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Sed0009134 (gene) of Chayote v1 genome

Gene IDSed0009134
OrganismSechium edule (Chayote v1)
DescriptionSWIB domain-containing protein
Genome locationLG13:5139816..5145826
RNA-Seq ExpressionSed0009134
SyntenySed0009134
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE9606954.1 putative transcription regulator SWI/SNF-BAF60b family [Lupinus albus]8.9e-1654.32Show/hide
Query:  KLKPQLCKFLGVPLVSPRGEIPVLISKFLKLYHPQSPGIKKDKIWEENLKAILHGKEGVGMSEINKILSPQFNDPSLRNKE
        K   +LCKF+G+P  S R EI ++ISKFLKLY+ +SPGIKKDKIWE+NL+ +L GK  +G  E+ KILSP+F+  ++  K+
Subjt:  KLKPQLCKFLGVPLVSPRGEIPVLISKFLKLYHPQSPGIKKDKIWEENLKAILHGKEGVGMSEINKILSPQFNDPSLRNKE

KAG6577105.1 hypothetical protein SDJN03_24679, partial [Cucurbita argyrosperma subsp. sororia]2.8e-1764.79Show/hide
Query:  PLKISVGARLLSC-KVKLKPQLCKFLGVPLVSPRGEIPVLISKFLKLYHPQSPGIKKDKIWEENLKAILHG
        P+ I++   L++  K++LKPQLCKFLG+PLV+PRG+IP+LI+KFLK Y  QSPGI KD  WEENLKA LHG
Subjt:  PLKISVGARLLSC-KVKLKPQLCKFLGVPLVSPRGEIPVLISKFLKLYHPQSPGIKKDKIWEENLKAILHG

KAG7015106.1 hypothetical protein SDJN02_22739 [Cucurbita argyrosperma subsp. argyrosperma]5.8e-2376.39Show/hide
Query:  MAPLKISVGARLLSCKVKLKPQLCKFLGVPLVSPRGEIPVLISKFLKLYHPQSPGIKKDKIWEENLKAILHG
        MAP KISVGARLLS K++LKPQLCKFLG+PL++PRG+IP+LI+KFLK Y  QSPGI KD  WEENLKA LHG
Subjt:  MAPLKISVGARLLSCKVKLKPQLCKFLGVPLVSPRGEIPVLISKFLKLYHPQSPGIKKDKIWEENLKAILHG

XP_019421169.1 PREDICTED: uncharacterized protein LOC109331245 [Lupinus angustifolius]4.0e-1655.56Show/hide
Query:  KLKPQLCKFLGVPLVSPRGEIPVLISKFLKLYHPQSPGIKKDKIWEENLKAILHGKEGVGMSEINKILSPQFNDPSLRNKE
        K   +LCKF+G+P  S R EI ++ISKFLKLY+ +SPGIKKDKIWE+NL+ +L GK  +G  E+ KILSP+F+  ++  KE
Subjt:  KLKPQLCKFLGVPLVSPRGEIPVLISKFLKLYHPQSPGIKKDKIWEENLKAILHGKEGVGMSEINKILSPQFNDPSLRNKE

XP_022136393.1 uncharacterized protein LOC111008113 [Momordica charantia]8.9e-4079.05Show/hide
Query:  MAPLKISVGARLLSCKVKLKPQLCKFLGVPLVSPRGEIPVLISKFLKLYHPQSPGIKKDKIWEENLKAILHGKEGVGMSEINKILSPQFNDPSLRNKEME
        MAP KI+V A +LS K++ KPQLCKFLG+PLVSPRG+IP+LISKFLKLY PQSPG++KD+IWEENLKAIL GK+GVGM E+NKILSPQFND SLRN EME
Subjt:  MAPLKISVGARLLSCKVKLKPQLCKFLGVPLVSPRGEIPVLISKFLKLYHPQSPGIKKDKIWEENLKAILHGKEGVGMSEINKILSPQFNDPSLRNKEME

Query:  RQKDI
        RQKDI
Subjt:  RQKDI

TrEMBL top hitse value%identityAlignment
A0A4P1QT43 SWIB domain-containing protein1.9e-1655.56Show/hide
Query:  KLKPQLCKFLGVPLVSPRGEIPVLISKFLKLYHPQSPGIKKDKIWEENLKAILHGKEGVGMSEINKILSPQFNDPSLRNKE
        K   +LCKF+G+P  S R EI ++ISKFLKLY+ +SPGIKKDKIWE+NL+ +L GK  +G  E+ KILSP+F+  ++  KE
Subjt:  KLKPQLCKFLGVPLVSPRGEIPVLISKFLKLYHPQSPGIKKDKIWEENLKAILHGKEGVGMSEINKILSPQFNDPSLRNKE

