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Sed0009487 (gene) of Chayote v1 genome

Gene IDSed0009487
OrganismSechium edule (Chayote v1)
DescriptionDNA ligase
Genome locationLG13:24799508..24799846
RNA-Seq ExpressionSed0009487
SyntenySed0009487
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7031776.1 hypothetical protein SDJN02_05817, partial [Cucurbita argyrosperma subsp. argyrosperma]8.3e-3877.97Show/hide
Query:  MLND--PFSFTHKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE----CRNLVAKIGRSRRRYHHSADFRYDPSSYALNFEDDRVRDDDY
        MLND  PFSFT KLKSSI CF  +H DF E+E D SSPRTP+SPLKSMAA   E    CRNLVA+IGRSRRRYHHSADFRYDPSSYALNFED++VRDDD 
Subjt:  MLND--PFSFTHKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE----CRNLVAKIGRSRRRYHHSADFRYDPSSYALNFEDDRVRDDDY

Query:  EFPIRDFASRLPASPPST
        EFPIRDFASRLPASPP++
Subjt:  EFPIRDFASRLPASPPST
XP_022138148.1 uncharacterized protein LOC111009386 [Momordica charantia]5.2e-3270.18Show/hide
Query:  NDPFSFTHKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE----CRNLVAKIGRSRRRYHHSADFRYDPSSYALNFEDDRVRDDDYEFPI
        + PFSFTHKLKSSI CF  +H D  + E DE+S R+P+SPLKS A+   E    CRNLVA+IGRSRRRYHHSADFRYDPSSYALNFED+  R DD +FPI
Subjt:  NDPFSFTHKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE----CRNLVAKIGRSRRRYHHSADFRYDPSSYALNFEDDRVRDDDYEFPI

Query:  RDFASRLPASPPST
        RDFASRLPASP S+
Subjt:  RDFASRLPASPPST
XP_022940408.1 uncharacterized protein LOC111446022 [Cucurbita moschata]8.3e-3877.97Show/hide
Query:  MLND--PFSFTHKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE----CRNLVAKIGRSRRRYHHSADFRYDPSSYALNFEDDRVRDDDY
        MLND  PFSFT KLKSSI CF  +H DF E+E D SSPRTP+SPLKSMAA   E    CRNLVA+IGRSRRRYHHSADFRYDPSSYALNFED++VRDDD 
Subjt:  MLND--PFSFTHKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE----CRNLVAKIGRSRRRYHHSADFRYDPSSYALNFEDDRVRDDDY

Query:  EFPIRDFASRLPASPPST
        EFPIRDFASRLPASPP++
Subjt:  EFPIRDFASRLPASPPST
XP_022981208.1 uncharacterized protein LOC111480417 [Cucurbita maxima]1.3e-3878.81Show/hide
Query:  MLND--PFSFTHKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE----CRNLVAKIGRSRRRYHHSADFRYDPSSYALNFEDDRVRDDDY
        MLN+  PFSFT KLKSSIRCF  +HSDF ESE D+SSPRTP+SPLKSMAA   E    CRNLVA+IGR RRRYHHSADFRYDPSSYALNFED++VRDDD 
Subjt:  MLND--PFSFTHKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE----CRNLVAKIGRSRRRYHHSADFRYDPSSYALNFEDDRVRDDDY

Query:  EFPIRDFASRLPASPPST
        EFPIRDFASRLPASPP++
Subjt:  EFPIRDFASRLPASPPST
XP_023523424.1 uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo]4.9e-3877.97Show/hide
Query:  MLND--PFSFTHKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE----CRNLVAKIGRSRRRYHHSADFRYDPSSYALNFEDDRVRDDDY
        MLND  PFSFT KLKSSI CF  +H DF E+E D+SSPRTP+SPLKSMAA   E    CRNLVA+IGRSRRRYHHSADFRYDPSSYALNFED++VRDDD 
Subjt:  MLND--PFSFTHKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE----CRNLVAKIGRSRRRYHHSADFRYDPSSYALNFEDDRVRDDDY

Query:  EFPIRDFASRLPASPPST
        EFPIRDFASRLPASPP++
Subjt:  EFPIRDFASRLPASPPST
TrEMBL top hitse value%identityAlignment
A0A0A0L4E2 Uncharacterized protein2.1e-2363.39Show/hide
Query:  DPFSFTHKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE----CRNLVAKIG-RSRRRYHHSADFRYDPSSYALNFEDDRVRDDDYEFPI
        +PFSFTHKLKS I CF  +H    E   + SSP +P   LKSM +   E    CR+LVA+I   SRRRYHHS DFRYDPSSYALNFED+++R DD EFPI
Subjt:  DPFSFTHKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE----CRNLVAKIG-RSRRRYHHSADFRYDPSSYALNFEDDRVRDDDYEFPI

Query:  RDFASRLPASPP
        RDF SRLPASPP
Subjt:  RDFASRLPASPP
A0A5A7VBS3 DNA ligase3.7e-2362.73Show/hide
Query:  DPFSFTHKLKSSI-RCFHFNH-SDFSESEADESSPRTPKSPLKSMAAAAAECRNLVAKIG-RSRRRYHHSADFRYDPSSYALNFEDDRVRDDDYEFPIRD
        +PFSFTHKLKSSI  CF  +H ++  E+E D  + ++  S L  +      CR+LVA+I   SRRRYHHSADFRYDPSSYALNFED++VRDD+ EFPIRD
Subjt:  DPFSFTHKLKSSI-RCFHFNH-SDFSESEADESSPRTPKSPLKSMAAAAAECRNLVAKIG-RSRRRYHHSADFRYDPSSYALNFEDDRVRDDDYEFPIRD

