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Sed0009130 (gene) of Chayote v1 genome

Gene IDSed0009130
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG12:33845620..33846237
RNA-Seq ExpressionSed0009130
SyntenySed0009130
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5945963.1 hypothetical protein HYC85_016191 [Camellia sinensis]4.4e-0734.95Show/hide
Query:  VDSEIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLAAALTKVSFSWCARDANGLAHHLARMAAEEVLNANWMEDVP
        VDS+  EA A  + V +  DLGF ++ +E D+ R+   L++     +E G I+ +T+    + ++   S   R  NGLAH LARMA  +     WM D+P
Subjt:  VDSEIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLAAALTKVSFSWCARDANGLAHHLARMAAEEVLNANWMEDVP

Query:  ENL
         +L
Subjt:  ENL

KAG2565207.1 hypothetical protein PVAP13_7NG002334 [Panicum virgatum]6.9e-0828.81Show/hide
Query:  SFVSRIVDSEIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLAAALTKVSFSWCARDANGLAHHLARMAAEEVLNAN
        S++S ++D+ + EA A+++G+ +   +G   V+++ D   V   + +  +S T +  I DE   L      +S S C R++N +AH LAR A  E  +  
Subjt:  SFVSRIVDSEIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLAAALTKVSFSWCARDANGLAHHLARMAAEEVLNAN

Query:  WMEDVPENLREDYIIEMT
        W++D P ++R+  +  +T
Subjt:  WMEDVPENLREDYIIEMT

XP_021744937.1 uncharacterized protein LOC110710901 [Chenopodium quinoa]4.0e-0837Show/hide
Query:  EIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLAAALTKVSFSWCARDANGLAHHLARMAAEEVLNANWMEDVPENL
        ++VEALA++  +++ ++ GFR V +ETD  ++ + L KC    T  G I+ + L LA A   VSFS+  R  N +AH LA++         WMED P ++
Subjt:  EIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLAAALTKVSFSWCARDANGLAHHLARMAAEEVLNANWMEDVPENL

XP_021747929.1 uncharacterized protein LOC110713793 [Chenopodium quinoa]5.2e-0832.17Show/hide
Query:  DSEIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLAAALTKVSFSWCARDANGLAHHLARMAAEEVLNANWMEDVPE
        D++I EA+A++  +S+V++ GFR V +ETD  ++ S L K     T  G II++ + LA +     FS+  R+ N ++H LA++ +  V    W+E+VP 
Subjt:  DSEIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLAAALTKVSFSWCARDANGLAHHLARMAAEEVLNANWMEDVPE

Query:  NLREDYIIEMTNSLV
        ++ E  + +  + L+
Subjt:  NLREDYIIEMTNSLV

XP_023892531.1 uncharacterized protein LOC112004513 [Quercus suber]1.2e-0738.61Show/hide
Query:  SEIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLAAALTKVSFSWCARDANGLAHHLARMAAEEVLNANWMEDVPEN
        +EI+EALA +  VS  ++LGF +   E D+  +   L   +FS   VG II +  S++  L   SFS+  R  N +AH LA+ A        WMEDVP N
Subjt:  SEIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLAAALTKVSFSWCARDANGLAHHLARMAAEEVLNANWMEDVPEN

Query:  L
        +
Subjt:  L

TrEMBL top hitse value%identityAlignment
A0A2N9EK22 Uncharacterized protein1.9e-0838.1Show/hide
Query:  EIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLAAALTKVSFSWCARDANGLAHHLARMAAEEVLNANWMEDVPENL
        E +EA A +  V  V ++G +E E E D+  + + L       T  G +I +  SLA AL    F+   R  NGLAH LARMA    +   WMEDVP  L
Subjt:  EIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLAAALTKVSFSWCARDANGLAHHLARMAAEEVLNANWMEDVPENL

Query:  REDYI
        ++ Y+
Subjt:  REDYI

A0A2N9EQW7 Reverse transcriptase domain-containing protein9.7e-0838.24Show/hide
Query:  EIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLAAALTKVSFSWCARDANGLAHHLARMAAEEVLNANWMEDVPENL
        E +EA A +  V  V ++G +E E E D+  + + L       T  G +I +  SLA AL    F+   R  NGLAH LARMA    +   WMEDVP  L
Subjt:  EIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLAAALTKVSFSWCARDANGLAHHLARMAAEEVLNANWMEDVPENL

