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Sed0009115 (gene) of Chayote v1 genome

Gene IDSed0009115
OrganismSechium edule (Chayote v1)
Description60S ribosomal protein L35a-1
Genome locationLG07:40985457..40987595
RNA-Seq ExpressionSed0009115
SyntenySed0009115
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0015031 - protein transport (biological process)
GO:0016192 - vesicle-mediated transport (biological process)
GO:0042273 - ribosomal large subunit biogenesis (biological process)
GO:0005789 - endoplasmic reticulum membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001780 - Ribosomal protein L35A
IPR009000 - Translation protein, beta-barrel domain superfamily
IPR018266 - Ribosomal protein L35Ae, conserved site
IPR038661 - Ribosomal protein L35A superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008463199.1 PREDICTED: 60S ribosomal protein L35a-1 [Cucumis melo]9.8e-5595.54Show/hide
Query:  MVKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMG
        MVKG QGERVRLY RGTILGYKRSKSNQYPNTSLLQIEGVNSK+EVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKV RPHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMG

Query:  DKVRVFMYPSNI
        D+VRVFMYPSNI
Subjt:  DKVRVFMYPSNI

XP_022139205.1 60S ribosomal protein L35a-1-like [Momordica charantia]1.7e-5493.75Show/hide
Query:  MVKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMG
        MVKG +GERVRLYIRGT+LGYKRSKSNQYPNTSLLQIEGVNSK+EVSWYQGKRLAYIYKAKVKKNG+HYRCIWGKV RPHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMG

Query:  DKVRVFMYPSNI
        D+VRVFMYPSNI
Subjt:  DKVRVFMYPSNI

XP_022156899.1 60S ribosomal protein L35a-1 [Momordica charantia]1.3e-5494.64Show/hide
Query:  MVKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMG
        MVKG +GERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSK+EVSWYQGKRLAYIYKAKVKKNG+HYRCIWGKV RPHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMG

Query:  DKVRVFMYPSNI
        D+VRVFMYPSNI
Subjt:  DKVRVFMYPSNI

XP_022957040.1 60S ribosomal protein L35a-1 [Cucurbita moschata]2.6e-5596.43Show/hide
Query:  MVKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMG
        MVKGSQGERVRLY RGTILGYKRSKSNQYPNTSLLQIEGVNSK+EVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKV RPHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMG

Query:  DKVRVFMYPSNI
        D+VRVFMYPSNI
Subjt:  DKVRVFMYPSNI

XP_038891868.1 60S ribosomal protein L35a-1 [Benincasa hispida]5.7e-5595.54Show/hide
Query:  MVKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMG
        MVKG QGERVRLY RGTILGYKRSKSNQYPNTSLLQIEGVNSK+EVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKV RPHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMG

Query:  DKVRVFMYPSNI
        D+VRVFMYPSNI
Subjt:  DKVRVFMYPSNI

TrEMBL top hitse value%identityAlignment
A0A0A0KM11 Uncharacterized protein4.7e-5595.54Show/hide
Query:  MVKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMG
        MVKG QGERVRLY RGTILGYKRSKSNQYPNTSLLQIEGVNSK+EVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKV RPHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMG

Query:  DKVRVFMYPSNI
        D+VRVFMYPSNI
Subjt:  DKVRVFMYPSNI

A0A1S3CIN8 60S ribosomal protein L35a-14.7e-5595.54Show/hide
Query:  MVKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMG
        MVKG QGERVRLY RGTILGYKRSKSNQYPNTSLLQIEGVNSK+EVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKV RPHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMG

Query:  DKVRVFMYPSNI
        D+VRVFMYPSNI
Subjt:  DKVRVFMYPSNI

A0A5A7T1I6 Ribosomal protein L35A4.7e-5595.54Show/hide
Query:  MVKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMG
        MVKG QGERVRLY RGTILGYKRSKSNQYPNTSLLQIEGVNSK+EVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKV RPHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMG

Query:  DKVRVFMYPSNI
        D+VRVFMYPSNI
Subjt:  DKVRVFMYPSNI

A0A6J1GZF1 60S ribosomal protein L35a-11.2e-5596.43Show/hide
Query:  MVKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMG
        MVKGSQGERVRLY RGTILGYKRSKSNQYPNTSLLQIEGVNSK+EVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKV RPHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMG

Query:  DKVRVFMYPSNI
        D+VRVFMYPSNI
Subjt:  DKVRVFMYPSNI

A0A6J1IM24 60S ribosomal protein L35a-1-like1.2e-5596.43Show/hide
Query:  MVKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMG
        MVKGSQGERVRLY RGTILGYKRSKSNQYPNTSLLQIEGVNSK+EVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKV RPHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMG

Query:  DKVRVFMYPSNI
        D+VRVFMYPSNI
Subjt:  DKVRVFMYPSNI

SwissProt top hitse value%identityAlignment
P41056 60S ribosomal protein L33-B1.4e-2754.29Show/hide
Query:  ERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMGDKVRVFM
        E  RLY++G  L Y+RSK    PN SL++IEGV + +E  +Y GKR+AY+Y+A  +  GS  R +WGKV R HGNSG+VRA F++NLP K+ G  VR+F+
Subjt:  ERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMGDKVRVFM

Query:  YPSNI
        YPSNI
Subjt:  YPSNI

P51422 60S ribosomal protein L35a-44.3e-5385.59Show/hide
Query:  VKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMGD
        +KG QGERVRLY+RGT+LGYKRSKSNQYPNTSL+QIEGVN++EEV+WY+GKRLAYIYKAK KKNGSHYRCIWGKV RPHGNSG+VR+KF SNLPPKSMG 
Subjt:  VKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMGD

Query:  KVRVFMYPSNI
        +VRVFMYPSNI
Subjt:  KVRVFMYPSNI

Q9C912 60S ribosomal protein L35a-31.7e-5487.5Show/hide
Query:  MVKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMG
        MVKG QGERVRLY+RGTILGYKRSKSNQYPNTSL+QIEGVN++EEV+WY+GKR+AYIYKAK KKNGSHYRCIWGKV RPHGNSG+VRAKF SNLPPKSMG
Subjt:  MVKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMG

Query:  DKVRVFMYPSNI
         +VRVFMYPSNI
Subjt:  DKVRVFMYPSNI

Q9FZH0 60S ribosomal protein L35a-23.3e-5385.59Show/hide
Query:  VKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMGD
        +KG QGERVRLY+RGT+LGYKRSKSNQYPNTSL+QIEGVN++EEV+WY+GKRLAYIYKAK KKNGSHYRCIWGKV RPHGNSG+VR+KF SNLPPKSMG 
Subjt:  VKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMGD

Query:  KVRVFMYPSNI
        +VRVFMYPSNI
Subjt:  KVRVFMYPSNI

Q9LMK0 60S ribosomal protein L35a-11.7e-5487.5Show/hide
Query:  MVKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMG
        MVKG QGERVRLY+RGTILGYKRSKSNQYPNTSL+Q+EGVN+ EEVSWY+GKR+AYIYKAK KKNGSHYRCIWGKV RPHGNSG+VRAKF SNLPPKSMG
Subjt:  MVKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMG

Query:  DKVRVFMYPSNI
         +VRVFMYPSNI
Subjt:  DKVRVFMYPSNI

Arabidopsis top hitse value%identityAlignment
AT1G07070.1 Ribosomal protein L35Ae family protein1.2e-5587.5Show/hide
Query:  MVKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMG
        MVKG QGERVRLY+RGTILGYKRSKSNQYPNTSL+Q+EGVN+ EEVSWY+GKR+AYIYKAK KKNGSHYRCIWGKV RPHGNSG+VRAKF SNLPPKSMG
Subjt:  MVKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMG

Query:  DKVRVFMYPSNI
         +VRVFMYPSNI
Subjt:  DKVRVFMYPSNI

AT1G41880.1 Ribosomal protein L35Ae family protein2.3e-5485.59Show/hide
Query:  VKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMGD
        +KG QGERVRLY+RGT+LGYKRSKSNQYPNTSL+QIEGVN++EEV+WY+GKRLAYIYKAK KKNGSHYRCIWGKV RPHGNSG+VR+KF SNLPPKSMG 
Subjt:  VKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMGD

