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Sed0009351 (gene) of Chayote v1 genome

Gene IDSed0009351
OrganismSechium edule (Chayote v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG03:41330947..41331417
RNA-Seq ExpressionSed0009351
SyntenySed0009351
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034095.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.0e-4261.15Show/hide
Query:  MQENPLFDQSISSSELS-KDVATPDVMSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDVAESSQTHVIKTNGKGKTLMQEVQPQ
        ++ENP  D+  S SE S ++V  P++MSVM+ D DTS ++R+AELE+KV ML+K VE+++FEI  LK+++E+RD AESS TH +K   KGK +MQE QPQ
Subjt:  MQENPLFDQSISSSELS-KDVATPDVMSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDVAESSQTHVIKTNGKGKTLMQEVQPQ

Query:  HSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPYTKRTDNLRMPIGYQPLKF
        +STSIASLSVQQL +MI N+I+ QYGGP Q++  YSKPYTKR DNLRMP GYQP KF
Subjt:  HSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPYTKRTDNLRMPIGYQPLKF

KAA0041883.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.0e-4159.24Show/hide
Query:  MQENPLFDQSISSSE-LSKDVATPDVMSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDVAESSQTHVIKTNGKGKTLMQEVQPQ
        ++ENP  D+  S SE  S+++A P++MSVM+ D DTS + R+ ELE+KV ML+K VE++++EI SLK+++E+RD AESS  H +K   KGK +MQE QPQ
Subjt:  MQENPLFDQSISSSE-LSKDVATPDVMSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDVAESSQTHVIKTNGKGKTLMQEVQPQ

Query:  HSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPYTKRTDNLRMPIGYQPLKF
        +STSIASLSVQQL +MI N+I+ QYGGP Q++  YSK YTKR DNLRMP GYQP KF
Subjt:  HSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPYTKRTDNLRMPIGYQPLKF

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]1.6e-4261.15Show/hide
Query:  MQENPLFDQSISSSELS-KDVATPDVMSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDVAESSQTHVIKTNGKGKTLMQEVQPQ
        ++ENP  D+  S SE S ++V  P++MSVM+ D DTS ++R+AELE+KV ML+K VE+++FEI  LK+++E+RD AESS TH IK   KGK +MQE QPQ
Subjt:  MQENPLFDQSISSSELS-KDVATPDVMSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDVAESSQTHVIKTNGKGKTLMQEVQPQ

Query:  HSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPYTKRTDNLRMPIGYQPLKF
        +STSIASLSVQQL +MI N+I+ QYGGP Q++  YSKPYTKR DN+RMP GYQP KF
Subjt:  HSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPYTKRTDNLRMPIGYQPLKF

KAA0050518.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.0e-4361.78Show/hide
Query:  MQENPLFDQSISSSELS-KDVATPDVMSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDVAESSQTHVIKTNGKGKTLMQEVQPQ
        ++ENP  D+  S SE S ++V  P++MSVM+ D DTS ++R+AELE+KV ML+K VE+K+FEI  LK+++E+RD AESS TH IK   KGK +MQE QPQ
Subjt:  MQENPLFDQSISSSELS-KDVATPDVMSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDVAESSQTHVIKTNGKGKTLMQEVQPQ

Query:  HSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPYTKRTDNLRMPIGYQPLKF
        +STSIASLSVQQL +MI N+I+ QYGGP Q++  YSKPYTKR DN+RMP GYQP KF
Subjt:  HSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPYTKRTDNLRMPIGYQPLKF

KAA0051994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.4e-4361.78Show/hide
Query:  MQENPLFDQSISSSELSKDVA-TPDVMSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDVAESSQTHVIKTNGKGKTLMQEVQPQ
        ++ENP  D+  S SE S + A  P++MSVM+ D DTS ++R+AELE+KV ML+K VE+++FEI SLK+++E+RD  ESS TH+IK   KGK +MQE QPQ
Subjt:  MQENPLFDQSISSSELSKDVA-TPDVMSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDVAESSQTHVIKTNGKGKTLMQEVQPQ

Query:  HSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPYTKRTDNLRMPIGYQPLKF
        +STSIASLSVQQL++MI N+I+ QYGGP Q++  YSKPYTKR DNLRMP GYQP KF
Subjt:  HSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPYTKRTDNLRMPIGYQPLKF

TrEMBL top hitse value%identityAlignment
A0A5A7SY17 Ty3-gypsy retrotransposon protein9.9e-4361.15Show/hide
Query:  MQENPLFDQSISSSELS-KDVATPDVMSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDVAESSQTHVIKTNGKGKTLMQEVQPQ
        ++ENP  D+  S SE S ++V  P++MSVM+ D DTS ++R+AELE+KV ML+K VE+++FEI  LK+++E+RD AESS TH +K   KGK +MQE QPQ
Subjt:  MQENPLFDQSISSSELS-KDVATPDVMSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDVAESSQTHVIKTNGKGKTLMQEVQPQ

Query:  HSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPYTKRTDNLRMPIGYQPLKF
        +STSIASLSVQQL +MI N+I+ QYGGP Q++  YSKPYTKR DNLRMP GYQP KF
Subjt:  HSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPYTKRTDNLRMPIGYQPLKF

A0A5A7TZU9 Ribonuclease H7.6e-4361.15Show/hide
Query:  MQENPLFDQSISSSELS-KDVATPDVMSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDVAESSQTHVIKTNGKGKTLMQEVQPQ
        ++ENP  D+  S SE S ++V  P++MSVM+ D DTS ++R+AELE+KV ML+K VE+++FEI  LK+++E+RD AESS TH IK   KGK +MQE QPQ
Subjt:  MQENPLFDQSISSSELS-KDVATPDVMSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDVAESSQTHVIKTNGKGKTLMQEVQPQ

