| GenBank top hits | e value | %identity | Alignment |
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| KAG6593746.1 RNA polymerase sigma factor sigB, partial [Cucurbita argyrosperma subsp. sororia] | 4.8e-270 | 85.54 | Show/hide |
Query: MSCLVPQFKCRPVTFSIQFKISAISI--TTTPNCSHLHSFLPIAISTCSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERL
MSCL+PQFKC P TFSIQFK AI+I T TP SH H+FLP A ST KVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERL
Subjt: MSCLVPQFKCRPVTFSIQFKISAISI--TTTPNCSHLHSFLPIAISTCSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERL
Query: RSYLSAVESSLASTLVTSEEATIAAAAAEAVALAKAAVRVANDAVLLANNINSSRTVTESQSARKSDALHFKWDQFMESERADIIGEPVGVNNRPVEGDA
RSYL AVESSLASTL+TSEEATIAAAAAEAVALAKAAV+ ANDA LL NN NS+R+VT+SQS+ +S+ALHFKWDQFMESERADIIGEPVGVNNRPVEGDA
Subjt: RSYLSAVESSLASTLVTSEEATIAAAAAEAVALAKAAVRVANDAVLLANNINSSRTVTESQSARKSDALHFKWDQFMESERADIIGEPVGVNNRPVEGDA
Query: LEQSTAESDDMDPTSEDLELLQDELSKIVAVRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELEL
LE STAESDDM+PTSE+LELL+DE SK +AVRS RQTERKARRTRA+EK TSVVSLK SSSRKKRNS QEVDY+DPLRYLRATTS SKLLTAS+ELEL
Subjt: LEQSTAESDDMDPTSEDLELLQDELSKIVAVRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELEL
Query: SDGIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKG
S+GIQDLLKLERL+EELA R+GNEPTFAQWAAAAGV+Q+TLRKRLN GT CKDKMIKSNIRLVISIAK YQG GMNL+DLVQEGCRGLVRGAEKFDASKG
Subjt: SDGIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKG
Query: FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVIS
FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV+ATY+VKEARKQLY+ NGR P DEEIA AAGLSMKRLA+VLM PKAPRSL+QK G N +LKPSEVIS
Subjt: FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVIS
Query: DPEAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQYLM
DPEA +AEDLL+KQFMKQ+LEKVL+SL PRERQ+IRWR+GMEDGRMKTLQEIGE+MG+SRER+RQIE CAFRKLKNKKRTKHLQQYLM
Subjt: DPEAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQYLM
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| XP_022155781.1 RNA polymerase sigma factor sigB [Momordica charantia] | 2.7e-273 | 86.2 | Show/hide |
Query: MSCLVPQFKCRPVTFSIQFKISAISITTTPNCSHLHSFLPIAISTCSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRS
MSCL+PQFKC P TFSIQFK +AI++TTT N SH H+FLP A S+C+KVRDPHSLRTQCILSAASP TSTGTATTFNV+RLKLPP D NTDS+SAERLRS
Subjt: MSCLVPQFKCRPVTFSIQFKISAISITTTPNCSHLHSFLPIAISTCSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRS
Query: YLSAVESSLASTLVTSEEATIAAAAAEAVALAKAAVRVANDAVLLANNINSSRTVTESQSARKSDALHFKWDQFMESERADIIGEPVGVNNRPVEGDALE
YLSAVESS ASTL+TSEEATIAAAAAEAV LAKAAV+VA DA LL NN NSS+T +SQS+ KSDALHFKWDQFMESERADIIG PVGVNNRP EGDAL+
Subjt: YLSAVESSLASTLVTSEEATIAAAAAEAVALAKAAVRVANDAVLLANNINSSRTVTESQSARKSDALHFKWDQFMESERADIIGEPVGVNNRPVEGDALE
Query: QSTAESDDMDPTSEDLELLQDELSKIVAVRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELELSD
TAESD DPT+E+LELLQDELS I AVRS RQTER+A+RTRAAEK TSVVS+K SSSRKKRNSVQEVDYSDPLRYLRATTS S+LLTA+EELELS+
Subjt: QSTAESDDMDPTSEDLELLQDELSKIVAVRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELELSD
Query: GIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFK
GIQDLLKLERLQEEL +R+G EPTFAQWAAAAGV+Q+TLRKRLN GTFCKDKMIKSNIRLVISIAK YQGAGMNL+DLVQEGCRGLVRGAEKFDASKGFK
Subjt: GIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFK
Query: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVISDP
FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV+ATYRVKEARKQLYSENGRHP DEEIAEAAGLSMKRLA+VLM PKAPRSL+QKIG N +LKPSEVISDP
Subjt: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVISDP
Query: EAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQYLMS
EAE++EDLL+KQFMKQDLEKVL+SL PRERQVIRWRFGMEDGRMKTLQEIGEIMG+SRER+RQIESCAFRKLKNKKRTKHLQQYLMS
Subjt: EAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQYLMS
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| XP_022964550.1 RNA polymerase sigma factor sigB [Cucurbita moschata] | 7.4e-271 | 85.67 | Show/hide |