A0A4P1RHA4 SWIB domain-containing protein4.3e-1654.32Show/hide
Query:  KLKPQLCKFLGVPLVSPRGEIPVLISKFLKLYHPQSPGIKKDKIWEENLKAILHGKEGVGMSEINKILSPQFNDPSLRNKE
        K   +LCKF+G+P  S R EI ++ISKFLKLY+ +SPGIKKDKIWE+NL+ +L GK  +G  E+ KILSP+F+  ++  K+
Subjt:  KLKPQLCKFLGVPLVSPRGEIPVLISKFLKLYHPQSPGIKKDKIWEENLKAILHGKEGVGMSEINKILSPQFNDPSLRNKE

A0A6A4Q0B8 Putative transcription regulator SWI/SNF-BAF60b family4.3e-1654.32Show/hide
Query:  KLKPQLCKFLGVPLVSPRGEIPVLISKFLKLYHPQSPGIKKDKIWEENLKAILHGKEGVGMSEINKILSPQFNDPSLRNKE
        K   +LCKF+G+P  S R EI ++ISKFLKLY+ +SPGIKKDKIWE+NL+ +L GK  +G  E+ KILSP+F+  ++  K+
Subjt:  KLKPQLCKFLGVPLVSPRGEIPVLISKFLKLYHPQSPGIKKDKIWEENLKAILHGKEGVGMSEINKILSPQFNDPSLRNKE

A0A6A5MEA5 Putative transcription regulator SWI/SNF-BAF60b family4.3e-1654.32Show/hide
Query:  KLKPQLCKFLGVPLVSPRGEIPVLISKFLKLYHPQSPGIKKDKIWEENLKAILHGKEGVGMSEINKILSPQFNDPSLRNKE
        K   +LCKF+G+P  S R EI ++ISKFLKLY+ +SPGIKKDKIWE+NL+ +L GK  +G  E+ KILSP+F+  ++  K+
Subjt:  KLKPQLCKFLGVPLVSPRGEIPVLISKFLKLYHPQSPGIKKDKIWEENLKAILHGKEGVGMSEINKILSPQFNDPSLRNKE

A0A6J1C7G5 uncharacterized protein LOC1110081134.3e-4079.05Show/hide
Query:  MAPLKISVGARLLSCKVKLKPQLCKFLGVPLVSPRGEIPVLISKFLKLYHPQSPGIKKDKIWEENLKAILHGKEGVGMSEINKILSPQFNDPSLRNKEME
        MAP KI+V A +LS K++ KPQLCKFLG+PLVSPRG+IP+LISKFLKLY PQSPG++KD+IWEENLKAIL GK+GVGM E+NKILSPQFND SLRN EME
Subjt:  MAPLKISVGARLLSCKVKLKPQLCKFLGVPLVSPRGEIPVLISKFLKLYHPQSPGIKKDKIWEENLKAILHGKEGVGMSEINKILSPQFNDPSLRNKEME

Query:  RQKDI
        RQKDI
Subjt:  RQKDI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein8.9e-0638.24Show/hide
Query:  QLCKFLGVPLVSPRGEIPVLISKFLKLYHPQSPGIKKDKIWEENLKAILHGKEGVGMSEINKILSPQF
        QL  F G   ++ RG     + +++KL++ Q+P  KK+   ++ LK I  GK+ VG++EI K+LSP F
Subjt:  QLCKFLGVPLVSPRGEIPVLISKFLKLYHPQSPGIKKDKIWEENLKAILHGKEGVGMSEINKILSPQF

AT2G35605.1 SWIB/MDM2 domain superfamily protein2.2e-0436.99Show/hide
Query:  VKLKPQLCKFLGVPLVSPRGEIPVLISKFLKLYHPQSPGIKKDKIWEENLKAILHGKEGVGMSEINKILSPQF
        V +   L  F+G   VS R      I +++KL + Q+P  K++ + +E LK I  GK+ VG  EI+K+LS  F
Subjt:  VKLKPQLCKFLGVPLVSPRGEIPVLISKFLKLYHPQSPGIKKDKIWEENLKAILHGKEGVGMSEINKILSPQF

