K
        WV FTDKRVAKKVANML G++IG        +   NI YL  FKWDDLTEET     +++  +A L+    KRERDFYLSKVDKSRAL SIEE LKK  K
Subjt:  WVVFTDKRVAKKVANMLRGKRIG-----KLLFITHNINYLGNFKWDDLTEETGTH--LKDLILAHLKFLLLKRERDFYLSKVDKSRALNSIEEWLKK--K

Query:  LREDSEMNSELP-----TKLIRNFPQTQPVADSAVQYKPTLSTNILAGDF
        LREDSEMNSEL       KLIRNFPQTQPVADSAVQ KP LSTN LAG F
Subjt:  LREDSEMNSELP-----TKLIRNFPQTQPVADSAVQYKPTLSTNILAGDF

XP_022990094.1 pre-rRNA-processing protein ESF2 [Cucurbita maxima]

6.1e-35

38.56

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Query:  MPKEE------TTECGQESSKNI--TKRR------------------SVEFGESNINLDMNYVKKRKKI--------SIKVEAGEYEIKAHSSMKE----
        MPKEE      TT+C  ESSK +  +K++                  SVE GESNIN ++   KKR+K         SI+ EAGEYEIKA  S+KE    
Subjt:  MPKEE------TTECGQESSKNI--TKRR------------------SVEFGESNINLDMNYVKKRKKI--------SIKVEAGEYEIKAHSSMKE----

Query:  --------------------------------------------------------------------------LPRRCLPLYML-------GLSNVLIL
                                                                                  +P    PL +         +  + + 
Subjt:  --------------------------------------------------------------------------LPRRCLPLYML-------GLSNVLIL

Query:  VIDSVLVAKKV-------------WVVFTDKRVAKKVANMLRGKRIG-----KLLFITHNINYLGNFKWDDLTEETGTH--LKDLILAHLKFLLLKRERD
          D+    K+              WV FTDKRVAKKVANML G+ IG        +   NI YL  FKWDDLTEET     +++  +A L+    KRERD
Subjt:  VIDSVLVAKKV-------------WVVFTDKRVAKKVANMLRGKRIG-----KLLFITHNINYLGNFKWDDLTEETGTH--LKDLILAHLKFLLLKRERD

Query:  FYLSKVDKSRALNSIEEWLKK--KLREDSEMNSELP-----TKLIRNFPQTQPVADSAVQYKPTLSTNILAGDFNS
        FYLSKVDKSRAL SIEE LKK  KLREDSEMNSEL       KLIRNFPQTQPVADSAVQ KP LSTN LAG F S
Subjt:  FYLSKVDKSRALNSIEEWLKK--KLREDSEMNSELP-----TKLIRNFPQTQPVADSAVQYKPTLSTNILAGDFNS

XP_023528511.1 pre-rRNA-processing protein ESF2 isoform X1 [Cucurbita pepo subsp. pepo]

2.3e-34

64.67

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Query:  WVVFTDKRVAKKVANMLRGKRIG-----KLLFITHNINYLGNFKWDDLTEETGTH--LKDLILAHLKFLLLKRERDFYLSKVDKSRALNSIEEWLKKK--
        WV FTDKRVAKKVAN L G++IG        +   NI YL  FKWDDLTEET     +++  +A L+    KRERDFYLSKVDKSRAL SIEE LKKK  
Subjt:  WVVFTDKRVAKKVANMLRGKRIG-----KLLFITHNINYLGNFKWDDLTEETGTH--LKDLILAHLKFLLLKRERDFYLSKVDKSRALNSIEEWLKKK--

Query:  LREDSEMNSELP-----TKLIRNFPQTQPVADSAVQYKPTLSTNILAGDF
        LREDSEMNSEL       KLIRNFPQTQPVA+SAVQ KP LSTN LAG F
Subjt:  LREDSEMNSELP-----TKLIRNFPQTQPVADSAVQYKPTLSTNILAGDF

XP_023529204.1 pre-rRNA-processing protein ESF2 isoform X2 [Cucurbita pepo subsp. pepo]

