CuGenDBv2

Gene ID	Sed0009230
Organism	Sechium edule (Chayote v1)
Description	exportin-4 isoform X1
Genome location	LG08:26054029..26059558
RNA-Seq Expression	Sed0009230
Synteny	Sed0009230
Gene Ontology terms	GO:0051168 - nuclear export (biological process) GO:0005634 - nucleus (cellular component) GO:0005049 - nuclear export signal receptor activity (molecular function)
InterPro domains	IPR011989 - Armadillo-like helical IPR016024 - Armadillo-type fold IPR044189 - Exportin 4/7-like

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022933418.1 exportin-4 isoform X1 [Cucurbita moschata]

6.5e-22

94.92

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Query:  MHVNPSAAEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSALTAD
        MH+NPSAAEATILSLRQSPHPYQTCQFILENSQV NARFQAAAAIRDAAIREWS LTAD
Subjt:  MHVNPSAAEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSALTAD

XP_022933421.1 exportin-4 isoform X4 [Cucurbita moschata]

6.5e-22

94.92

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Query:  MHVNPSAAEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSALTAD
        MH+NPSAAEATILSLRQSPHPYQTCQFILENSQV NARFQAAAAIRDAAIREWS LTAD
Subjt:  MHVNPSAAEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSALTAD

XP_022966402.1 exportin-4 isoform X1 [Cucurbita maxima]

6.5e-22

94.92

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Query:  MHVNPSAAEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSALTAD
        MH+NPSAAEATILSLRQSPHPYQTCQFILENSQV NARFQAAAAIRDAAIREWS LTAD
Subjt:  MHVNPSAAEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSALTAD

XP_023530569.1 exportin-4 isoform X1 [Cucurbita pepo subsp. pepo]

6.5e-22

94.92

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Query:  MHVNPSAAEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSALTAD
        MH+NPSAAEATILSLRQSPHPYQTCQFILENSQV NARFQAAAAIRDAAIREWS LTAD
Subjt:  MHVNPSAAEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSALTAD

XP_023530571.1 exportin-4 isoform X3 [Cucurbita pepo subsp. pepo]

6.5e-22

94.92

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Query:  MHVNPSAAEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSALTAD
        MH+NPSAAEATILSLRQSPHPYQTCQFILENSQV NARFQAAAAIRDAAIREWS LTAD
Subjt:  MHVNPSAAEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSALTAD

TrEMBL top hits

e value

%identity

Alignment

A0A6J1HMV7 exportin-4 isoform X1

3.1e-22

94.92

Show/hide

Query:  MHVNPSAAEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSALTAD
        MH+NPSAAEATILSLRQSPHPYQTCQFILENSQV NARFQAAAAIRDAAIREWS LTAD
Subjt:  MHVNPSAAEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSALTAD

A0A6J1HPA9 exportin-4 isoform X4

3.1e-22

94.92

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Query:  MHVNPSAAEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSALTAD
        MH+NPSAAEATILSLRQSPHPYQTCQFILENSQV NARFQAAAAIRDAAIREWS LTAD
Subjt:  MHVNPSAAEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSALTAD

A0A6J1HS30 exportin-4 isoform X3

3.1e-22

94.92

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Query:  MHVNPSAAEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSALTAD
        MH+NPSAAEATILSLRQSPHPYQTCQFILENSQV NARFQAAAAIRDAAIREWS LTAD
Subjt:  MHVNPSAAEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSALTAD

A0A6J1HS55 exportin-4 isoform X5

3.1e-22

94.92

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Query:  MHVNPSAAEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSALTAD
        MH+NPSAAEATILSLRQSPHPYQTCQFILENSQV NARFQAAAAIRDAAIREWS LTAD
Subjt:  MHVNPSAAEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSALTAD

A0A6J1HTQ6 exportin-4 isoform X2

3.1e-22

94.92

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Query:  MHVNPSAAEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSALTAD
        MH+NPSAAEATILSLRQSPHPYQTCQFILENSQV NARFQAAAAIRDAAIREWS LTAD
Subjt:  MHVNPSAAEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSALTAD

SwissProt top hits

e value

%identity

Alignment

Q499Y0 Exportin-4

5.7e-05

48.98

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Query:  AEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSAL
        AE   LS R+S  P+  C+ ILE S+V    FQAA AI +A +REW  L
Subjt:  AEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSAL

Q5ZMR9 Exportin-4

7.5e-05

48.98

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Query:  AEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSAL
        AE   LS R+S  P+  C+ ILE S+V    FQAA AI +A +REW  L
Subjt:  AEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSAL

Q802D3 Exportin-4

7.5e-05

48.98

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Query:  AEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSAL
        AE   LS R+S  P+  C+ ILE S+V    FQAA AI +A +REW  L
Subjt:  AEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSAL

Q9C0E2 Exportin-4

7.5e-05

48.98

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Query:  AEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSAL
        AE   LS R+S  P+  C+ ILE S+V    FQAA AI +A +REW  L
Subjt:  AEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSAL

Q9ESJ0 Exportin-4

7.5e-05

48.98

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Query:  AEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSAL
        AE   LS R+S  P+  C+ ILE S+V    FQAA AI +A +REW  L
Subjt:  AEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSAL

Arabidopsis top hits

e value

%identity

Alignment

AT3G04490.1 unknown protein

3.6e-18

76.79

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Query:  NPSAAEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSALTAD
        NP AAEATILSL QSP PY+ C++ILENSQV NARFQAAAAIR++AIREWS L  D
Subjt:  NPSAAEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSALTAD

AT4G38092.1 unknown protein

7.9e-18

76.79

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Query:  NPSAAEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSALTAD
        NP AAEATILSL QSP PY+ C++ILENSQV NARFQAAAAIR +AIREWS L  D
Subjt:  NPSAAEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSALTAD

Sequences

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CDS sequence

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ATGCACGTCAATCCATCTGCAGCTGAGGCAACTATTCTATCACTTCGCCAGTCGCCTCATCCGTATCAAACATGCCAGTTCATTCTTGAAAATTCTCAGGTGCCTAATGC
ACGATTTCAGGCTGCTGCTGCAATTCGAGATGCTGCTATTAGAGAGTGGAGTGCTCTAACCGCTGATGCGCACTTGAAAGATAAAAACATTGTTAATTTACTTGTGCTAT
TTTGGCAACGTTTTTGGGGTATTGAAGGAAGTGGAGGAGAATGA

mRNA sequence

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Protein sequence

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MHVNPSAAEATILSLRQSPHPYQTCQFILENSQVPNARFQAAAAIRDAAIREWSALTADAHLKDKNIVNLLVLFWQRFWGIEGSGGE

Sed0009230 (gene) of Chayote v1 genome