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Sed0009361 (gene) of Chayote v1 genome

Gene IDSed0009361
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG03:41042165..41043753
RNA-Seq ExpressionSed0009361
SyntenySed0009361
Gene Ontology termsNA
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON56648.1 Zinc knuckle CX2CX4HX4C [Trema orientale]5.2e-1429.52Show/hide
Query:  ENIDLCVMAKILTSKRVHFETFKLVMKSVWKVHN-LTKFEIAGDNIFFIQFRTVLEKSWV---------EEVDHDERDGGIGPI----------------
        + +DLC++ K+L ++ V+ E  + V+  VW + N  T  +++  N+F   F    ++ WV          ++    +  G+G +                
Subjt:  ENIDLCVMAKILTSKRVHFETFKLVMKSVWKVHN-LTKFEIAGDNIFFIQFRTVLEKSWV---------EEVDHDERDGGIGPI----------------

Query:  -------LQIRVVLNVTYPFSRGIKILTKE-GTEVCCPLQYEKLPDFFYFYGLLGHKRRECSNLNASLPADGRNSPF--GDFLRA---SLRKRFHLPIDE
               +++RV ++VT P SRGI+ L ++ G EV   L+YE LPDF YF G++GHK RECS     +  + R   F  G +LRA    +R R+     E
Subjt:  -------LQIRVVLNVTYPFSRGIKILTKE-GTEVCCPLQYEKLPDFFYFYGLLGHKRRECSNLNASLPADGRNSPF--GDFLRA---SLRKRFHLPIDE

Query:  IDHNTPPPSA
         + N P P+A
Subjt:  IDHNTPPPSA

TXG51459.1 hypothetical protein EZV62_023983 [Acer yangbiense]3.1e-1428.5Show/hide
Query:  IDLCVMAKILTSKRVHFETFKLVMKSVWKVHNLTKFEIAGDNIFFIQFRTVLEKS-------W---------------VEEVDHDERDGGIGPILQIRVV
        +DLC++ KIL+SKRV+ E FK +++ +W      + E  G NIF   F   +E++       W               V ++  + +D   G  ++++V 
Subjt:  IDLCVMAKILTSKRVHFETFKLVMKSVWKVHNLTKFEIAGDNIFFIQFRTVLEKS-------W---------------VEEVDHDERDGGIGPILQIRVV

Query:  LNVTYPFSRGIKI-LTKEGTEVCCPLQYEKLPDFFYFYGLLGHKRRECSNLNASLPA-DGRNSPFGDFLRASLRKRFHLPID-EIDHNTPPPSANFDGRS
        ++++ P  R +++ L K    V   L+YE+LP F Y  G +GH  + CS+  A + A  G ++ +G ++RAS+  R  + ID +I  ++   S   + RS
Subjt:  LNVTYPFSRGIKI-LTKEGTEVCCPLQYEKLPDFFYFYGLLGHKRRECSNLNASLPA-DGRNSPFGDFLRASLRKRFHLPID-EIDHNTPPPSANFDGRS

TXG73181.1 hypothetical protein EZV62_001760 [Acer yangbiense]2.3e-1429.57Show/hide
Query:  ENIDLCVMAKILTSKRVHFETFKLVMKSVWKVHNLTKFEIAGDNIFFIQFRT--------------------VLEK---SWVE-------EVDHDERDGG
        E++D C++ K+L+ KRV+ + FK V++ +W      + E+ G+N+F   F                      VLEK    W+        E+  + RD  
Subjt:  ENIDLCVMAKILTSKRVHFETFKLVMKSVWKVHNLTKFEIAGDNIFFIQFRT--------------------VLEK---SWVE-------EVDHDERDGG

Query:  IGPILQIRVVLNVTYPFSRGIKI-LTKEGTEVCCPLQYEKLPDFFYFYGLLGHKRRECSNLNASLPADGRNSP-FGDFLRASLRKR
         G  L+++V ++++ P  R +++ L + G  V   L+YE+LP+F Y  G +GH   ECS + A   A   N+P FG ++RA+L ++
Subjt:  IGPILQIRVVLNVTYPFSRGIKI-LTKEGTEVCCPLQYEKLPDFFYFYGLLGHKRRECSNLNASLPADGRNSP-FGDFLRASLRKR

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]4.4e-2932.56Show/hide
Query:  MDDLMSRLQSFELSSIEETTIMVGESSPDLVAVENIDLCVMAKILTSKRVHFETFKLVMKSVWKVHNLTKFEIAGDNIFFIQFRTVLEKS----------
        MD++    + F+ ++ E  T+ +    P L A +N+ LCV+AK+ TSKR+  E  + VMKSVW+VHN T+FE  G NI+ I F+++ EKS          
Subjt:  MDDLMSRLQSFELSSIEETTIMVGESSPDLVAVENIDLCVMAKILTSKRVHFETFKLVMKSVWKVHNLTKFEIAGDNIFFIQFRTVLEKS----------