2.3e-34

64.67

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Query:  WVVFTDKRVAKKVANMLRGKRIG-----KLLFITHNINYLGNFKWDDLTEETGTH--LKDLILAHLKFLLLKRERDFYLSKVDKSRALNSIEEWLKKK--
        WV FTDKRVAKKVAN L G++IG        +   NI YL  FKWDDLTEET     +++  +A L+    KRERDFYLSKVDKSRAL SIEE LKKK  
Subjt:  WVVFTDKRVAKKVANMLRGKRIG-----KLLFITHNINYLGNFKWDDLTEETGTH--LKDLILAHLKFLLLKRERDFYLSKVDKSRALNSIEEWLKKK--

Query:  LREDSEMNSELP-----TKLIRNFPQTQPVADSAVQYKPTLSTNILAGDF
        LREDSEMNSEL       KLIRNFPQTQPVA+SAVQ KP LSTN LAG F
Subjt:  LREDSEMNSELP-----TKLIRNFPQTQPVADSAVQYKPTLSTNILAGDF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KUC2 RRM domain-containing protein

1.5e-34

63.16

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Query:  WVVFTDKRVAKKVANMLRGKRIG-----KLLFITHNINYLGNFKWDDLTEETGTH--LKDLILAHLKFLLLKRERDFYLSKVDKSRALNSIEEWLKK--K
        WV FTDKRVAK+VANML G+ IG        +   NI YL  FKWDDLTEET     +++  LA L+    KRERDFYL+KVDKSRALNSIEE LKK  K
Subjt:  WVVFTDKRVAKKVANMLRGKRIG-----KLLFITHNINYLGNFKWDDLTEETGTH--LKDLILAHLKFLLLKRERDFYLSKVDKSRALNSIEEWLKK--K

Query:  LREDSEMNSELP-----TKLIRNFPQTQPVADSAVQYKPTLSTNILAGDFNS
        +REDSEMNS L       KLIR+FPQTQPVAD AVQ KP LSTN+LAG F S
Subjt:  LREDSEMNSELP-----TKLIRNFPQTQPVADSAVQYKPTLSTNILAGDFNS

A0A1S4E282 pre-rRNA-processing protein ESF2

3.1e-32

63.16

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Query:  WVVFTDKRVAKKVANMLRGKRIG-----KLLFITHNINYLGNFKWDDLTEETGTH--LKDLILAHLKFLLLKRERDFYLSKVDKSRALNSIEEWLKK--K
        WV FTDKRVAKKVANML G+ IG        +   NI YL  FKWDDLTEET     +++  LA L+    KRERD YL+KVDKSRALNSIEE LKK  K
Subjt:  WVVFTDKRVAKKVANMLRGKRIG-----KLLFITHNINYLGNFKWDDLTEETGTH--LKDLILAHLKFLLLKRERDFYLSKVDKSRALNSIEEWLKK--K

Query:  LREDSEMNS-----ELPTKLIRNFPQTQPVADSAVQYKPTLSTNILAGDFNS
        LREDSEMNS     +LP KLIR+FPQTQPVAD AVQ K  LSTN+LA  F S
Subjt:  LREDSEMNS-----ELPTKLIRNFPQTQPVADSAVQYKPTLSTNILAGDFNS

A0A6J1BYG4 pre-rRNA-processing protein ESF2

3.3e-34

64.71

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Query:  WVVFTDKRVAKKVANMLRGKRIG-----KLLFITHNINYLGNFKWDDLTEETGTH--LKDLILAHLKFLLLKRERDFYLSKVDKSRALNSIEEWLKK--K
        WV FTDKRVAKKVA ML G++IG        +   NI YL  FKWDDLTEET     +++  LA L+    KRERDFYLSKVDKSRALNSIEE LKK  K
Subjt:  WVVFTDKRVAKKVANMLRGKRIG-----KLLFITHNINYLGNFKWDDLTEETGTH--LKDLILAHLKFLLLKRERDFYLSKVDKSRALNSIEEWLKK--K

Query:  LREDSEMNSE------LPTKLIRNFPQTQPVADSAVQYKPTLSTNILAGDFNS
        LREDSEM+SE      LP KLIRNFPQTQPVADSAV+ K  LS NILAG F S
Subjt:  LREDSEMNSE------LPTKLIRNFPQTQPVADSAVQYKPTLSTNILAGDFNS

