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Sed0009483 (gene) of Chayote v1 genome

Gene IDSed0009483
OrganismSechium edule (Chayote v1)
Descriptionprotein SLOW GREEN 1, chloroplastic-like
Genome locationLG02:44875604..44876348
RNA-Seq ExpressionSed0009483
SyntenySed0009483
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596428.1 protein SLOW GREEN 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]4.7e-2543.92Show/hide
Query:  PNPPNIVEFDKEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDP
        P PP  VE  KE  D +ED+ R L+EQ  +NPNDV  L + M+VR  A K PEA   ++RLIEL+PD+L+WL+ +  ++  +GDSE AR +FER+L KDP
Subjt:  PNPPNIVEFDKEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDP

Query:  CQFKAYQGLAYTIKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQ
         Q +AY GL    + S+T +L+A+  +++G LE+ K+   K++ ++ +
Subjt:  CQFKAYQGLAYTIKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQ

KAG7027970.1 protein SLOW GREEN 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]4.7e-2543.92Show/hide
Query:  PNPPNIVEFDKEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDP
        P PP  VE  KE  D +ED+ R L+EQ  +NPNDV  L + M+VR  A K PEA   ++RLIEL+PD+L+WL+ +  ++  +GDSE AR +FER+L KDP
Subjt:  PNPPNIVEFDKEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDP

Query:  CQFKAYQGLAYTIKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQ
         Q +AY GL    + S+T +L+A+  +++G LE+ K+   K++ ++ +
Subjt:  CQFKAYQGLAYTIKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQ

XP_022145509.1 protein SLOW GREEN 1, chloroplastic-like [Momordica charantia]6.2e-2543.05Show/hide
Query:  PNPPNIVEFDKEWMDSQ---EDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLE
        P PP  VE  KE  D +   E++ R L+EQ  NNPND+  L + M+VR  A K PEA   ++RLIEL+PD+L+WL+ +  ++S +G+SE AR +FER+L 
Subjt:  PNPPNIVEFDKEWMDSQ---EDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLE

Query:  KDPCQFKAYQGLAYTIKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQ
        KDP Q +AY GL    +PS+T +L  +  +I+  L N K+H  K++ ++++
Subjt:  KDPCQFKAYQGLAYTIKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQ

XP_022951549.1 protein SLOW GREEN 1, chloroplastic-like [Cucurbita moschata]4.7e-2543.92Show/hide
Query:  PNPPNIVEFDKEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDP
        P PP  VE  KE  D +ED+ R L+EQ  +NPNDV  L + M+VR  A K PEA   ++RLIEL+PD+L+WL+ +  ++  +GDSE AR +FER+L KDP
Subjt:  PNPPNIVEFDKEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDP

Query:  CQFKAYQGLAYTIKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQ
         Q +AY GL    + S+T +L+A+  +++G LE+ K+   K++ ++ +
Subjt:  CQFKAYQGLAYTIKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQ

XP_023005898.1 protein SLOW GREEN 1, chloroplastic-like [Cucurbita maxima]1.1e-2443.24Show/hide
Query:  PNPPNIVEFDKEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDP
        P PP  VE  KE  D +ED+ R L+EQ  +NPNDV  L + M+VR  + K PEA   ++RLIEL+PD+L+WL+ +  ++  +GDSE AR +FER+L KDP
Subjt:  PNPPNIVEFDKEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDP

Query:  CQFKAYQGLAYTIKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQ
         Q +AY GL    + S+T +L+A+  +++G LE+ K+   K++ ++ +
Subjt:  CQFKAYQGLAYTIKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQ

TrEMBL top hitse value%identityAlignment
A0A1S3B6T4 protein SLOW GREEN 1, chloroplastic6.0e-1837.01Show/hide
Query:  PNPPNIVEFDKEWMDSQEDEARK------LDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFER
        P PP  VE  +E   S +DEA +      L+E+  NN NDV  L + ++V   A K PEA   ++RLI+L+P++L+WL+ +  + S +GDSE AR +F++
Subjt:  PNPPNIVEFDKEWMDSQEDEARK------LDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFER

Query:  VLEKDPCQFKAYQGLAYTIKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQ
        +LEKDP Q +AY GL    + S+  +L+A+  +++  LE+ K++  K++ ++ +
Subjt:  VLEKDPCQFKAYQGLAYTIKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQ

A0A5D3DP70 Protein SLOW GREEN 16.0e-1837.01Show/hide
Query:  PNPPNIVEFDKEWMDSQEDEARK------LDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFER
        P PP  VE  +E   S +DEA +      L+E+  NN NDV  L + ++V   A K PEA   ++RLI+L+P++L+WL+ +  + S +GDSE AR +F++
Subjt:  PNPPNIVEFDKEWMDSQEDEARK------LDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFER

Query:  VLEKDPCQFKAYQGLAYTIKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQ
        +LEKDP Q +AY GL    + S+  +L+A+  +++  LE+ K++  K++ ++ +
Subjt:  VLEKDPCQFKAYQGLAYTIKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQ

A0A6J1CVG3 protein SLOW GREEN 1, chloroplastic-like3.0e-2543.05Show/hide
Query:  PNPPNIVEFDKEWMDSQ---EDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLE
        P PP  VE  KE  D +   E++ R L+EQ  NNPND+  L + M+VR  A K PEA   ++RLIEL+PD+L+WL+ +  ++S +G+SE AR +FER+L 
Subjt:  PNPPNIVEFDKEWMDSQ---EDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLE

Query:  KDPCQFKAYQGLAYTIKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQ
        KDP Q +AY GL    +PS+T +L  +  +I+  L N K+H  K++ ++++
Subjt:  KDPCQFKAYQGLAYTIKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQ

A0A6J1GJ39 protein SLOW GREEN 1, chloroplastic-like2.3e-2543.92Show/hide
Query:  PNPPNIVEFDKEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDP
        P PP  VE  KE  D +ED+ R L+EQ  +NPNDV  L + M+VR  A K PEA   ++RLIEL+PD+L+WL+ +  ++  +GDSE AR +FER+L KDP
Subjt:  PNPPNIVEFDKEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDP

Query:  CQFKAYQGLAYTIKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQ
         Q +AY GL    + S+T +L+A+  +++G LE+ K+   K++ ++ +
Subjt:  CQFKAYQGLAYTIKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQ

A0A6J1L0L6 protein SLOW GREEN 1, chloroplastic-like5.1e-2543.24Show/hide
Query:  PNPPNIVEFDKEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDP
        P PP  VE  KE  D +ED+ R L+EQ  +NPNDV  L + M+VR  + K PEA   ++RLIEL+PD+L+WL+ +  ++  +GDSE AR +FER+L KDP
Subjt:  PNPPNIVEFDKEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDP

Query:  CQFKAYQGLAYTIKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQ
         Q +AY GL    + S+T +L+A+  +++G LE+ K+   K++ ++ +
Subjt:  CQFKAYQGLAYTIKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQ

SwissProt top hitse value%identityAlignment
Q9LS48 protein SLOW GREEN 1, chloroplastic1.6e-0427.37Show/hide
Query:  KEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDPCQFKA
        +E  + +  E   L E   + P  V  L + ++ +    +  EA   + RL+  +P+E +W      L  +MG  E+AR  FE +L+++P  F+A
Subjt:  KEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDPCQFKA

Arabidopsis top hitse value%identityAlignment
AT2G37400.1 Tetratricopeptide repeat (TPR)-like superfamily protein9.2e-1934.12Show/hide
Query:  PVHRFPIAPTPFRSRLRIASLQPNPPNIVEFDKEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFL
        P    P+A TP      + SL+ +  N+         S E+E R L+E  A++P+DV  L + M+VR  + KL EA   ++RLIEL+P+E +W + +  +
Subjt:  PVHRFPIAPTPFRSRLRIASLQPNPPNIVEFDKEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFL

Query:  FSKMGDSESARNDFERVLEKDPCQFKAYQGLAYTIKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQ
        FS  GD ESA+  FE +L KDP + +AY GL      S    L A++K+I+  +   K+   + D+++ +
Subjt:  FSKMGDSESARNDFERVLEKDPCQFKAYQGLAYTIKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQ

AT3G09490.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.9e-1135.04Show/hide
Query:  LDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDPCQFKAYQGLA---YTIKPSETYA
        L++      NDVN L    +++F + K  +A   ++RLIE++P E KW   +  + S  G SESA   FE +LEKDP +  AY  L    Y  KP     
Subjt:  LDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDPCQFKAYQGLA---YTIKPSETYA

Query:  LEAMQKKIKGVLENFKE
        L  ++K+I  V+   K+
Subjt:  LEAMQKKIKGVLENFKE

AT3G18420.1 Protein prenylyltransferase superfamily protein1.2e-0527.37Show/hide
Query:  KEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDPCQFKA
        +E  + +  E   L E   + P  V  L + ++ +    +  EA   + RL+  +P+E +W      L  +MG  E+AR  FE +L+++P  F+A
Subjt:  KEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDPCQFKA

AT3G53560.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.6e-1532.88Show/hide
Query:  PPNIVEFDKEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDPCQ
        PP  VE  KE +  +E+E R LDE    +P+DV+ L + M+V+  + KL EA   ++RLI+L+P+E +W + +  +F+  GD + A+  FE +L KDP +
Subjt:  PPNIVEFDKEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDFERVLEKDPCQ

Query:  FKAYQGLAYTIKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQ
         +AY GL      +    L+ ++ +I+  +   K+   +ND ++ +
Subjt:  FKAYQGLAYTIKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQ

AT5G02590.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.9e-1631.85Show/hide
Query:  IASLQPNPPNIVEFDKEWMDS---QEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDF
        + S  P P    +   + + S   +E+E   L++    NPNDV  L + MK++F    +  A   +NRLIE++P+E +W I +  + +  GD +SA   F
Subjt:  IASLQPNPPNIVEFDKEWMDS---QEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWLIWRGFLFSKMGDSESARNDF

Query:  ERVLEKDPCQFKAYQGLAYTIKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQD
        E VL KDP + +AY GL      SE+  L  ++ +I   +E  K    K + K+ +D
Subjt:  ERVLEKDPCQFKAYQGLAYTIKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCTCTAGTTACACTGCAACATTGCTGTCGTTCCCTTCACCTTCCCGTCCATCGCTTCCCCATAGCACCGACGCCGTTTAGATCTCGACTGCGCATAGCATCGCT
GCAACCAAATCCGCCGAACATCGTGGAGTTTGATAAGGAATGGATGGACAGTCAAGAAGATGAGGCGAGGAAACTAGACGAACAACAGGCGAACAATCCCAACGATGTTA
ACATTCTTGTAGCGTTCATGAAGGTAAGATTTCACGCTTCCAAGTTGCCTGAAGCTCATACCAATGTCAATCGTTTAATTGAACTCAAGCCCGATGAATTAAAATGGCTC
ATATGGAGGGGCTTTCTTTTTAGCAAAATGGGCGATTCTGAATCGGCAAGAAACGATTTCGAGAGGGTTTTAGAGAAGGATCCTTGTCAGTTTAAGGCATATCAAGGGCT
TGCATATACAATCAAACCATCAGAAACTTATGCATTGGAAGCCATGCAGAAGAAGATCAAAGGAGTACTCGAAAATTTCAAGGAACATATAGTGAAGAATGATGTAAAGG
AGATTCAAGATGATGTTGATATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTCTCTAGTTACACTGCAACATTGCTGTCGTTCCCTTCACCTTCCCGTCCATCGCTTCCCCATAGCACCGACGCCGTTTAGATCTCGACTGCGCATAGCATCGCT
GCAACCAAATCCGCCGAACATCGTGGAGTTTGATAAGGAATGGATGGACAGTCAAGAAGATGAGGCGAGGAAACTAGACGAACAACAGGCGAACAATCCCAACGATGTTA
ACATTCTTGTAGCGTTCATGAAGGTAAGATTTCACGCTTCCAAGTTGCCTGAAGCTCATACCAATGTCAATCGTTTAATTGAACTCAAGCCCGATGAATTAAAATGGCTC
ATATGGAGGGGCTTTCTTTTTAGCAAAATGGGCGATTCTGAATCGGCAAGAAACGATTTCGAGAGGGTTTTAGAGAAGGATCCTTGTCAGTTTAAGGCATATCAAGGGCT
TGCATATACAATCAAACCATCAGAAACTTATGCATTGGAAGCCATGCAGAAGAAGATCAAAGGAGTACTCGAAAATTTCAAGGAACATATAGTGAAGAATGATGTAAAGG
AGATTCAAGATGATGTTGATATCTGA
Protein sequenceShow/hide protein sequence
MDSLVTLQHCCRSLHLPVHRFPIAPTPFRSRLRIASLQPNPPNIVEFDKEWMDSQEDEARKLDEQQANNPNDVNILVAFMKVRFHASKLPEAHTNVNRLIELKPDELKWL
IWRGFLFSKMGDSESARNDFERVLEKDPCQFKAYQGLAYTIKPSETYALEAMQKKIKGVLENFKEHIVKNDVKEIQDDVDI