Query:  --------------------------W-------------------------VEEVDHDERDGGIGPILQIRVVLNVTYPFSRGIKILTKEGTEVCCPLQ
                                  W                         VEE++ D  DG  GP +++RV ++V+ P  RGIK+   +G ++ CPL+
Subjt:  --------------------------W-------------------------VEEVDHDERDGGIGPILQIRVVLNVTYPFSRGIKILTKEGTEVCCPLQ

Query:  YEKLPDFFYFYGLLGHKRRECSNLNASLPADGRNSP--FGDFLRASLRKRFHLPIDEIDHNTPPPSANFDGRSAHYHGRGNRGIGQGGGR--LRRDLMKW
        YEKLPDF Y  G +GH  REC   +  +     NSP  +GD+LRA+L K+       + H    P      R   + GRG++  G  GGR   RR    W
Subjt:  YEKLPDFFYFYGLLGHKRRECSNLNASLPADGRNSP--FGDFLRASLRKRFHLPIDEIDHNTPPPSANFDGRSAHYHGRGNRGIGQGGGR--LRRDLMKW

Query:  R
        R
Subjt:  R

XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]1.1e-2233.18Show/hide
Query:  MDDLMSRLQSFELSSIEETTIMVGESSPDLVAVENIDLCVMAKILTSKRVHFETFKLVMKSVWKVHNLTKFEIAGDNIFFIQFRTVLEK-------SW--
        MDD+    ++F L   EE TI++    P ++ V+NI LC + K+  SKR+  E F  VMK VWK+HN T+ E AG NI+ I F+T+ EK        W  
Subjt:  MDDLMSRLQSFELSSIEETTIMVGESSPDLVAVENIDLCVMAKILTSKRVHFETFKLVMKSVWKVHNLTKFEIAGDNIFFIQFRTVLEK-------SW--

Query:  ----------------------------------------------------VEEVDHDERDGGIGPILQIRVVLNVTYPFSRGIKILTKEGTEVCCPLQ
                                                            VEEVD       + P L +RV +NV  P  RG+K+ T +G ++ CPL+
Subjt:  ----------------------------------------------------VEEVDHDERDGGIGPILQIRVVLNVTYPFSRGIKILTKEGTEVCCPLQ

Query:  YEKLPDFFYFYGLLGHKRRE
        YE+LPDF Y  G +GH  RE
Subjt:  YEKLPDFFYFYGLLGHKRRE

TrEMBL top hitse value%identityAlignment
A0A5C7H421 CCHC-type domain-containing protein1.5e-1428.5Show/hide
Query:  IDLCVMAKILTSKRVHFETFKLVMKSVWKVHNLTKFEIAGDNIFFIQFRTVLEKS-------W---------------VEEVDHDERDGGIGPILQIRVV
        +DLC++ KIL+SKRV+ E FK +++ +W      + E  G NIF   F   +E++       W               V ++  + +D   G  ++++V 
Subjt:  IDLCVMAKILTSKRVHFETFKLVMKSVWKVHNLTKFEIAGDNIFFIQFRTVLEKS-------W---------------VEEVDHDERDGGIGPILQIRVV

Query:  LNVTYPFSRGIKI-LTKEGTEVCCPLQYEKLPDFFYFYGLLGHKRRECSNLNASLPA-DGRNSPFGDFLRASLRKRFHLPID-EIDHNTPPPSANFDGRS
        ++++ P  R +++ L K    V   L+YE+LP F Y  G +GH  + CS+  A + A  G ++ +G ++RAS+  R  + ID +I  ++   S   + RS
Subjt:  LNVTYPFSRGIKI-LTKEGTEVCCPLQYEKLPDFFYFYGLLGHKRRECSNLNASLPA-DGRNSPFGDFLRASLRKRFHLPID-EIDHNTPPPSANFDGRS

A0A5C7I3H2 CCHC-type domain-containing protein2.5e-1429.45Show/hide
Query:  VENIDLCVMAKILTSKRVHFETFKLVMKSVWKVHNLTKFEIAGDNIFFIQFRTVLEKSWVEEVDHDERDGGIGPILQIRVVLNVTYPFSRGIKI-LTKEG
        V N+D C++ K+L+ K+V+ E FK +++ +W      + E  G NIF        +   V E+  + +D   G  ++++V++ ++ P  R +++ L K  
Subjt:  VENIDLCVMAKILTSKRVHFETFKLVMKSVWKVHNLTKFEIAGDNIFFIQFRTVLEKSWVEEVDHDERDGGIGPILQIRVVLNVTYPFSRGIKI-LTKEG