A0A6J1E2Q1 pre-rRNA-processing protein ESF2

6.0e-36

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Query:  WVVFTDKRVAKKVANMLRGKRIG-----KLLFITHNINYLGNFKWDDLTEETGTH--LKDLILAHLKFLLLKRERDFYLSKVDKSRALNSIEEWLKK--K
        WV FTDKRVAKKVANML G++IG        +   NI YL  FKWDDLTEET     +++  +A L+    KRERDFYLSKVDKSRAL SIEE LKK  K
Subjt:  WVVFTDKRVAKKVANMLRGKRIG-----KLLFITHNINYLGNFKWDDLTEETGTH--LKDLILAHLKFLLLKRERDFYLSKVDKSRALNSIEEWLKK--K

Query:  LREDSEMNSELP-----TKLIRNFPQTQPVADSAVQYKPTLSTNILAGDF
        LREDSEMNSEL       KLIRNFPQTQPVADSAVQ KP LSTN LAG F
Subjt:  LREDSEMNSELP-----TKLIRNFPQTQPVADSAVQYKPTLSTNILAGDF

A0A6J1JP68 pre-rRNA-processing protein ESF2

3.0e-35

38.56

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Query:  MPKEE------TTECGQESSKNI--TKRR------------------SVEFGESNINLDMNYVKKRKKI--------SIKVEAGEYEIKAHSSMKE----
        MPKEE      TT+C  ESSK +  +K++                  SVE GESNIN ++   KKR+K         SI+ EAGEYEIKA  S+KE    
Subjt:  MPKEE------TTECGQESSKNI--TKRR------------------SVEFGESNINLDMNYVKKRKKI--------SIKVEAGEYEIKAHSSMKE----

Query:  --------------------------------------------------------------------------LPRRCLPLYML-------GLSNVLIL
                                                                                  +P    PL +         +  + + 
Subjt:  --------------------------------------------------------------------------LPRRCLPLYML-------GLSNVLIL

Query:  VIDSVLVAKKV-------------WVVFTDKRVAKKVANMLRGKRIG-----KLLFITHNINYLGNFKWDDLTEETGTH--LKDLILAHLKFLLLKRERD
          D+    K+              WV FTDKRVAKKVANML G+ IG        +   NI YL  FKWDDLTEET     +++  +A L+    KRERD
Subjt:  VIDSVLVAKKV-------------WVVFTDKRVAKKVANMLRGKRIG-----KLLFITHNINYLGNFKWDDLTEETGTH--LKDLILAHLKFLLLKRERD

Query:  FYLSKVDKSRALNSIEEWLKK--KLREDSEMNSELP-----TKLIRNFPQTQPVADSAVQYKPTLSTNILAGDFNS
        FYLSKVDKSRAL SIEE LKK  KLREDSEMNSEL       KLIRNFPQTQPVADSAVQ KP LSTN LAG F S
Subjt:  FYLSKVDKSRALNSIEEWLKK--KLREDSEMNSELP-----TKLIRNFPQTQPVADSAVQYKPTLSTNILAGDFNS

SwissProt top hits

e value

%identity

Alignment

Q6CFT1 Pre-rRNA-processing protein ESF2

3.4e-04

30.22

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Query:  WVVFTDKRVAKKVANMLRGKRIGKLLFITH-----NINYLGNFKWDDLTEETG--THLKDLILAHLKFLLLKRERDFYLSKVDKSRALNSIEEWLKKKLR
        W  FT KR AK  A+ L G  IG      H     N  YL  FKW DL+E+    TH +   L   +     RE   Y+  ++KS+A     E  +++  
Subjt:  WVVFTDKRVAKKVANMLRGKRIGKLLFITH-----NINYLGNFKWDDLTEETG--THLKDLILAHLKFLLLKRERDFYLSKVDKSRALNSIEEWLKKKLR

Query:  EDSEMNSELPTKLI-RNFPQTQPVADSAVQYKPTLSTNI
        E+     E P K + R+F Q +  +  A + K  L  ++
Subjt:  EDSEMNSELPTKLI-RNFPQTQPVADSAVQYKPTLSTNI

