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Sed0009381 (gene) of Chayote v1 genome

Gene IDSed0009381
OrganismSechium edule (Chayote v1)
Descriptionprotein ROOT PRIMORDIUM DEFECTIVE 1
Genome locationLG08:10171721..10172466
RNA-Seq ExpressionSed0009381
SyntenySed0009381
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR021099 - Plant organelle RNA recognition domain
IPR045040 - PORR family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7033463.1 Protein ROOT PRIMORDIUM DEFECTIVE 1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-5177.42Show/hide
Query:  MLPLRAIYKVLRELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKV
        MLPLRAIYKV RELG PDNFED VISK SHIFQLCDA+EPNTHFLKLVD  P+NHFRAAV+EWRVT+CC+  Y+VDETEI+YSFKH+YPPGMRL+K FK 
Subjt:  MLPLRAIYKVLRELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKV

Query:  KVKEWQMCPYTGPYAENLRVTSMG
        KVKEWQ CPYTGPY   L     G
Subjt:  KVKEWQMCPYTGPYAENLRVTSMG

XP_022157354.1 LOW QUALITY PROTEIN: protein ROOT PRIMORDIUM DEFECTIVE 1 [Momordica charantia]2.9e-5182.46Show/hide
Query:  MLPLRAIYKVLRELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKV
        MLPLRAIYKV RELG PD+FEDSVI K+SHIFQLCDAHEPNTHFLKLVD  P+NHFRAAVE+WRVTECC++D  +DETEI+YSFKH+ PPGMRL+KNFK 
Subjt:  MLPLRAIYKVLRELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKV

Query:  KVKEWQMCPYTGPY
        KVKEWQ CPYTGPY
Subjt:  KVKEWQMCPYTGPY

XP_022960573.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita moschata]8.4e-5180.51Show/hide
Query:  MLPLRAIYKVLRELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKV
        MLPLRAIYKV RELG PDNFED VISK SHIFQLCDAHEPNTHFLKLVD  P+NHFRAAV+EWRVT+CC+    VDETEI+YSFKH+YPPGMRL+K FK 
Subjt:  MLPLRAIYKVLRELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKV

Query:  KVKEWQMCPYTGPYAENL
        KVKEWQ CPYTGPY   L
Subjt:  KVKEWQMCPYTGPYAENL

XP_023516230.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita pepo subsp. pepo]1.7e-5177.42Show/hide
Query:  MLPLRAIYKVLRELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKV
        MLPLRAIYKV RELG PDNFED VISK SHIFQLCDA+EPNTHFLKLVD  P+NHFRAAV+EWRVT+CC+  Y+VDETEI+YSFKH+YPPGMRL+K FK 
Subjt:  MLPLRAIYKVLRELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKV

Query:  KVKEWQMCPYTGPYAENLRVTSMG
        KVKEWQ CPYTGPY   L     G
Subjt:  KVKEWQMCPYTGPYAENLRVTSMG

XP_038879589.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Benincasa hispida]5.2e-5382.2Show/hide
Query:  MLPLRAIYKVLRELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKV
        M+PLRAIYKV RELG PDNFEDSVISKYSHIFQLCDAHEPNTHFLKL D  P++HFRAAVEEWRVT+CC++D +VDETEIQYSFKH+YPPGMRL+KNFK 
Subjt:  MLPLRAIYKVLRELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKV

Query:  KVKEWQMCPYTGPYAENL
        KVKEWQ CPY GPY   L
Subjt:  KVKEWQMCPYTGPYAENL

TrEMBL top hitse value%identityAlignment
A0A1S3BQP0 protein ROOT PRIMORDIUM DEFECTIVE 11.5e-5080.7Show/hide
Query:  MLPLRAIYKVLRELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKV
        M+PLRAIYKV RELG PD+FED+VISKYSH+FQLCDAHEPNTH+LKLVD  P+N FRAAVEEWRV +CC +D  VDETEIQYSFKH+YPPGMRL+K FK 
Subjt:  MLPLRAIYKVLRELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKV

Query:  KVKEWQMCPYTGPY
        KVKEWQ CPYTGPY
Subjt:  KVKEWQMCPYTGPY

A0A5A7UQD0 Protein ROOT PRIMORDIUM DEFECTIVE 11.5e-5080.7Show/hide
Query:  MLPLRAIYKVLRELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKV
        M+PLRAIYKV RELG PD+FED+VISKYSH+FQLCDAHEPNTH+LKLVD  P+N FRAAVEEWRV +CC +D  VDETEIQYSFKH+YPPGMRL+K FK 
Subjt:  MLPLRAIYKVLRELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKV

Query:  KVKEWQMCPYTGPY
        KVKEWQ CPYTGPY
Subjt:  KVKEWQMCPYTGPY

A0A5D3CI38 Protein ROOT PRIMORDIUM DEFECTIVE 11.5e-5080.7Show/hide
Query:  MLPLRAIYKVLRELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKV
        M+PLRAIYKV RELG PD+FED+VISKYSH+FQLCDAHEPNTH+LKLVD  P+N FRAAVEEWRV +CC +D  VDETEIQYSFKH+YPPGMRL+K FK 
Subjt:  MLPLRAIYKVLRELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKV

Query:  KVKEWQMCPYTGPY
        KVKEWQ CPYTGPY
Subjt:  KVKEWQMCPYTGPY

A0A6J1DW95 LOW QUALITY PROTEIN: protein ROOT PRIMORDIUM DEFECTIVE 11.4e-5182.46Show/hide
Query:  MLPLRAIYKVLRELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKV
        MLPLRAIYKV RELG PD+FEDSVI K+SHIFQLCDAHEPNTHFLKLVD  P+NHFRAAVE+WRVTECC++D  +DETEI+YSFKH+ PPGMRL+KNFK 
Subjt:  MLPLRAIYKVLRELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKV

Query:  KVKEWQMCPYTGPY
        KVKEWQ CPYTGPY
Subjt:  KVKEWQMCPYTGPY

A0A6J1H9C9 protein ROOT PRIMORDIUM DEFECTIVE 14.1e-5180.51Show/hide
Query:  MLPLRAIYKVLRELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKV
        MLPLRAIYKV RELG PDNFED VISK SHIFQLCDAHEPNTHFLKLVD  P+NHFRAAV+EWRVT+CC+    VDETEI+YSFKH+YPPGMRL+K FK 
Subjt:  MLPLRAIYKVLRELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKV

Query:  KVKEWQMCPYTGPYAENL
        KVKEWQ CPYTGPY   L
Subjt:  KVKEWQMCPYTGPYAENL

SwissProt top hitse value%identityAlignment
Q689D6 Protein ROOT PRIMORDIUM DEFECTIVE 15.5e-1335.58Show/hide
Query:  ELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKVKVKEWQMCPYTG
        E G P++FE SVI K+   F+L D  E    ++++V++ P N    A+E  RV E   +   +D  ++++SF  N+PPG ++ K F++ V +WQ  PY  
Subjt:  ELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKVKVKEWQMCPYTG

Query:  PYAE
        PY +
Subjt:  PYAE

Arabidopsis top hitse value%identityAlignment
AT1G06440.1 Ubiquitin carboxyl-terminal hydrolase family protein4.9e-4164.66Show/hide
Query:  LPLRAIYKVLRELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKN-HFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKV
        +PLRA++KV RELG PD+FEDSVISK  H+F+L D HE NTH L+LV +  K   F AAVE+WRV EC ++D +VD TEIQ+SFKH+YPPGMRL K FK 
Subjt:  LPLRAIYKVLRELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKN-HFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKV

Query:  KVKEWQMCPYTGPYAE
        KVKEWQ  PY GPY +
Subjt:  KVKEWQMCPYTGPYAE

AT3G58520.1 Ubiquitin carboxyl-terminal hydrolase family protein1.1e-0528.93Show/hide
Query:  LRAIYKVLRELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQY----------SFKHNYPPGMR
        LR+++ +  +LG PDN+E +++ KY   F    A   N   LKLV    +  F A  +         +D +V   E +Y          +F  ++P G  
Subjt:  LRAIYKVLRELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQY----------SFKHNYPPGMR