Query:  FASRLPASPP
        F SRLPASPP
Subjt:  FASRLPASPP
A0A6J1CC83 uncharacterized protein LOC1110093862.5e-3270.18Show/hide
Query:  NDPFSFTHKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE----CRNLVAKIGRSRRRYHHSADFRYDPSSYALNFEDDRVRDDDYEFPI
        + PFSFTHKLKSSI CF  +H D  + E DE+S R+P+SPLKS A+   E    CRNLVA+IGRSRRRYHHSADFRYDPSSYALNFED+  R DD +FPI
Subjt:  NDPFSFTHKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE----CRNLVAKIGRSRRRYHHSADFRYDPSSYALNFEDDRVRDDDYEFPI

Query:  RDFASRLPASPPST
        RDFASRLPASP S+
Subjt:  RDFASRLPASPPST
A0A6J1FP70 uncharacterized protein LOC1114460224.0e-3877.97Show/hide
Query:  MLND--PFSFTHKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE----CRNLVAKIGRSRRRYHHSADFRYDPSSYALNFEDDRVRDDDY
        MLND  PFSFT KLKSSI CF  +H DF E+E D SSPRTP+SPLKSMAA   E    CRNLVA+IGRSRRRYHHSADFRYDPSSYALNFED++VRDDD 
Subjt:  MLND--PFSFTHKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE----CRNLVAKIGRSRRRYHHSADFRYDPSSYALNFEDDRVRDDDY

Query:  EFPIRDFASRLPASPPST
        EFPIRDFASRLPASPP++
Subjt:  EFPIRDFASRLPASPPST
A0A6J1J1H3 uncharacterized protein LOC1114804176.2e-3978.81Show/hide
Query:  MLND--PFSFTHKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE----CRNLVAKIGRSRRRYHHSADFRYDPSSYALNFEDDRVRDDDY
        MLN+  PFSFT KLKSSIRCF  +HSDF ESE D+SSPRTP+SPLKSMAA   E    CRNLVA+IGR RRRYHHSADFRYDPSSYALNFED++VRDDD 
Subjt:  MLND--PFSFTHKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE----CRNLVAKIGRSRRRYHHSADFRYDPSSYALNFEDDRVRDDDY

Query:  EFPIRDFASRLPASPPST
        EFPIRDFASRLPASPP++
Subjt:  EFPIRDFASRLPASPPST
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G11070.1 unknown protein1.5e-0835.54Show/hide
Query:  HKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE-----------------CRNLVAKIGRSRRRYHHS----ADFRYDPSSYALNFEDDR
        H+++S I C   N     E+       RTP+SP + + + A E                 CRN           +HHS     DF YDP SYALNFED+ 
Subjt:  HKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAE-----------------CRNLVAKIGRSRRRYHHS----ADFRYDPSSYALNFEDDR

Query:  VRDDDYEFPIRDFASRLPASP
          DDD  FP  +F +RLP SP
Subjt:  VRDDDYEFPIRDFASRLPASP
AT5G35090.1 unknown protein3.0e-0938.55Show/hide
Query:  KSP--LKSMAAAAAECRNLVAKI--------GRSRRRYHHSADFRYDPSSYALNFEDDRVRDDDYEFPIRDFASRLPASPPST
        KSP   ++++ +  +C++L+ ++        G  +    H+ADF YDPSSYALNF+     D+   FP+R+F++RLP SPPS+
Subjt:  KSP--LKSMAAAAAECRNLVAKI--------GRSRRRYHHSADFRYDPSSYALNFEDDRVRDDDYEFPIRDFASRLPASPPST

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAACGATCCATTTTCATTCACTCACAAACTCAAATCCTCAATCCGTTGTTTCCATTTCAATCACAGCGATTTTTCCGAAAGCGAAGCCGATGAATCTTCTCCACG
AACTCCTAAATCGCCTCTCAAATCCATGGCCGCCGCCGCCGCAGAGTGCCGGAACCTCGTCGCTAAGATCGGCCGGAGTCGCCGCCGGTACCACCACTCCGCCGATTTCC
GATACGATCCTTCCAGCTATGCGCTTAATTTCGAGGACGATCGAGTTCGCGATGATGATTATGAGTTTCCGATTAGGGATTTCGCTTCGAGGTTGCCGGCGTCTCCGCCG
TCTACATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAACGATCCATTTTCATTCACTCACAAACTCAAATCCTCAATCCGTTGTTTCCATTTCAATCACAGCGATTTTTCCGAAAGCGAAGCCGATGAATCTTCTCCACG
AACTCCTAAATCGCCTCTCAAATCCATGGCCGCCGCCGCCGCAGAGTGCCGGAACCTCGTCGCTAAGATCGGCCGGAGTCGCCGCCGGTACCACCACTCCGCCGATTTCC
GATACGATCCTTCCAGCTATGCGCTTAATTTCGAGGACGATCGAGTTCGCGATGATGATTATGAGTTTCCGATTAGGGATTTCGCTTCGAGGTTGCCGGCGTCTCCGCCG
TCTACATGA
Protein sequenceShow/hide protein sequence
MLNDPFSFTHKLKSSIRCFHFNHSDFSESEADESSPRTPKSPLKSMAAAAAECRNLVAKIGRSRRRYHHSADFRYDPSSYALNFEDDRVRDDDYEFPIRDFASRLPASPP
ST