Query: MSCLVPQFKCRPVTFSIQFKISAISITTTPNCSHLHSFLPIAISTCSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRS
MSCL+PQFKC P TFSIQFK A +IT TP SH H+FLP A ST K RDPHSLRTQCILSAASPPT TGTATTFNVDRLKLPPFDTNTDSVSAERLRS
Subjt: MSCLVPQFKCRPVTFSIQFKISAISITTTPNCSHLHSFLPIAISTCSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRS
Query: YLSAVESSLASTLVTSEEATIAAAAAEAVALAKAAVRVANDAVLLANNINSSRTVTESQSARKSDALHFKWDQFMESERADIIGEPVGVNNRPVEGDALE
YL AVESSLASTL+TSEEATIAAAAAEAVALAKAAV+ ANDA LL NN NSSR+VT+SQS+ +S+ALHFKWDQFMESERADIIGEPVGVNNRPVEGDALE
Subjt: YLSAVESSLASTLVTSEEATIAAAAAEAVALAKAAVRVANDAVLLANNINSSRTVTESQSARKSDALHFKWDQFMESERADIIGEPVGVNNRPVEGDALE
Query: QSTAESDDMDPTSEDLELLQDELSKIVAVRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELELSD
STAESDDM+PTSE+LELL+DE SK +AVRS RQTERKARRTRA+EK TSVVSLK SSSRKKRNS QEVDY+DPLRYLRATTS SKLLTAS+ELELS+
Subjt: QSTAESDDMDPTSEDLELLQDELSKIVAVRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELELSD
Query: GIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFK
GIQDLLKLERL+EELA R+GNEPTFAQWAAAAGV+Q+TLRKRLN GTFCKDKMIKSNIRLVISIAK YQG GMNL+DLVQEGCRGLVRGAEKFDASKGFK
Subjt: GIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFK
Query: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVISDP
FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV+ATY+VKEARKQLY+ NGR P DEEIA AAGLSMKRLA+VLM PKAPRSL+QK G N +LKPSEVISDP
Subjt: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVISDP
Query: EAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQYLM
EA +AEDLL+KQFMKQ+LEKVL+SL PRERQ+IRWR+GMEDGRMKTLQEIGE+MG+SRER+RQIE CAFRKLKNKKRTKHLQQYLM
Subjt: EAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQYLM
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| XP_023000238.1 RNA polymerase sigma factor sigB [Cucurbita maxima] | 2.6e-271 | 86.18 | Show/hide |
Query: MSCLVPQFKCRPVTFSIQFKISAISITTTPNCSHLHSFLPIAISTCSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRS
MSCL+PQFKC P TFSIQFK AI+IT TP SH H+FLP A ST KVRDPHSLRTQCILSAA TSTGTATTFNVDRLKLPPFDTNTDSVSAERLRS
Subjt: MSCLVPQFKCRPVTFSIQFKISAISITTTPNCSHLHSFLPIAISTCSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRS
Query: YLSAVESSLASTLVTSEEATIAAAAAEAVALAKAAVRVANDAVLLANNINSSRTVTESQSARKSDALHFKWDQFMESERADIIGEPVGVNNRPVEGDALE
YL AVESSLASTL+TSEEATIAAAAAEAVALAKAAV+ ANDA LL NN NS+R+VT+SQS+ KS+ALHFKWDQFMESERADIIGEPVGVNNRPVEGDALE
Subjt: YLSAVESSLASTLVTSEEATIAAAAAEAVALAKAAVRVANDAVLLANNINSSRTVTESQSARKSDALHFKWDQFMESERADIIGEPVGVNNRPVEGDALE
Query: QSTAESDDMDPTSEDLELLQDELSKIVAVRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELELSD
STAESDDM+PTSE+LELLQDE SK +AVRSNRQTERKARRTRA+EK TSVVSLK SSSRKKRNS QEVDY+DPLRYLRATTS SKLLTAS+ELELS+
Subjt: QSTAESDDMDPTSEDLELLQDELSKIVAVRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELELSD
Query: GIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFK
GIQDLLKLERL+EELA R+GNEPTFAQWAAAAGV+Q+TLRKRLN GTFCKDKMIKSNIRLVISIAK YQG GMNL+DLVQEGCRGLVRGAEKFDASKGFK
Subjt: GIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFK
Query: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVISDP
FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV+ATY+VKEARKQLY+ NGR PADEEIA AAGLSMKRLA+VLM PKAPRSL+QK G N +LKPSEVISDP
Subjt: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVISDP
Query: EAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQYLM
EA +AEDLL+KQFMKQ+LEKVL+SL PRERQ+IRWR+GMEDGRMKTLQEIGE+MG+SRER+RQIE CAFRKLKNKKRTKHLQQYLM
Subjt: EAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQYLM
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| XP_023515004.1 RNA polymerase sigma factor sigB [Cucurbita pepo subsp. pepo] | 1.7e-270 | 85.54 | Show/hide |
Query: MSCLVPQFKCRPVTFSIQFKISAISI--TTTPNCSHLHSFLPIAISTCSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERL
MSCL+PQFKC P TFSIQFK AI+I T TP SH H+FLP A ST KVRDPH LRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERL
Subjt: MSCLVPQFKCRPVTFSIQFKISAISI--TTTPNCSHLHSFLPIAISTCSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERL
Query: RSYLSAVESSLASTLVTSEEATIAAAAAEAVALAKAAVRVANDAVLLANNINSSRTVTESQSARKSDALHFKWDQFMESERADIIGEPVGVNNRPVEGDA
RSYL AVESSLASTL+TSEEATIAAAAAEAVALAKAAV+ ANDA LL NN NS+R+VT+SQS+ +S+ALHFKWDQFMESERADIIGEPVGVNNRPVEGDA
Subjt: RSYLSAVESSLASTLVTSEEATIAAAAAEAVALAKAAVRVANDAVLLANNINSSRTVTESQSARKSDALHFKWDQFMESERADIIGEPVGVNNRPVEGDA
Query: LEQSTAESDDMDPTSEDLELLQDELSKIVAVRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELEL
LE STAESDDM+PTSE+LELL+DE SK +AVRS RQTERKARRTRA+EK TSVVSLK SSSRKKRNS QEVDY+DPLRYLRATTS SKLLTAS+ELEL
Subjt: LEQSTAESDDMDPTSEDLELLQDELSKIVAVRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELEL
Query: SDGIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKG
S+GIQDLLKLERL+EELA R+GNEPTFAQWAAAAGV+Q+TLRKRLN GTFCKDKMIKSNIRLVISIAK YQG GMNL+DLVQEGCRGLVRGAEKFDASKG
Subjt: SDGIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKG
Query: FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVIS
FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV+ATY+VKEARKQLY+ NGR P DEEIA AAGLSMKRLA+VLM PKAPRSL+QK G N +LKPSEVIS
Subjt: FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVIS
Query: DPEAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQYLM
DPEA +AEDLL+KQFMKQ+LEKVL+SL PRERQ+IRWR+GMEDGRMKTLQEIGE+MG+SRER+RQIE CAFRKLKNKKRTKHLQQYLM
Subjt: DPEAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQYLM
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| TrEMBL top hits | e value | %identity | Alignment |
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| A0A0A0K917 RNA polymerase sigma factor | 9.8e-269 | 85.01 | Show/hide |
Query: MSCLVPQFKCRPVTFSIQFKISAISITTTPNCSHLHSFLPIAISTCSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRS
MSCL+PQFKC P TFSIQFK T N SH HSFLP A S+ +KVRDPHSLRTQCILSAASPPTSTGTATT +VDRLKLPPFDTNTDSVS ERLRS
Subjt: MSCLVPQFKCRPVTFSIQFKISAISITTTPNCSHLHSFLPIAISTCSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRS
Query: YLSAVESSLASTLVTSEEATIAAAAAEAVALAKAAVRVANDAVLLANNINSSRTVTESQSARKSDALHFKWDQFMESERADIIGEPVGVNNRPVEGDALE
YL AVESSLASTL+TSEEA+IAAAAAEAV LAKAAV+VA DA LLANNINSSR T+SQS+ K DALHFKW QFMESERADIIGEPVGVN RP+EGDALE
Subjt: YLSAVESSLASTLVTSEEATIAAAAAEAVALAKAAVRVANDAVLLANNINSSRTVTESQSARKSDALHFKWDQFMESERADIIGEPVGVNNRPVEGDALE
Query: QSTAESDDMDPTSEDLELLQDELSKIVAVRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELELSD
ST ESDDM+PTSE+LELLQDELS+ + V+S RQTERKARRTRAAEKT TSV+S K SSSRKKRNSVQEVDYSDPLRYLRATT+TS+LLTA+EELELS+
Subjt: QSTAESDDMDPTSEDLELLQDELSKIVAVRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELELSD
Query: GIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFK
GIQDLLKLERLQEEL +R+GNEPTFAQWAAAAGV+Q+TLRKRLN GT CKDKMIKSNIRLVISIAK YQGAGMNL+DLVQEGCRGLVRGAEKFDASKGFK
Subjt: GIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFK
Query: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVISDP
FSTYAHWWIKQAVRK LSDQSRTIRLPFHMV+ATYRVKEARKQL ENGRHP D+EIAEAAGLSMKRLA+VLM PKAPRSL+QKIG N +LKPSEVISDP
Subjt: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVISDP
Query: EAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQYLMS
EAE+ ED+L+KQFMKQDLEKVL+SL PRE+QVIRWRFGMEDGRMKTLQEIGEIMG+SRER+RQIESCAFRKLKNKKRTKHLQQY+MS
Subjt: EAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQYLMS
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| A0A1S3CD00 RNA polymerase sigma factor | 3.4e-269 | 85.18 | Show/hide |
Query: MSCLVPQFKCRPVTFSIQFKISAISITTTPNCSHLHSFLPIAISTCSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRS
MSCL+PQFKC P TFSIQFK T N SH HSF+P A S+ +KVRDPHSLRTQCILSAASPPTSTGTATT NVDRLKLPPFDTNTDSVS ERLRS
Subjt: MSCLVPQFKCRPVTFSIQFKISAISITTTPNCSHLHSFLPIAISTCSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRS
Query: YLSAVESSLASTLVTSEEATIAAAAAEAVALAKAAVRVANDAVLLANNINSSRTVTESQSARKSDALHFKWDQFMESERADIIGEPVGVNNRPVEGDALE
YL AVESSLASTL+TSEEATIAAAAAEAV LAKAAV+VA DA LLANNINSSR T+SQ + K DALHFKW QFMESERADIIGEPVGVN RP+EGDALE
Subjt: YLSAVESSLASTLVTSEEATIAAAAAEAVALAKAAVRVANDAVLLANNINSSRTVTESQSARKSDALHFKWDQFMESERADIIGEPVGVNNRPVEGDALE
Query: QSTAESDDMDPTSEDLELLQDELSKIVAVRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELELSD
ST ESDD++PTS++LELLQDELS+ + V+S RQTERKARRTRAAEKT TSVV K SSSRKKR+S+QEVDYSDPLRYLRATTSTS+LLTA+EELELS+
Subjt: QSTAESDDMDPTSEDLELLQDELSKIVAVRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELELSD
Query: GIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFK
GIQDLLKLERLQEELA+R+GNEPTFAQWAAAAGV+Q+TLRKRLN GT CKDKMIKSNIRLVISIAK YQGAGMNL+DLVQEGCRGLVRGAEKFDASKGFK
Subjt: GIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFK
Query: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVISDP
FSTYAHWWIKQAVRK LSDQSRTIRLPFHMV+ATYRVKEARKQL SENGRHP D+EIAEAAGLSMKRLA+VLM PKAPRSL+QKIG N +LKPSEVISDP
Subjt: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVISDP
Query: EAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQYLMS
EAE+AED+L+KQFMKQDLEKVL+SL PRE+QVIRWRFGMEDGRMKTLQEIGEIMG+SRER+RQIESCAFRKLKNKKRTKHLQQYLMS
Subjt: EAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQYLMS
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| A0A6J1DSR7 RNA polymerase sigma factor | 1.3e-273 | 86.2 | Show/hide |
Query: MSCLVPQFKCRPVTFSIQFKISAISITTTPNCSHLHSFLPIAISTCSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRS
MSCL+PQFKC P TFSIQFK +AI++TTT N SH H+FLP A S+C+KVRDPHSLRTQCILSAASP TSTGTATTFNV+RLKLPP D NTDS+SAERLRS
Subjt: MSCLVPQFKCRPVTFSIQFKISAISITTTPNCSHLHSFLPIAISTCSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRS
Query: YLSAVESSLASTLVTSEEATIAAAAAEAVALAKAAVRVANDAVLLANNINSSRTVTESQSARKSDALHFKWDQFMESERADIIGEPVGVNNRPVEGDALE
YLSAVESS ASTL+TSEEATIAAAAAEAV LAKAAV+VA DA LL NN NSS+T +SQS+ KSDALHFKWDQFMESERADIIG PVGVNNRP EGDAL+
Subjt: YLSAVESSLASTLVTSEEATIAAAAAEAVALAKAAVRVANDAVLLANNINSSRTVTESQSARKSDALHFKWDQFMESERADIIGEPVGVNNRPVEGDALE
Query: QSTAESDDMDPTSEDLELLQDELSKIVAVRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELELSD
TAESD DPT+E+LELLQDELS I AVRS RQTER+A+RTRAAEK TSVVS+K SSSRKKRNSVQEVDYSDPLRYLRATTS S+LLTA+EELELS+
Subjt: QSTAESDDMDPTSEDLELLQDELSKIVAVRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELELSD
Query: GIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFK
GIQDLLKLERLQEEL +R+G EPTFAQWAAAAGV+Q+TLRKRLN GTFCKDKMIKSNIRLVISIAK YQGAGMNL+DLVQEGCRGLVRGAEKFDASKGFK
Subjt: GIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFK
Query: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVISDP
FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV+ATYRVKEARKQLYSENGRHP DEEIAEAAGLSMKRLA+VLM PKAPRSL+QKIG N +LKPSEVISDP
Subjt: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVISDP
Query: EAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQYLMS
EAE++EDLL+KQFMKQDLEKVL+SL PRERQVIRWRFGMEDGRMKTLQEIGEIMG+SRER+RQIESCAFRKLKNKKRTKHLQQYLMS
Subjt: EAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQYLMS
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| A0A6J1HL45 RNA polymerase sigma factor sigB | 3.6e-271 | 85.67 | Show/hide |
Query: MSCLVPQFKCRPVTFSIQFKISAISITTTPNCSHLHSFLPIAISTCSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRS
MSCL+PQFKC P TFSIQFK A +IT TP SH H+FLP A ST K RDPHSLRTQCILSAASPPT TGTATTFNVDRLKLPPFDTNTDSVSAERLRS
Subjt: MSCLVPQFKCRPVTFSIQFKISAISITTTPNCSHLHSFLPIAISTCSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRS
Query: YLSAVESSLASTLVTSEEATIAAAAAEAVALAKAAVRVANDAVLLANNINSSRTVTESQSARKSDALHFKWDQFMESERADIIGEPVGVNNRPVEGDALE
YL AVESSLASTL+TSEEATIAAAAAEAVALAKAAV+ ANDA LL NN NSSR+VT+SQS+ +S+ALHFKWDQFMESERADIIGEPVGVNNRPVEGDALE
Subjt: YLSAVESSLASTLVTSEEATIAAAAAEAVALAKAAVRVANDAVLLANNINSSRTVTESQSARKSDALHFKWDQFMESERADIIGEPVGVNNRPVEGDALE