AT3G03590.1 SWIB/MDM2 domain superfamily protein2.6e-0538.03Show/hide
Query:  LKPQLCKFLGVPLVSPRGEIPVLISKFLKLYHPQSPGIKKDKIWEENLKAILHGKEGVGMSEINKILSPQF
        + P L +FLG    S R +    I  ++K +  Q+P  K++   +E LK I  GK+ VG  EI+K+LSP F
Subjt:  LKPQLCKFLGVPLVSPRGEIPVLISKFLKLYHPQSPGIKKDKIWEENLKAILHGKEGVGMSEINKILSPQF

AT4G34290.1 SWIB/MDM2 domain superfamily protein5.8e-0539.68Show/hide
Query:  LGVPLVSPRGEIPVLISKFLKLYHPQSPGIKKDKIWEENLKAILHGKEGVGMSEINKILSPQF
        +GVP + PR +    I  ++K +  Q P  K+D + +E LK I  GKE VG  EI K++ P F
Subjt:  LGVPLVSPRGEIPVLISKFLKLYHPQSPGIKKDKIWEENLKAILHGKEGVGMSEINKILSPQF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCGCTCAAGATCAGTGTCGGCGCTCGTCTTCTTAGCTGCAAAGTTAAACTCAAACCTCAACTCTGCAAGTTCCTCGGCGTTCCTCTCGTTTCTCCTCGCGGAGA
AATTCCGGTCCTAATTTCCAAGTTCCTCAAGCTCTATCATCCTCAGAGCCCGGGTATAAAAAAGGACAAGATCTGGGAGGAGAACTTAAAAGCCATATTACATGGTAAAG
AAGGAGTTGGGATGTCAGAGATTAACAAAATTCTCTCTCCCCAATTCAATGATCCAAGTCTAAGAAATAAGGAAATGGAACGTCAAAAAGATATCAGCAGACGTAGTCAA
AGTGGATAG
mRNA sequenceShow/hide mRNA sequence
CAGGGCTCGGCCCAATAACCAGCAGGCTAAAGTAGAGACTTGCAGAGTAAGCCACGGCCGCCACCGCCGGCGAAGAAAGAGAAATGTTCTAAGAACGAGATTGAGAACCG
GGAGATTTCAAGGTCCGATCAAAGGCGGTGACAAATTCGAGATCTCAAGAATCCATGGCTCCGCTCAAGATCAGTGTCGGCGCTCGTCTTCTTAGCTGCAAAGTTAAACT
CAAACCTCAACTCTGCAAGTTCCTCGGCGTTCCTCTCGTTTCTCCTCGCGGAGAAATTCCGGTCCTAATTTCCAAGTTCCTCAAGCTCTATCATCCTCAGAGCCCGGGTA
TAAAAAAGGACAAGATCTGGGAGGAGAACTTAAAAGCCATATTACATGGTAAAGAAGGAGTTGGGATGTCAGAGATTAACAAAATTCTCTCTCCCCAATTCAATGATCCA
AGTCTAAGAAATAAGGAAATGGAACGTCAAAAAGATATCAGCAGACGTAGTCAAAGTGGATAGGCTCTTACCATTTTGGGTTGTGCTTTCTGAGTTGACGAATGAAGCGA
CAAGCTGCTCGTTGTGGCATTTCCGGCTAGTATTGCTCGTCTTTCTAATCCTCACCGTGACCAAGTTAGAATAGCTGCGAAGACCGATCCCGTCACCAACACCAACTCCA
CCAAAGCTAGCTGCCCACAAATTTACTTGAGAAAAATTTAATTTATATCTAATTTCCTTCCATTTTAAAATTTCCCTTTCCTGGAAAAGCCGATGGAGTAATTTGGAGAA
ATTTTTACGTATGGGAATATCAGTGTGTGATTGCTTGCTGCATCCCCATATGTTGTTTTGTTCAATAAAAAAAAATGAAGTAGAG
Protein sequenceShow/hide protein sequence
MAPLKISVGARLLSCKVKLKPQLCKFLGVPLVSPRGEIPVLISKFLKLYHPQSPGIKKDKIWEENLKAILHGKEGVGMSEINKILSPQFNDPSLRNKEMERQKDISRRSQ
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