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Sed0009227 (gene) of Chayote v1 genome

Gene IDSed0009227
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG13:1086343..1086858
RNA-Seq ExpressionSed0009227
SyntenySed0009227
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7802400.1 uncharacterized protein G2W53_041511 [Senna tora]1.1e-1235.21Show/hide
Query:  MNTDAVIRVEMGSSRVGMVIRNERGEAMISMAKPVFGVTDVQLVEALVVQEGLLMAQAMGFQHVEVELDSTSTVNLVQQKTKCITELGKIVKEIWKIASR
        +N DA +R + G +RVG +IR+  G  + +M K + G   V++ EAL V EG+++A+ M   +V VE DS S + L+  +    T +  I+K+I ++ S 
Subjt:  MNTDAVIRVEMGSSRVGMVIRNERGEAMISMAKPVFGVTDVQLVEALVVQEGLLMAQAMGFQHVEVELDSTSTVNLVQQKTKCITELGKIVKEIWKIASR

Query:  LTFVSFHWCGQKMNKLAHALAE--LTIPMDEEAI--WVEEVP
            SF+W  ++ NK+AH LA   +  P D   I  W+E+ P
Subjt:  LTFVSFHWCGQKMNKLAHALAE--LTIPMDEEAI--WVEEVP

KAF7819670.1 uncharacterized protein G2W53_025125 [Senna tora]8.9e-1537.93Show/hide
Query:  MNTDAVIRVEMGSSRVGMVIRNERGEAMISMAKPVFGVTDVQLVEALVVQEGLLMAQAMGFQHVEVELDSTSTVNLVQQKTKCITELGKIVKEIWKIASR
        +N DA +R  M  SRVG +IRN  G  +++M K     T V  +EAL V EGL++A++M   ++EVE DS     L+ +K    + LG I+++I +++S 
Subjt:  MNTDAVIRVEMGSSRVGMVIRNERGEAMISMAKPVFGVTDVQLVEALVVQEGLLMAQAMGFQHVEVELDSTSTVNLVQQKTKCITELGKIVKEIWKIASR

Query:  LTFVSFHWCGQKMNKLAHALAELTIP-MDEE---AIWVEEVPIAV
          FVSF W  ++ NKLAH LA   +  MD+     +W+E+ P+ +
Subjt:  LTFVSFHWCGQKMNKLAHALAELTIP-MDEE---AIWVEEVPIAV

MBA0753251.1 hypothetical protein [Gossypium gossypioides]1.1e-1232.89Show/hide
Query:  MNTDAVIRVEMGSSRVGMVIRNERGEAMISMAKPVFGVTDVQLVEALVVQEGLLMAQAMGFQHVEVELDSTSTVNLVQQKTKCITELGKIVKEIWKIASR
        +N DAV +  +  S +G VI+N+ G  + S  +    V      EAL   + L  A  MGFQH+E+E DS +T+   Q+      E+G  ++EI ++A++
Subjt:  MNTDAVIRVEMGSSRVGMVIRNERGEAMISMAKPVFGVTDVQLVEALVVQEGLLMAQAMGFQHVEVELDSTSTVNLVQQKTKCITELGKIVKEIWKIASR

Query:  LTFVSFHWCGQKMNKLAHALAELTIPMDEEAIWVEEVPIAVGELYNREK
          F+ F +   + N +AH +A+   P+ E   WVEEVP +  ++ NR++
Subjt:  LTFVSFHWCGQKMNKLAHALAELTIPMDEEAIWVEEVPIAVGELYNREK

MBA0878499.1 hypothetical protein [Gossypium schwendimanii]8.3e-1333.56Show/hide
Query:  MNTDAVIRVEMGSSRVGMVIRNERGEAMISMAKPVFGVTDVQLVEALVVQEGLLMAQAMGFQHVEVELDSTSTVNLVQQKTKCITELGKIVKEIWKIASR
        +N DAV +  +  S +G VI+N+ G  + S  +    V      EAL   + L  A  MGFQH+E+E DS +T+   Q+      E+G  ++EI ++A++
Subjt:  MNTDAVIRVEMGSSRVGMVIRNERGEAMISMAKPVFGVTDVQLVEALVVQEGLLMAQAMGFQHVEVELDSTSTVNLVQQKTKCITELGKIVKEIWKIASR

Query:  LTFVSFHWCGQKMNKLAHALAELTIPMDEEAIWVEEVPIAVGELYNREK
          F+ F +   + N +AH +A+   P+ E   WVEEVP +  E+ NR++
Subjt:  LTFVSFHWCGQKMNKLAHALAELTIPMDEEAIWVEEVPIAVGELYNREK