Query:  TEVCCPLQYEKLPDFFYFYGLLGHKRRECSNLNASLPA-DGRNSPFGDFLRASL--RKRFHLP
          V   L+YE+LP F Y  G++GH  ++C +  A   A  G  + FG ++RA +  R++F  P
Subjt:  TEVCCPLQYEKLPDFFYFYGLLGHKRRECSNLNASLPA-DGRNSPFGDFLRASL--RKRFHLP

A0A5C7IV71 CCHC-type domain-containing protein1.1e-1429.57Show/hide
Query:  ENIDLCVMAKILTSKRVHFETFKLVMKSVWKVHNLTKFEIAGDNIFFIQFRT--------------------VLEK---SWVE-------EVDHDERDGG
        E++D C++ K+L+ KRV+ + FK V++ +W      + E+ G+N+F   F                      VLEK    W+        E+  + RD  
Subjt:  ENIDLCVMAKILTSKRVHFETFKLVMKSVWKVHNLTKFEIAGDNIFFIQFRT--------------------VLEK---SWVE-------EVDHDERDGG

Query:  IGPILQIRVVLNVTYPFSRGIKI-LTKEGTEVCCPLQYEKLPDFFYFYGLLGHKRRECSNLNASLPADGRNSP-FGDFLRASLRKR
         G  L+++V ++++ P  R +++ L + G  V   L+YE+LP+F Y  G +GH   ECS + A   A   N+P FG ++RA+L ++
Subjt:  IGPILQIRVVLNVTYPFSRGIKI-LTKEGTEVCCPLQYEKLPDFFYFYGLLGHKRRECSNLNASLPADGRNSP-FGDFLRASLRKR

A0A6J1D765 uncharacterized protein LOC1110179022.1e-2932.56Show/hide
Query:  MDDLMSRLQSFELSSIEETTIMVGESSPDLVAVENIDLCVMAKILTSKRVHFETFKLVMKSVWKVHNLTKFEIAGDNIFFIQFRTVLEKS----------
        MD++    + F+ ++ E  T+ +    P L A +N+ LCV+AK+ TSKR+  E  + VMKSVW+VHN T+FE  G NI+ I F+++ EKS          
Subjt:  MDDLMSRLQSFELSSIEETTIMVGESSPDLVAVENIDLCVMAKILTSKRVHFETFKLVMKSVWKVHNLTKFEIAGDNIFFIQFRTVLEKS----------

Query:  --------------------------W-------------------------VEEVDHDERDGGIGPILQIRVVLNVTYPFSRGIKILTKEGTEVCCPLQ
                                  W                         VEE++ D  DG  GP +++RV ++V+ P  RGIK+   +G ++ CPL+
Subjt:  --------------------------W-------------------------VEEVDHDERDGGIGPILQIRVVLNVTYPFSRGIKILTKEGTEVCCPLQ

Query:  YEKLPDFFYFYGLLGHKRRECSNLNASLPADGRNSP--FGDFLRASLRKRFHLPIDEIDHNTPPPSANFDGRSAHYHGRGNRGIGQGGGR--LRRDLMKW
        YEKLPDF Y  G +GH  REC   +  +     NSP  +GD+LRA+L K+       + H    P      R   + GRG++  G  GGR   RR    W
Subjt:  YEKLPDFFYFYGLLGHKRRECSNLNASLPADGRNSP--FGDFLRASLRKRFHLPIDEIDHNTPPPSANFDGRSAHYHGRGNRGIGQGGGR--LRRDLMKW

Query:  R
        R
Subjt:  R

A0A6J1DVS4 uncharacterized protein LOC1110235555.1e-2333.18Show/hide
Query:  MDDLMSRLQSFELSSIEETTIMVGESSPDLVAVENIDLCVMAKILTSKRVHFETFKLVMKSVWKVHNLTKFEIAGDNIFFIQFRTVLEK-------SW--
        MDD+    ++F L   EE TI++    P ++ V+NI LC + K+  SKR+  E F  VMK VWK+HN T+ E AG NI+ I F+T+ EK        W  
Subjt:  MDDLMSRLQSFELSSIEETTIMVGESSPDLVAVENIDLCVMAKILTSKRVHFETFKLVMKSVWKVHNLTKFEIAGDNIFFIQFRTVLEK-------SW--