Query: QSTAESDDMDPTSEDLELLQDELSKIVAVRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELELSD
STAESDDM+PTSE+LELL+DE SK +AVRS RQTERKARRTRA+EK TSVVSLK SSSRKKRNS QEVDY+DPLRYLRATTS SKLLTAS+ELELS+
Subjt: QSTAESDDMDPTSEDLELLQDELSKIVAVRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELELSD
Query: GIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFK
GIQDLLKLERL+EELA R+GNEPTFAQWAAAAGV+Q+TLRKRLN GTFCKDKMIKSNIRLVISIAK YQG GMNL+DLVQEGCRGLVRGAEKFDASKGFK
Subjt: GIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFK
Query: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVISDP
FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV+ATY+VKEARKQLY+ NGR P DEEIA AAGLSMKRLA+VLM PKAPRSL+QK G N +LKPSEVISDP
Subjt: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVISDP
Query: EAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQYLM
EA +AEDLL+KQFMKQ+LEKVL+SL PRERQ+IRWR+GMEDGRMKTLQEIGE+MG+SRER+RQIE CAFRKLKNKKRTKHLQQYLM
Subjt: EAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQYLM
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| A0A6J1KM29 RNA polymerase sigma factor | 1.2e-271 | 86.18 | Show/hide |
Query: MSCLVPQFKCRPVTFSIQFKISAISITTTPNCSHLHSFLPIAISTCSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRS
MSCL+PQFKC P TFSIQFK AI+IT TP SH H+FLP A ST KVRDPHSLRTQCILSAA TSTGTATTFNVDRLKLPPFDTNTDSVSAERLRS
Subjt: MSCLVPQFKCRPVTFSIQFKISAISITTTPNCSHLHSFLPIAISTCSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRS
Query: YLSAVESSLASTLVTSEEATIAAAAAEAVALAKAAVRVANDAVLLANNINSSRTVTESQSARKSDALHFKWDQFMESERADIIGEPVGVNNRPVEGDALE
YL AVESSLASTL+TSEEATIAAAAAEAVALAKAAV+ ANDA LL NN NS+R+VT+SQS+ KS+ALHFKWDQFMESERADIIGEPVGVNNRPVEGDALE
Subjt: YLSAVESSLASTLVTSEEATIAAAAAEAVALAKAAVRVANDAVLLANNINSSRTVTESQSARKSDALHFKWDQFMESERADIIGEPVGVNNRPVEGDALE
Query: QSTAESDDMDPTSEDLELLQDELSKIVAVRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELELSD
STAESDDM+PTSE+LELLQDE SK +AVRSNRQTERKARRTRA+EK TSVVSLK SSSRKKRNS QEVDY+DPLRYLRATTS SKLLTAS+ELELS+
Subjt: QSTAESDDMDPTSEDLELLQDELSKIVAVRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELELSD
Query: GIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFK
GIQDLLKLERL+EELA R+GNEPTFAQWAAAAGV+Q+TLRKRLN GTFCKDKMIKSNIRLVISIAK YQG GMNL+DLVQEGCRGLVRGAEKFDASKGFK
Subjt: GIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFK
Query: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVISDP
FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV+ATY+VKEARKQLY+ NGR PADEEIA AAGLSMKRLA+VLM PKAPRSL+QK G N +LKPSEVISDP
Subjt: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVISDP
Query: EAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQYLM
EA +AEDLL+KQFMKQ+LEKVL+SL PRERQ+IRWR+GMEDGRMKTLQEIGE+MG+SRER+RQIE CAFRKLKNKKRTKHLQQYLM
Subjt: EAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQYLM
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| SwissProt top hits | e value | %identity | Alignment |
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| O22056 RNA polymerase sigma factor sigB | 8.8e-182 | 60.93 | Show/hide |
Query: SCLVPQFKCRPVTFSIQFKISAISITTTPNCSHLHSFLPIAISTCSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSY
SCL+PQFKC P +FSI F+ T C+ H+ + + QC +S SP T + +V +L+LP FDT++DS+ ++R +Y
Subjt: SCLVPQFKCRPVTFSIQFKISAISITTTPNCSHLHSFLPIAISTCSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSY
Query: ---------LSAVESSLASTLVTSEEATIAAAAAEAVALAKAAVRVANDAVLLANNINSSRTVTESQSARKSDALHFKWDQFMESERADIIGEPVGVNNR
+E+ + TL+TS+EA + AAAAEAVALA+AAV+VA DA L N+ N++ +T S + ++S KWDQF E ERA I+G + V++
Subjt: ---------LSAVESSLASTLVTSEEATIAAAAAEAVALAKAAVRVANDAVLLANNINSSRTVTESQSARKSDALHFKWDQFMESERADIIGEPVGVNNR
Query: PVEGDALEQSTAESDDM----DPTSEDLELLQDELSKIVAVRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSK
+ D + S + + + E++ELL+++ S +AVRS RQTERKARR + EKT + + S+K SS +KKR QEVD++DPLRYLR TTS+SK
Subjt: PVEGDALEQSTAESDDM----DPTSEDLELLQDELSKIVAVRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSK
Query: LLTASEELELSDGIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVR
LLT EE ELS GIQDLLKLERLQ EL +R G +PTFAQWA+AAGVDQK+LR+R++ GT CKDKMIKSNIRLVISIAK YQGAGMNL+DLVQEGCRGLVR
Subjt: LLTASEELELSDGIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVR
Query: GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFN
GAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSR IRLPFHMV+ATYRVKEARKQLYSE G+HP +EEIAEA GLSMKRL +VL++PK PRSLDQKIG N
Subjt: GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFN
Query: LDLKPSEVISDPEAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQYLMS
+LKPSEVI+DPEA ++ED+L+K+FM+QDL+KVL+SL RE+QVIRWRFGMEDGRMKTLQEIGE+MG+SRERVRQIES AFRKLKNKKR HLQQYL++
Subjt: LDLKPSEVISDPEAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQYLMS
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| P26683 RNA polymerase sigma factor SigA | 1.0e-73 | 44.21 | Show/hide |
Query: SSSSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELELSDGIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSN
++ SR++ S ++ D +R +LL A EE+EL+ I DLL+LER++E L+++ +P ++WA A + R RL+ G KDKM++SN
Subjt: SSSSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELELSDGIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSN
Query: IRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEI
+RLV+SIAK Y G++ +DL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ + R+K+ K L E GR P +EEI
Subjt: IRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEI
Query: AEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVISDPEAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGIS
A +++++L + + + P SL+ IG D + + I + + E+ ED + K +++DLEKVL+SL PRER V+R R+G++DGRMKTL+EIG+I ++
Subjt: AEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVISDPEAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGIS
Query: RERVRQIESCAFRKLKNKKRTKHLQQYL
RER+RQIE+ A RKL++ R L++Y+
Subjt: RERVRQIESCAFRKLKNKKRTKHLQQYL
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| P38023 RNA polymerase sigma factor SigA1 | 7.4e-72 | 43.87 | Show/hide |
Query: SSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELELSDGIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIR
++ K + V++ D +R +LL A EE+EL+ I DLL LER+++EL ++ P+ A+WAAA R+RL G KDKM++SN+R
Subjt: SSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELELSDGIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIR
Query: LVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAE
LV+SIAK Y G++ +DL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ + R+K+ K L E GR P +EEIA
Subjt: LVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAE
Query: AAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVISDPEAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRE
+++++L + + + P SL+ IG D + + I + + E+ ED + K +++DLE VL +L PRER V+R R+G++DGRMKTL+EIG++ ++RE
Subjt: AAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVISDPEAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRE
Query: RVRQIESCAFRKLKNKKRTKHLQQYL
R+RQIE+ A RKL++ R L++Y+
Subjt: RVRQIESCAFRKLKNKKRTKHLQQYL
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| P52322 RNA polymerase sigma factor SigA | 1.5e-64 | 38.52 | Show/hide |
Query: SSRKKRNSVQEVDYS-DPLRYLRATTSTSKLLTASEELELSDGIQDLLKLERLQEE---------------------------------------LAKRF
+S ++R++ ++ Y+ D +R +LL A EE+EL+ I DLLKLER++E+ L K
Subjt: SSRKKRNSVQEVDYS-DPLRYLRATTSTSKLLTASEELELSDGIQDLLKLERLQEE---------------------------------------LAKRF
Query: GNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD
P +W A + ++RL G K+KM++SN+RLV+SIAK Y G++ +DL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++D
Subjt: GNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD
Query: QSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVISDPEAESAEDLLMKQFMKQDLE
QSRTIRLP H+ + R+K+ K L E R P +EEIA +++++L + + + P SL+ IG D + + I + + E+ ED + K +++DLE