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]5.4e-1231.79Show/hide
Query:  MNTDAVIRVEMGSSRVGMVIRNERGEAMISMAKPVFGVTDVQLVEALVVQEGLLMAQAMGFQHVEVELDSTSTVNLVQQKTKCITELGKIVKEIWKIASR
        +NTDA        + +G++IRN+RG+ M S  K +  +  V + EA+V  EGL +A  +G   V +E DS+   NL  Q ++ ++E G+IV +     ++
Subjt:  MNTDAVIRVEMGSSRVGMVIRNERGEAMISMAKPVFGVTDVQLVEALVVQEGLLMAQAMGFQHVEVELDSTSTVNLVQQKTKCITELGKIVKEIWKIASR

Query:  LTFVSFHWCGQKMNKLAHALAELTIPMDEEAIWVEEVPIAVGELYNREKIE
            SF++  ++ NK AH LA   + + E +IW+E+ P+ +      E +E
Subjt:  LTFVSFHWCGQKMNKLAHALAELTIPMDEEAIWVEEVPIAVGELYNREKIE

TrEMBL top hitse value%identityAlignment
A0A6J1CIF1 uncharacterized protein LOC1110112372.6e-1231.79Show/hide
Query:  MNTDAVIRVEMGSSRVGMVIRNERGEAMISMAKPVFGVTDVQLVEALVVQEGLLMAQAMGFQHVEVELDSTSTVNLVQQKTKCITELGKIVKEIWKIASR
        +NTDA        + +G++IRN+RG+ M S  K +  +  V + EA+V  EGL +A  +G   V +E DS+   NL  Q ++ ++E G+IV +     ++
Subjt:  MNTDAVIRVEMGSSRVGMVIRNERGEAMISMAKPVFGVTDVQLVEALVVQEGLLMAQAMGFQHVEVELDSTSTVNLVQQKTKCITELGKIVKEIWKIASR

Query:  LTFVSFHWCGQKMNKLAHALAELTIPMDEEAIWVEEVPIAVGELYNREKIE
            SF++  ++ NK AH LA   + + E +IW+E+ P+ +      E +E
Subjt:  LTFVSFHWCGQKMNKLAHALAELTIPMDEEAIWVEEVPIAVGELYNREKIE

A0A7J8WZ51 RNase H domain-containing protein9.9e-1231.54Show/hide
Query:  MNTDAVIRVEMGSSRVGMVIRNERGEAMISMAKPVFGVTDVQLVEALVVQEGLLMAQAMGFQHVEVELDSTSTVNLVQQKTKCITELGKIVKEIWKIASR
        +N DA  + ++  S  G +IRNE+GE M S       + DV L EA+   +GLL A+ MGF +VEVE D+   +  + Q      +L  ++ +I    S 
Subjt:  MNTDAVIRVEMGSSRVGMVIRNERGEAMISMAKPVFGVTDVQLVEALVVQEGLLMAQAMGFQHVEVELDSTSTVNLVQQKTKCITELGKIVKEIWKIASR

Query:  LTFVSFHWCGQKMNKLAHALAELTIPMDEEAIWVEEVPIAVGELYNREK
           +SF    ++ N++AH +A+      E   W+E++P    EL   E+
Subjt:  LTFVSFHWCGQKMNKLAHALAELTIPMDEEAIWVEEVPIAVGELYNREK

A0A7J9CV50 Uncharacterized protein1.7e-1133.11Show/hide
Query:  MNTDAVIRVEMGSSRVGMVIRNERGEAMISMAKPVFGVTDVQLVEALVVQEGLLMAQAMGFQHVEVELDSTSTVNLVQQKTKCITELGKIVKEIWKIASR
        +N DA  +  +  S  G VIRN RG  M S       V+D    EA+   + L +++ MGF HV++E DS +T+  + Q     +++G  + EI   AS 
Subjt:  MNTDAVIRVEMGSSRVGMVIRNERGEAMISMAKPVFGVTDVQLVEALVVQEGLLMAQAMGFQHVEVELDSTSTVNLVQQKTKCITELGKIVKEIWKIASR

Query:  LTFVSFHWCGQKMNKLAHALAELTIPMDEEAIWVEEVPIAVGELYNRE
           +SFH   ++ N +AH +A+  I + E+  WVEE+P A      R+
Subjt:  LTFVSFHWCGQKMNKLAHALAELTIPMDEEAIWVEEVPIAVGELYNRE