Query:  ----------------------------------------------------VEEVDHDERDGGIGPILQIRVVLNVTYPFSRGIKILTKEGTEVCCPLQ
                                                            VEEVD       + P L +RV +NV  P  RG+K+ T +G ++ CPL+
Subjt:  ----------------------------------------------------VEEVDHDERDGGIGPILQIRVVLNVTYPFSRGIKILTKEGTEVCCPLQ

Query:  YEKLPDFFYFYGLLGHKRRE
        YE+LPDF Y  G +GH  RE
Subjt:  YEKLPDFFYFYGLLGHKRRE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACTCATATACCATGGACGATCTTATGAGTCGATTACAATCTTTCGAACTCTCGTCCATTGAAGAAACAACGATTATGGTTGGTGAATCGTCCCCTGATTTGGTGGC
AGTGGAGAATATTGATTTATGCGTTATGGCCAAAATCCTCACCTCCAAAAGAGTCCATTTTGAGACTTTTAAATTGGTGATGAAATCTGTCTGGAAGGTCCACAACTTGA
CTAAGTTTGAAATTGCTGGGGATAACATTTTCTTCATACAATTTCGGACAGTTTTGGAAAAATCATGGGTTGAAGAGGTAGACCATGATGAGCGTGATGGCGGAATTGGT
CCGATTCTTCAGATCCGTGTGGTGCTGAATGTTACCTATCCTTTTTCTCGTGGAATCAAAATTTTAACAAAGGAAGGCACGGAAGTGTGTTGTCCATTACAATATGAAAA
ACTCCCTGATTTTTTCTACTTTTATGGATTATTAGGCCATAAGCGACGTGAATGTTCGAATTTGAATGCTTCATTGCCTGCAGATGGCCGAAACTCTCCATTTGGGGATT
TTCTCAGGGCGTCTCTCCGAAAAAGATTTCATCTCCCTATTGATGAAATAGACCATAATACACCTCCGCCTTCGGCGAATTTTGATGGACGCTCTGCACATTATCATGGT
CGGGGAAATCGAGGCATTGGTCAAGGAGGTGGGCGGCTACGACGTGATCTGATGAAATGGAGGCAACATTCGATGGCGCCTGGGGAATATTCTTCCACTGATTCTTCTGG
TCATTTGAATTCAATAGAGGTTGATTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCACTCATATACCATGGACGATCTTATGAGTCGATTACAATCTTTCGAACTCTCGTCCATTGAAGAAACAACGATTATGGTTGGTGAATCGTCCCCTGATTTGGTGGC
AGTGGAGAATATTGATTTATGCGTTATGGCCAAAATCCTCACCTCCAAAAGAGTCCATTTTGAGACTTTTAAATTGGTGATGAAATCTGTCTGGAAGGTCCACAACTTGA
CTAAGTTTGAAATTGCTGGGGATAACATTTTCTTCATACAATTTCGGACAGTTTTGGAAAAATCATGGGTTGAAGAGGTAGACCATGATGAGCGTGATGGCGGAATTGGT
CCGATTCTTCAGATCCGTGTGGTGCTGAATGTTACCTATCCTTTTTCTCGTGGAATCAAAATTTTAACAAAGGAAGGCACGGAAGTGTGTTGTCCATTACAATATGAAAA
ACTCCCTGATTTTTTCTACTTTTATGGATTATTAGGCCATAAGCGACGTGAATGTTCGAATTTGAATGCTTCATTGCCTGCAGATGGCCGAAACTCTCCATTTGGGGATT
TTCTCAGGGCGTCTCTCCGAAAAAGATTTCATCTCCCTATTGATGAAATAGACCATAATACACCTCCGCCTTCGGCGAATTTTGATGGACGCTCTGCACATTATCATGGT
CGGGGAAATCGAGGCATTGGTCAAGGAGGTGGGCGGCTACGACGTGATCTGATGAAATGGAGGCAACATTCGATGGCGCCTGGGGAATATTCTTCCACTGATTCTTCTGG
TCATTTGAATTCAATAGAGGTTGATTCTTAA
Protein sequenceShow/hide protein sequence
MHSYTMDDLMSRLQSFELSSIEETTIMVGESSPDLVAVENIDLCVMAKILTSKRVHFETFKLVMKSVWKVHNLTKFEIAGDNIFFIQFRTVLEKSWVEEVDHDERDGGIG
PILQIRVVLNVTYPFSRGIKILTKEGTEVCCPLQYEKLPDFFYFYGLLGHKRRECSNLNASLPADGRNSPFGDFLRASLRKRFHLPIDEIDHNTPPPSANFDGRSAHYHG
RGNRGIGQGGGRLRRDLMKWRQHSMAPGEYSSTDSSGHLNSIEVDS