Query:  LQKNFKVKVKEWQMCPYTGPY
         QK  K  + E+Q  PY  PY
Subjt:  LQKNFKVKVKEWQMCPYTGPY

AT4G33495.1 Ubiquitin carboxyl-terminal hydrolase family protein3.9e-1435.58Show/hide
Query:  ELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKVKVKEWQMCPYTG
        E G P++FE SVI K+   F+L D  E    ++++V++ P N    A+E  RV E   +   +D  ++++SF  N+PPG ++ K F++ V +WQ  PY  
Subjt:  ELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKVKVKEWQMCPYTG

Query:  PYAE
        PY +
Subjt:  PYAE

AT5G45790.1 Ubiquitin carboxyl-terminal hydrolase family protein6.0e-1536.84Show/hide
Query:  MLPLRAIYKVLRELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKV
        +L + A+  + +ELG P++F DS+++KYS  F+L D        L+LVD+  ++   A VEEWR  E   K  +  ET   Y+F  + P G +++K F+ 
Subjt:  MLPLRAIYKVLRELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKV

Query:  KVKEWQMCPYTGPY
        ++K WQ  PY  PY
Subjt:  KVKEWQMCPYTGPY

AT5G45790.2 Ubiquitin carboxyl-terminal hydrolase family protein6.0e-1536.84Show/hide
Query:  MLPLRAIYKVLRELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKV
        +L + A+  + +ELG P++F DS+++KYS  F+L D        L+LVD+  ++   A VEEWR  E   K  +  ET   Y+F  + P G +++K F+ 
Subjt:  MLPLRAIYKVLRELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKV

Query:  KVKEWQMCPYTGPY
        ++K WQ  PY  PY
Subjt:  KVKEWQMCPYTGPY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTACCACTGCGTGCAATTTACAAGGTTTTGAGGGAGCTTGGCCACCCTGACAATTTTGAGGACTCTGTGATATCGAAATATTCTCATATTTTTCAGCTCTGTGATGC
TCATGAACCAAATACTCATTTTTTGAAGTTGGTTGATCAGACTCCAAAAAATCATTTCAGAGCAGCTGTTGAGGAATGGAGAGTTACCGAGTGTTGTAGAAAAGACTACA
ATGTTGATGAGACAGAAATCCAGTATAGTTTTAAACATAACTACCCTCCAGGAATGCGATTGCAAAAGAACTTCAAGGTCAAGGTCAAGGAATGGCAAATGTGTCCATAT
ACTGGACCATATGCTGAAAATTTGAGAGTAACAAGCATGGGAACACAAAAGGCAAATCAAATTCAGAACGAAGATGGTGGCTTGCCTCCAGATAACAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTACCACTGCGTGCAATTTACAAGGTTTTGAGGGAGCTTGGCCACCCTGACAATTTTGAGGACTCTGTGATATCGAAATATTCTCATATTTTTCAGCTCTGTGATGC
TCATGAACCAAATACTCATTTTTTGAAGTTGGTTGATCAGACTCCAAAAAATCATTTCAGAGCAGCTGTTGAGGAATGGAGAGTTACCGAGTGTTGTAGAAAAGACTACA
ATGTTGATGAGACAGAAATCCAGTATAGTTTTAAACATAACTACCCTCCAGGAATGCGATTGCAAAAGAACTTCAAGGTCAAGGTCAAGGAATGGCAAATGTGTCCATAT
ACTGGACCATATGCTGAAAATTTGAGAGTAACAAGCATGGGAACACAAAAGGCAAATCAAATTCAGAACGAAGATGGTGGCTTGCCTCCAGATAACAAGTGA
Protein sequenceShow/hide protein sequence
MLPLRAIYKVLRELGHPDNFEDSVISKYSHIFQLCDAHEPNTHFLKLVDQTPKNHFRAAVEEWRVTECCRKDYNVDETEIQYSFKHNYPPGMRLQKNFKVKVKEWQMCPY
TGPYAENLRVTSMGTQKANQIQNEDGGLPPDNK