Subjt: QSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVISDPEAESAEDLLMKQFMKQDLE
Query: KVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQYL
VL++L PRER V+R R+G++DGRMKTL+EIG+I ++RER+RQIE+ A RKL++ R L++Y+
Subjt: KVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQYL
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| Q9LD95 RNA polymerase sigma factor sigF, chloroplastic | 3.7e-63 | 39.61 | Show/hide |
Query: VRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELELSDGIQDLLKLERLQEELAKRFGNEPTFAQW
VRS RQ ER+A+ RA + +S KK+ Q D D L+ T +LLTA EE EL IQ LLKLE+++ +L + G EPT +W
Subjt: VRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELELSDGIQDLLKLERLQEELAKRFGNEPTFAQW
Query: AAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF
A A G+ L+ ++ G ++K+I +N+RLV+ IAK YQ G+N +DL+QEG GL++ EKF G +F+TYA+WWI+Q++RKS+ SRTIRLP
Subjt: AAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF
Query: HMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVISDPEAESAEDLLMKQFMKQDLEKVLESLKPR
++ +V EARK E P+ EE+A G+S ++L +L + P S+ Q I + D E+ D E+ + KQ M+ + +L L P+
Subjt: HMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVISDPEAESAEDLLMKQFMKQDLEKVLESLKPR
Query: ERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQY
ER++I+ RFG++ G+ ++L EIGEI G+S+ERVRQ+ES A +LK + L Y
Subjt: ERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQY
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT1G08540.1 RNApolymerase sigma subunit 2 | 6.2e-183 | 60.93 | Show/hide |
Query: SCLVPQFKCRPVTFSIQFKISAISITTTPNCSHLHSFLPIAISTCSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSY
SCL+PQFKC P +FSI F+ T C+ H+ + + QC +S SP T + +V +L+LP FDT++DS+ ++R +Y
Subjt: SCLVPQFKCRPVTFSIQFKISAISITTTPNCSHLHSFLPIAISTCSKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSY
Query: ---------LSAVESSLASTLVTSEEATIAAAAAEAVALAKAAVRVANDAVLLANNINSSRTVTESQSARKSDALHFKWDQFMESERADIIGEPVGVNNR
+E+ + TL+TS+EA + AAAAEAVALA+AAV+VA DA L N+ N++ +T S + ++S KWDQF E ERA I+G + V++
Subjt: ---------LSAVESSLASTLVTSEEATIAAAAAEAVALAKAAVRVANDAVLLANNINSSRTVTESQSARKSDALHFKWDQFMESERADIIGEPVGVNNR
Query: PVEGDALEQSTAESDDM----DPTSEDLELLQDELSKIVAVRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSK
+ D + S + + + E++ELL+++ S +AVRS RQTERKARR + EKT + + S+K SS +KKR QEVD++DPLRYLR TTS+SK
Subjt: PVEGDALEQSTAESDDM----DPTSEDLELLQDELSKIVAVRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSK
Query: LLTASEELELSDGIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVR
LLT EE ELS GIQDLLKLERLQ EL +R G +PTFAQWA+AAGVDQK+LR+R++ GT CKDKMIKSNIRLVISIAK YQGAGMNL+DLVQEGCRGLVR
Subjt: LLTASEELELSDGIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVR
Query: GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFN
GAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSR IRLPFHMV+ATYRVKEARKQLYSE G+HP +EEIAEA GLSMKRL +VL++PK PRSLDQKIG N
Subjt: GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFN
Query: LDLKPSEVISDPEAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQYLMS
+LKPSEVI+DPEA ++ED+L+K+FM+QDL+KVL+SL RE+QVIRWRFGMEDGRMKTLQEIGE+MG+SRERVRQIES AFRKLKNKKR HLQQYL++
Subjt: LDLKPSEVISDPEAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQYLMS
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| AT1G64860.1 sigma factor A | 4.2e-38 | 31.39 | Show/hide |
Query: LEQSTAESDDMDPTS-EDLELLQD-------ELSKIVAVRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRN-----SVQEVDYSDPLRYLRATTS
LE+ + DD+ S E + LLQ LS AV S + R+ + T + + + + ++KK N +V +V +R
Subjt: LEQSTAESDDMDPTS-EDLELLQD-------ELSKIVAVRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRN-----SVQEVDYSDPLRYLRATTS
Query: TSKLLTASEELELSDGIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRG
+ +L+ E + LS I+ L+L+ + L R G EP+ Q A + + + L+ L + ++K+ SN+RLV+SIA+ Y G + DLVQ G G
Subjt: TSKLLTASEELELSDGIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRG
Query: LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKI
L+RG EKFD+SKGF+ STY +WWI+Q V ++L D SRT+RLP H+ + ++ A+ +L E G P+ + IAE+ +S K++ + A SLD+
Subjt: LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKI
Query: GFNLDLKPSEV----ISDPEAES-----AEDLLMKQFMKQDLEKVLE-SLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNK
+L+ P E I+D E+ +DL +K+++ K++ +L RE+++IR +G+ D T ++I + +G+SRERVRQ+ A KLK+
Subjt: GFNLDLKPSEV----ISDPEAES-----AEDLLMKQFMKQDLEKVLE-SLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNK
Query: KRTKHLQQYLM
R + ++ ++
Subjt: KRTKHLQQYLM
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| AT2G36990.1 RNApolymerase sigma-subunit F | 2.6e-64 | 39.61 | Show/hide |
Query: VRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELELSDGIQDLLKLERLQEELAKRFGNEPTFAQW
VRS RQ ER+A+ RA + +S KK+ Q D D L+ T +LLTA EE EL IQ LLKLE+++ +L + G EPT +W
Subjt: VRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELELSDGIQDLLKLERLQEELAKRFGNEPTFAQW
Query: AAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF
A A G+ L+ ++ G ++K+I +N+RLV+ IAK YQ G+N +DL+QEG GL++ EKF G +F+TYA+WWI+Q++RKS+ SRTIRLP
Subjt: AAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPF
Query: HMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVISDPEAESAEDLLMKQFMKQDLEKVLESLKPR
++ +V EARK E P+ EE+A G+S ++L +L + P S+ Q I + D E+ D E+ + KQ M+ + +L L P+
Subjt: HMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVISDPEAESAEDLLMKQFMKQDLEKVLESLKPR
Query: ERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQY
ER++I+ RFG++ G+ ++L EIGEI G+S+ERVRQ+ES A +LK + L Y
Subjt: ERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQY
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| AT3G53920.1 RNApolymerase sigma-subunit C | 3.2e-54 | 32.89 | Show/hide |
Query: SEDLELLQDELSKIVAVRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELELSDGIQDLLKLERLQ
S+ EL+ ++ V V S R+ ++KARR+ + G R N++ P +Y + S+ E E+S G++ + +ER++
Subjt: SEDLELLQDELSKIVAVRSNRQTERKARRTRAAEKTGTSVVSLKFSSSSRKKRNSVQEVDYSDPLRYLRATTSTSKLLTASEELELSDGIQDLLKLERLQ
Query: EELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA
+L + G + + WAAAAG+++K L + L+ G +C+D+++KS LV+ +A+ Y+G G+ EDL+Q G G+++GAE+FD ++G+KFSTY +WI+++
Subjt: EELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA
Query: VRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENG-RHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVISDPEAESAEDLLMK
+ +S +R + +P ++ +++ARK L + +G ++ ADEEIA+ G S+K++ + K S+D+K+G K E D ES E+ +M+
Subjt: VRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENG-RHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQKIGFNLDLKPSEVISDPEAESAEDLLMK
Query: QFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQYL
Q ++D+ +LE L+PRE+QV+ R+G++D R K+L+EIG+++ +S+E +R+IE A KL+++ + L+ YL
Subjt: QFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQYL
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| AT5G13730.1 sigma factor 4 | 1.3e-44 | 35.31 | Show/hide |
Query: STSKLLTASEELELSDGIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCR
S S L+ EE++L +++ KLE L + + NE A+ G +++ + L ++K+ + RLV+SIA YQG G+NL+DL+QEG
Subjt: STSKLLTASEELELSDGIQDLLKLERLQEELAKRFGNEPTFAQWAAAAGVDQKTLRKRLNDGTFCKDKMIKSNIRLVISIAKTYQGAGMNLEDLVQEGCR
Query: GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQK
GL+RGAE+FD +G+K STY +WWIKQA+ ++++ +SR ++LP M + T +V EA L + R P+ EEIAE L++ + + ++P SLD+
Subjt: GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVKEARKQLYSENGRHPADEEIAEAAGLSMKRLASVLMAPKAPRSLDQK
Query: IGFNLDLKPSEVISDPEAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQY
N + E++ P+ E+++ ++ MK ++E++L SL RE +V+ FG+ + +EIG+ + +SRERVRQI A +KL+N L+ Y
Subjt: IGFNLDLKPSEVISDPEAESAEDLLMKQFMKQDLEKVLESLKPRERQVIRWRFGMEDGRMKTLQEIGEIMGISRERVRQIESCAFRKLKNKKRTKHLQQY
Query: LMS
S
Subjt: LMS
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