Query:  HSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPYTKRTDNLRMPIGYQPLKF
        +STSIASLSVQQL +MI N+I+ QYGGP Q++  YSKPYTKR DN+RMP GYQP KF
Subjt:  HSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPYTKRTDNLRMPIGYQPLKF

A0A5A7U5H1 Ty3-gypsy retrotransposon protein3.4e-4361.78Show/hide
Query:  MQENPLFDQSISSSELS-KDVATPDVMSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDVAESSQTHVIKTNGKGKTLMQEVQPQ
        ++ENP  D+  S SE S ++V  P++MSVM+ D DTS ++R+AELE+KV ML+K VE+K+FEI  LK+++E+RD AESS TH IK   KGK +MQE QPQ
Subjt:  MQENPLFDQSISSSELS-KDVATPDVMSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDVAESSQTHVIKTNGKGKTLMQEVQPQ

Query:  HSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPYTKRTDNLRMPIGYQPLKF
        +STSIASLSVQQL +MI N+I+ QYGGP Q++  YSKPYTKR DN+RMP GYQP KF
Subjt:  HSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPYTKRTDNLRMPIGYQPLKF

A0A5A7U9H0 Ty3-gypsy retrotransposon protein2.6e-4361.78Show/hide
Query:  MQENPLFDQSISSSELSKDVA-TPDVMSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDVAESSQTHVIKTNGKGKTLMQEVQPQ
        ++ENP  D+  S SE S + A  P++MSVM+ D DTS ++R+AELE+KV ML+K VE+++FEI SLK+++E+RD  ESS TH+IK   KGK +MQE QPQ
Subjt:  MQENPLFDQSISSSELSKDVA-TPDVMSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDVAESSQTHVIKTNGKGKTLMQEVQPQ

Query:  HSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPYTKRTDNLRMPIGYQPLKF
        +STSIASLSVQQL++MI N+I+ QYGGP Q++  YSKPYTKR DNLRMP GYQP KF
Subjt:  HSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPYTKRTDNLRMPIGYQPLKF

A0A5D3C4W1 Ty3-gypsy retrotransposon protein2.4e-4159.24Show/hide
Query:  MQENPLFDQSISSSE-LSKDVATPDVMSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDVAESSQTHVIKTNGKGKTLMQEVQPQ
        ++ENP  D+  S SE  S+++A P++MSVM+ D DTS + R+ ELE+KV ML+K VE++++EI SLK+++E+RD AESS  H +K   KGK +MQE QPQ
Subjt:  MQENPLFDQSISSSE-LSKDVATPDVMSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDVAESSQTHVIKTNGKGKTLMQEVQPQ

Query:  HSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPYTKRTDNLRMPIGYQPLKF
        +STSIASLSVQQL +MI N+I+ QYGGP Q++  YSK YTKR DNLRMP GYQP KF
Subjt:  HSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPYTKRTDNLRMPIGYQPLKF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGAAAATCCTCTATTTGATCAATCCATCTCATCATCTGAACTATCAAAGGATGTAGCTACTCCTGATGTTATGTCTGTGATGATGGCTGATGCAGATACATCAGG
CGATGAGAGAATAGCGGAGCTTGAAAGGAAAGTAGAGATGTTGCTGAAAACAGTTGAGGATAAAGAGTTTGAAATCACTTCTCTAAAGCATTACCTTGAGACTCGGGATG
TTGCCGAATCTAGTCAAACGCATGTTATAAAGACTAACGGAAAAGGGAAGACTCTTATGCAAGAAGTTCAACCCCAACACTCAACTTCTATCGCTTCGTTATCCGTCCAA
CAACTTAATGATATGATCACAAACACCATTAGAGCTCAATATGGCGGGCCTCCTCAAAGTTATCTCACATATTCCAAACCGTATACCAAAAGAACTGACAATTTAAGAAT
GCCAATCGGGTATCAACCTCTAAAATTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAGAAAATCCTCTATTTGATCAATCCATCTCATCATCTGAACTATCAAAGGATGTAGCTACTCCTGATGTTATGTCTGTGATGATGGCTGATGCAGATACATCAGG
CGATGAGAGAATAGCGGAGCTTGAAAGGAAAGTAGAGATGTTGCTGAAAACAGTTGAGGATAAAGAGTTTGAAATCACTTCTCTAAAGCATTACCTTGAGACTCGGGATG
TTGCCGAATCTAGTCAAACGCATGTTATAAAGACTAACGGAAAAGGGAAGACTCTTATGCAAGAAGTTCAACCCCAACACTCAACTTCTATCGCTTCGTTATCCGTCCAA
CAACTTAATGATATGATCACAAACACCATTAGAGCTCAATATGGCGGGCCTCCTCAAAGTTATCTCACATATTCCAAACCGTATACCAAAAGAACTGACAATTTAAGAAT
GCCAATCGGGTATCAACCTCTAAAATTTTAG
Protein sequenceShow/hide protein sequence
MQENPLFDQSISSSELSKDVATPDVMSVMMADADTSGDERIAELERKVEMLLKTVEDKEFEITSLKHYLETRDVAESSQTHVIKTNGKGKTLMQEVQPQHSTSIASLSVQ
QLNDMITNTIRAQYGGPPQSYLTYSKPYTKRTDNLRMPIGYQPLKF