Query:  KVRVFMYPSNI
        +VRVFMYPSNI
Subjt:  KVRVFMYPSNI

AT1G74270.1 Ribosomal protein L35Ae family protein1.2e-5587.5Show/hide
Query:  MVKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMG
        MVKG QGERVRLY+RGTILGYKRSKSNQYPNTSL+QIEGVN++EEV+WY+GKR+AYIYKAK KKNGSHYRCIWGKV RPHGNSG+VRAKF SNLPPKSMG
Subjt:  MVKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMG

Query:  DKVRVFMYPSNI
         +VRVFMYPSNI
Subjt:  DKVRVFMYPSNI

AT3G55750.1 Ribosomal protein L35Ae family protein3.0e-5485.59Show/hide
Query:  VKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMGD
        +KG QGERVRLY+RGT+LGYKRSKSNQYPNTSL+QIEGVN++EEV+WY+GKRLAYIYKAK KKNGSHYRCIWGKV RPHGNSG+VR+KF SNLPPKSMG 
Subjt:  VKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMGD

Query:  KVRVFMYPSNI
        +VRVFMYPSNI
Subjt:  KVRVFMYPSNI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAAGGCAGCCAAGGAGAAAGAGTCAGACTCTACATCAGGGGAACAATTCTCGGCTACAAGAGGTCGAAGTCGAACCAGTATCCAAACACCTCTTTACTCCAAAT
TGAGGGTGTTAATTCCAAGGAAGAGGTTTCGTGGTACCAAGGAAAGCGATTGGCGTATATCTACAAGGCTAAGGTGAAGAAGAATGGAAGCCACTACCGTTGCATTTGGG
GCAAAGTCAATAGGCCTCATGGGAACAGTGGTATCGTTAGAGCTAAGTTCAAGTCTAACCTGCCACCAAAGTCCATGGGTGACAAAGTCAGAGTTTTCATGTATCCCAGC
AACATTTGA
mRNA sequenceShow/hide mRNA sequence
GTTCGTCATTTCGTCGGCCGTCGAAACTTTGTAGCAGAAGGAAGATCCAGACGCCGAAAATGGTGAAAGGCAGCCAAGGAGAAAGAGTCAGACTCTACATCAGGGGAACA
ATTCTCGGCTACAAGAGGTCGAAGTCGAACCAGTATCCAAACACCTCTTTACTCCAAATTGAGGGTGTTAATTCCAAGGAAGAGGTTTCGTGGTACCAAGGAAAGCGATT
GGCGTATATCTACAAGGCTAAGGTGAAGAAGAATGGAAGCCACTACCGTTGCATTTGGGGCAAAGTCAATAGGCCTCATGGGAACAGTGGTATCGTTAGAGCTAAGTTCA
AGTCTAACCTGCCACCAAAGTCCATGGGTGACAAAGTCAGAGTTTTCATGTATCCCAGCAACATTTGAGCAATGAAGAACGTGGATGAAACGAGTGGTTGTTACATGAAG
GGATTTATATTTTATTTTGTGAGCTAAGATGAAGCATTTTCTGTTTCTGAACCGAGTCATTTTTGCTGTTTAGGTAATGTTTCACCTTGAAGTAGTAGTTGAACAGAATT
TTTAAACCATTTTTATGAGCATTCTTGTGTTATGCGATTTATTTGCCACTCGAGTGGTTTACAAAGTTAGTCCTCAAGAGATGATTTGGTGGTCAAAGTTTGGACTTTGA
ATGTGTGCTCCTCCTAAGGTCTTAGGTTCGAAACTCACTTTTGTGTGATATTTCTTGGTCCCTGGTTTAGATATAGGCGTGGTTACTTTGATCATAGTGGAGTGAACATT
TGATATCCCGGTTTCTAAAACAAAGGGTGGTTTACAAAGTCTTTGCACTTGCATATCAAATTAACTTTCTGCCAAACGTTAGTTTAGATGAGTTATAAATCCAAATTTAA
GAGTTTGAGAGGATTGAGTTTTAGTCATAATGAGCACATGTATAGAATTTAATTTAGTAATATTGTAGAGG
Protein sequenceShow/hide protein sequence
MVKGSQGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKEEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVNRPHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPS
NI