A0A7J9CXY0 RNase H domain-containing protein5.2e-1332.89Show/hide
Query:  MNTDAVIRVEMGSSRVGMVIRNERGEAMISMAKPVFGVTDVQLVEALVVQEGLLMAQAMGFQHVEVELDSTSTVNLVQQKTKCITELGKIVKEIWKIASR
        +N DAV +  +  S +G VI+N+ G  + S  +    V      EAL   + L  A  MGFQH+E+E DS +T+   Q+      E+G  ++EI ++A++
Subjt:  MNTDAVIRVEMGSSRVGMVIRNERGEAMISMAKPVFGVTDVQLVEALVVQEGLLMAQAMGFQHVEVELDSTSTVNLVQQKTKCITELGKIVKEIWKIASR

Query:  LTFVSFHWCGQKMNKLAHALAELTIPMDEEAIWVEEVPIAVGELYNREK
          F+ F +   + N +AH +A+   P+ E   WVEEVP +  ++ NR++
Subjt:  LTFVSFHWCGQKMNKLAHALAELTIPMDEEAIWVEEVPIAVGELYNREK

A0A7J9N7D8 RNase H domain-containing protein4.0e-1333.56Show/hide
Query:  MNTDAVIRVEMGSSRVGMVIRNERGEAMISMAKPVFGVTDVQLVEALVVQEGLLMAQAMGFQHVEVELDSTSTVNLVQQKTKCITELGKIVKEIWKIASR
        +N DAV +  +  S +G VI+N+ G  + S  +    V      EAL   + L  A  MGFQH+E+E DS +T+   Q+      E+G  ++EI ++A++
Subjt:  MNTDAVIRVEMGSSRVGMVIRNERGEAMISMAKPVFGVTDVQLVEALVVQEGLLMAQAMGFQHVEVELDSTSTVNLVQQKTKCITELGKIVKEIWKIASR

Query:  LTFVSFHWCGQKMNKLAHALAELTIPMDEEAIWVEEVPIAVGELYNREK
          F+ F +   + N +AH +A+   P+ E   WVEEVP +  E+ NR++
Subjt:  LTFVSFHWCGQKMNKLAHALAELTIPMDEEAIWVEEVPIAVGELYNREK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATACTGATGCTGTTATTCGAGTGGAAATGGGAAGTAGTAGAGTGGGCATGGTGATTCGAAACGAAAGAGGTGAAGCTATGATTTCCATGGCCAAACCTGTTTTTGG
AGTTACAGACGTGCAACTGGTTGAGGCTTTGGTAGTTCAAGAGGGTTTATTGATGGCACAGGCGATGGGCTTTCAACATGTTGAGGTCGAGTTAGATTCGACTTCAACTG
TGAATCTCGTACAACAGAAAACGAAATGCATCACTGAATTGGGCAAAATTGTGAAGGAAATTTGGAAAATTGCAAGCCGCCTTACTTTCGTGTCATTCCATTGGTGTGGT
CAAAAGATGAATAAATTGGCACATGCTCTAGCAGAATTGACAATTCCCATGGATGAAGAAGCAATTTGGGTGGAAGAAGTCCCGATAGCCGTGGGAGAGCTTTACAATCG
AGAGAAGATTGAGTTTTTTAGTGATCATGCAAGTGTTTATGTTCAACGCCATTTTTGTAATTCACGCTTTGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATACTGATGCTGTTATTCGAGTGGAAATGGGAAGTAGTAGAGTGGGCATGGTGATTCGAAACGAAAGAGGTGAAGCTATGATTTCCATGGCCAAACCTGTTTTTGG
AGTTACAGACGTGCAACTGGTTGAGGCTTTGGTAGTTCAAGAGGGTTTATTGATGGCACAGGCGATGGGCTTTCAACATGTTGAGGTCGAGTTAGATTCGACTTCAACTG
TGAATCTCGTACAACAGAAAACGAAATGCATCACTGAATTGGGCAAAATTGTGAAGGAAATTTGGAAAATTGCAAGCCGCCTTACTTTCGTGTCATTCCATTGGTGTGGT
CAAAAGATGAATAAATTGGCACATGCTCTAGCAGAATTGACAATTCCCATGGATGAAGAAGCAATTTGGGTGGAAGAAGTCCCGATAGCCGTGGGAGAGCTTTACAATCG
AGAGAAGATTGAGTTTTTTAGTGATCATGCAAGTGTTTATGTTCAACGCCATTTTTGTAATTCACGCTTTGTTTAA
Protein sequenceShow/hide protein sequence
MNTDAVIRVEMGSSRVGMVIRNERGEAMISMAKPVFGVTDVQLVEALVVQEGLLMAQAMGFQHVEVELDSTSTVNLVQQKTKCITELGKIVKEIWKIASRLTFVSFHWCG
QKMNKLAHALAELTIPMDEEAIWVEEVPIAVGELYNREKIEFFSDHASVYVQRHFCNSRFV