CuGenDBv2

Gene ID	Sed0009265
Organism	Sechium edule (Chayote v1)
Description	Elongin-C
Genome location	LG13:19549700..19552476
RNA-Seq Expression	Sed0009265
Synteny	Sed0009265
Gene Ontology terms	GO:0006414 - translational elongation (biological process) GO:0006511 - ubiquitin-dependent protein catabolic process (biological process) GO:0016310 - phosphorylation (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0070449 - elongin complex (cellular component) GO:0003746 - translation elongation factor activity (molecular function) GO:0016301 - kinase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008457436.1 PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis melo]

2.3e-47

97.96

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Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAES+HREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

XP_022158132.1 elongin-C [Momordica charantia]

1.0e-47

98.98

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Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAES+HREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

XP_022964706.1 elongin-C-like [Cucurbita moschata]

1.1e-46

96.94

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Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEETVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAES+HREVTFPEISTTILEKICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

XP_031741205.1 LOW QUALITY PROTEIN: elongin-C [Cucumis sativus]

3.3e-46

95.92

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Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAES+HREVTFPEISTTILEKICQYFHWNL F SGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

XP_038895699.1 elongin-C [Benincasa hispida]

5.0e-47

97.96

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Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAES+HREVTFPEISTTILEKICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LY44 Elongin-C

1.1e-47

97.96

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Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAES+HREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

A0A1S3C6T3 Elongin-C

1.1e-47

97.96

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Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAES+HREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

A0A6J1DWE1 Elongin-C

4.9e-48

98.98

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Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAES+HREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

A0A6J1HJP6 Elongin-C

5.4e-47

96.94

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Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEETVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAES+HREVTFPEISTTILEKICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

A0A6J1KFM7 Elongin-C

1.0e-45

94.9

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Query:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAES+HREVTFPEIST ILEKICQYF+W+LQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

SwissProt top hits

e value

%identity

Alignment

P83940 Elongin-C

1.3e-18

47.83

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Query:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQF--ASGKETEFPIEPELTLELMMAANYL

P83941 Elongin-C

1.3e-18

47.83

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Query:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQF--ASGKETEFPIEPELTLELMMAANYL

Q15369 Elongin-C

1.3e-18

47.83

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Query:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQF--ASGKETEFPIEPELTLELMMAANYL

Q2KII4 Elongin-C

1.3e-18

47.83

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Query:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQF--ASGKETEFPIEPELTLELMMAANYL

Q9USX9 Elongin-C

3.7e-16

43.16

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Query:  KEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQFASGKE-TEFPIEPELTLELMMAANYL
        ++E V+LIS +GF F++ K+ A +S TIR +L + G F+E++  E TFP+I  T+LEK+C+Y H+N ++ +  +  +F I PE+ LEL++ A YL
Subjt:  KEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQFASGKE-TEFPIEPELTLELMMAANYL

Arabidopsis top hits

e value

%identity

Alignment

AT5G59140.1 BTB/POZ domain-containing protein

2.4e-39

81.91

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Query:  ETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        ETVKLIS EGFEFVI ++AAMVSQTIR+MLTSPG F+ESK   VTFP+ISTTILEKICQYF+W+LQ++ GKETEF IEPELTLELMMAANYLHT
Subjt:  ETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

Sequences

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CDS sequence

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ATGAAGAAGGAAGAGACCGTAAAATTGATCAGCGCTGAGGGTTTCGAGTTCGTGATTCACAAAGATGCGGCCATGGTTTCTCAGACGATTCGGAACATGCTTACTTCGCC
AGGAAATTTTGCTGAATCGAAGCACCGAGAAGTCACTTTTCCTGAGATTAGCACCACTATTCTCGAGAAGATTTGCCAATATTTTCACTGGAATCTTCAATTCGCCAGTG
GAAAAGAGACTGAGTTCCCTATTGAACCTGAATTAACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGA

mRNA sequence

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CAAAAACAAAAACAAAATATCAAATGTCAATGGAACAATTAAAAAATTGCATAGAGCAACCAAATTAGAAAAAGAAAAAGAAAAAAGTAGAATTGAAACCATTTTCTCCA
TTTTTCTCTCAAGTTTCAGATATAGTTCGAGAGCAAAAATGAAGAAGGAAGAGACCGTAAAATTGATCAGCGCTGAGGGTTTCGAGTTCGTGATTCACAAAGATGCGGCC
ATGGTTTCTCAGACGATTCGGAACATGCTTACTTCGCCAGGAAATTTTGCTGAATCGAAGCACCGAGAAGTCACTTTTCCTGAGATTAGCACCACTATTCTCGAGAAGAT
TTGCCAATATTTTCACTGGAATCTTCAATTCGCCAGTGGAAAAGAGACTGAGTTCCCTATTGAACCTGAATTAACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATA
CATGAAATAGTGCACAGAGACTCATTTGACTTTGTAATCAGTTGCTTCATTTCACTCATTGGAACACCATGTCATCTATTGAGCACTGGGATTCACTCCAGGGCACTATT
ATTATTATAGAGACAAATGTTGTATTCTAATTTTTTGAAATAAGGGTAACCACGCCCGTCCCTAGGCCAAACCCAAATGTTGTATTCTAATTTTGTGCTTGGACCAATAT
TAACTTCTCAAGAGTTGATTACCTTAATGAATCTAAGTTCTTGGATGAACATTTGAATTAGCTCCTGTGGATTTAGAATGTA

Protein sequence

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MKKEETVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESKHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

Sed0009265 (gene) of Chayote v1 genome