Query:  RE
        ++
Subjt:  RE

A0A2N9GYK3 Uncharacterized protein2.5e-0838.1Show/hide
Query:  EIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLAAALTKVSFSWCARDANGLAHHLARMAAEEVLNANWMEDVPENL
        E +EA A +  V  V ++G +E E E D+  + + L       T  G +I +  SLA AL    F+   R  NGLAH LARMA    +   WMEDVP  L
Subjt:  EIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLAAALTKVSFSWCARDANGLAHHLARMAAEEVLNANWMEDVPENL

Query:  REDYI
        ++ Y+
Subjt:  REDYI

A0A803KQ76 Uncharacterized protein6.7e-0933.93Show/hide
Query:  FVSRIVDSEIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLAAALTKVSFSWCARDANGLAHHLARMAAEEVLNANW
        F + ++++++ EALA +  +S+ +D GF  V +ET+  ++ S L K     TE+G I+ + L LA      SFS+  R  N +AH LA++ +       W
Subjt:  FVSRIVDSEIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLAAALTKVSFSWCARDANGLAHHLARMAAEEVLNANW

Query:  MEDVPENLREDY
        ME+VP  + E Y
Subjt:  MEDVPENLREDY

A0A803MB59 Uncharacterized protein2.5e-0831.86Show/hide
Query:  DSEIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLAAALTKVSFSWCARDANGLAHHLARMAAEEVLNANWMEDVPE
        D ++ EALA++  +++ +DLGFR+V +ETD  ++ S L K     T +G ++++ + LA      SFS+  R  N +AH LA++++  V     ME+VP 
Subjt:  DSEIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLAAALTKVSFSWCARDANGLAHHLARMAAEEVLNANWMEDVPE

Query:  NLREDYIIEMTNS
         +    + ++ +S
Subjt:  NLREDYIIEMTNS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCATTTGGCTTACAAGGAGCAGCCACTTCTTATGATTGGGAGTTTTGTGAGCAGAATTGTGGATTCAGAAATTGTCGAAGCTTTAGCGGTTCAAGAGGGAGTATC
AATGGTTGTGGATTTGGGTTTCAGGGAGGTTGAAGTGGAAACAGATGCATCTCGTGTTCCTTCTTTTCTTCAAAAATGCGAGTTTAGTAGAACTGAAGTGGGTTTTATCA
TAGACGAGACTTTGTCCTTAGCTGCAGCATTAACGAAGGTATCCTTTTCATGGTGTGCAAGAGATGCCAACGGTCTTGCTCATCACCTAGCTCGTATGGCAGCAGAAGAA
GTTTTGAATGCTAATTGGATGGAAGATGTTCCAGAGAATCTCAGAGAAGATTACATAATTGAAATGACGAATTCTCTTGTCCAAGAAAGGGAAGAGAGTCTCCTACCTTA
A
mRNA sequenceShow/hide mRNA sequence
ATGAGGCATTTGGCTTACAAGGAGCAGCCACTTCTTATGATTGGGAGTTTTGTGAGCAGAATTGTGGATTCAGAAATTGTCGAAGCTTTAGCGGTTCAAGAGGGAGTATC
AATGGTTGTGGATTTGGGTTTCAGGGAGGTTGAAGTGGAAACAGATGCATCTCGTGTTCCTTCTTTTCTTCAAAAATGCGAGTTTAGTAGAACTGAAGTGGGTTTTATCA
TAGACGAGACTTTGTCCTTAGCTGCAGCATTAACGAAGGTATCCTTTTCATGGTGTGCAAGAGATGCCAACGGTCTTGCTCATCACCTAGCTCGTATGGCAGCAGAAGAA
GTTTTGAATGCTAATTGGATGGAAGATGTTCCAGAGAATCTCAGAGAAGATTACATAATTGAAATGACGAATTCTCTTGTCCAAGAAAGGGAAGAGAGTCTCCTACCTTA
A
Protein sequenceShow/hide protein sequence
MRHLAYKEQPLLMIGSFVSRIVDSEIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLAAALTKVSFSWCARDANGLAHHLARMAAEE
VLNANWMEDVPENLREDYIIEMTNSLVQEREESLLP