Arabidopsis top hits

e value

%identity

Alignment

AT3G56510.1 RNA-binding (RRM/RBD/RNP motifs) family protein

5.9e-20

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Query:  WVVFTDKRVAKKVANMLRGKRIG-----KLLFITHNINYLGNFKWDDLTEETGTHLKDLILAHLKFLLL---KRERDFYLSKVDKSRALNSIEEWL--KK
        WV F  K VAK+VA+ML G++IG      + +   NI YL  FKWDDLTEE     K  I      ++L   KRE+DFYLSK++KSRA+  I+  +  K+
Subjt:  WVVFTDKRVAKKVANMLRGKRIG-----KLLFITHNINYLGNFKWDDLTEETGTHLKDLILAHLKFLLL---KRERDFYLSKVDKSRALNSIEEWL--KK

Query:  KLREDSEMNSE----LPTKLIRNFPQTQPVADSAVQYKPTLSTNILAGDF
        K++E+S  N+E     P + I  F Q + + +   Q KP LST+ LA  F
Subjt:  KLREDSEMNSE----LPTKLIRNFPQTQPVADSAVQYKPTLSTNILAGDF

AT3G56510.2 RNA-binding (RRM/RBD/RNP motifs) family protein

5.9e-20

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Query:  WVVFTDKRVAKKVANMLRGKRIG-----KLLFITHNINYLGNFKWDDLTEETGTHLKDLILAHLKFLLL---KRERDFYLSKVDKSRALNSIEEWL--KK
        WV F  K VAK+VA+ML G++IG      + +   NI YL  FKWDDLTEE     K  I      ++L   KRE+DFYLSK++KSRA+  I+  +  K+
Subjt:  WVVFTDKRVAKKVANMLRGKRIG-----KLLFITHNINYLGNFKWDDLTEETGTHLKDLILAHLKFLLL---KRERDFYLSKVDKSRALNSIEEWL--KK

Query:  KLREDSEMNSE----LPTKLIRNFPQTQPVADSAVQYKPTLSTNILAGDF
        K++E+S  N+E     P + I  F Q + + +   Q KP LST+ LA  F
Subjt:  KLREDSEMNSE----LPTKLIRNFPQTQPVADSAVQYKPTLSTNILAGDF

Sequences

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CDS sequence

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ATGCCCAAGGAGGAGACAACTGAATGTGGCCAAGAATCTAGTAAGAATATAACAAAAAGAAGATCTGTTGAGTTTGGGGAAAGCAACATAAACCTTGATATGAACTATGT
GAAAAAGAGAAAGAAGATTTCTATCAAGGTTGAGGCCGGAGAATATGAAATTAAAGCACATAGTTCTATGAAAGAGTTGCCAAGAAGGTGCTTACCCTTGTACATGCTTG
GCTTGTCAAATGTTTTGATTTTAGTTATTGATTCTGTATTAGTTGCCAAGAAGGTATGGGTTGTATTTACTGATAAAAGAGTTGCCAAGAAGGTGGCTAATATGTTACGT
GGTAAACGAATAGGTAAACTTTTATTTATTACTCATAACATCAATTATTTAGGTAACTTCAAGTGGGATGATCTTACTGAAGAAACTGGTACACACCTCAAAGACTTGAT
CCTGGCCCATCTTAAATTTCTGCTGCTAAAGAGGGAGAGGGATTTCTATCTTTCTAAAGTTGATAAATCACGTGCATTGAATTCCATTGAAGAATGGCTAAAGAAGAAGT
TGCGAGAAGATTCAGAGATGAATTCTGAACTACCTACAAAACTGATTCGCAACTTCCCTCAAACACAACCAGTTGCAGATTCTGCAGTACAATACAAACCGACACTATCT
ACTAATATCCTGGCTGGGGATTTCAACTCCAAATGA

mRNA sequence

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Protein sequence

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MPKEETTECGQESSKNITKRRSVEFGESNINLDMNYVKKRKKISIKVEAGEYEIKAHSSMKELPRRCLPLYMLGLSNVLILVIDSVLVAKKVWVVFTDKRVAKKVANMLR
GKRIGKLLFITHNINYLGNFKWDDLTEETGTHLKDLILAHLKFLLLKRERDFYLSKVDKSRALNSIEEWLKKKLREDSEMNSELPTKLIRNFPQTQPVADSAVQYKPTLS
TNILAGDFNSK

Sed0009105 (gene) of Chayote v1 genome