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Sed0009492 (gene) of Chayote v1 genome

Gene IDSed0009492
OrganismSechium edule (Chayote v1)
DescriptionPhytoene synthase, chloroplastic
Genome locationLG01:62710182..62711971
RNA-Seq ExpressionSed0009492
SyntenySed0009492
Gene Ontology termsGO:0004311 - farnesyltranstransferase activity (molecular function)
InterPro domainsIPR008949 - Isoprenoid synthase domain superfamily
IPR044843 - Trans-isoprenyl diphosphate synthases, bacterial-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
APO14284.1 phytoene synthase 2 [Luffa aegyptiaca]2.8e-2939.51Show/hide
Query:  MTKERQRAIGAIYVWCRRTDGLVDSPDAV---------------------PY-------------------------------------------FCCCN
        MTKERQRAI AIYVWCRRTD LVD P+AV                     PY                                           +  C 
Subjt:  MTKERQRAIGAIYVWCRRTDGLVDSPDAV---------------------PY-------------------------------------------FCCCN

Query:  CIVSMWLELLGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFY
         +       +GLMSVPVMGIAPDSLL TQ IY+A                                                   WREF+K QIKRARFY
Subjt:  CIVSMWLELLGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFY

Query:  FDLAEKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK
        F LAE+GASQ DKASRWP+WSSLML RKILD I+E+ YDNFTK
Subjt:  FDLAEKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK

KAG7010227.1 Phytoene synthase 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]3.4e-2738.49Show/hide
Query:  MTKERQRAIGAIYVWCRRTDGLVDSPDAV---------------------PY---------------------------------FCCCNCIVSMWL---
        MTKERQRAI AIYVWCRRTD LVD P+A                      PY                                  C  +    ++L   
Subjt:  MTKERQRAIGAIYVWCRRTDGLVDSPDAV---------------------PY---------------------------------FCCCNCIVSMWL---

Query:  ---ELLGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFYFDLA
             +GLMSVPVMGIAPDS L +Q IYTA                                                   WREF+K QIKRARFYF  A
Subjt:  ---ELLGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFYFDLA

Query:  EKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK
        EKGASQ DK+SRWP+WSSLML RKIL+ I+E+ Y+NFTK
Subjt:  EKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK

XP_008449808.1 PREDICTED: phytoene synthase 2, chloroplastic [Cucumis melo]1.5e-2739.33Show/hide
Query:  MTKERQRAIGAIYVWCRRTDGLVDSPDAV---------------------PY-----------------------------FCCCNCIVSMWLEL-----
        MTKERQRAI AIYVWCRRTD LVD P+AV                     PY                                  C    + EL     
Subjt:  MTKERQRAIGAIYVWCRRTDGLVDSPDAV---------------------PY-----------------------------FCCCNCIVSMWLEL-----

Query:  -----LGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFYFDLA
             +GLMSVPVMGIAPDS L T  IY+A                                                   WREF+K QIKRARFYF LA
Subjt:  -----LGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFYFDLA

Query:  EKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK
        E+GASQ DKASRWP+WSSLML RKIL+ I+E+ Y+NFTK
Subjt:  EKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK

XP_022153760.1 phytoene synthase 2, chloroplastic-like [Momordica charantia]4.3e-3040.59Show/hide
Query:  MTKERQRAIGAIYVWCRRTDGLVDSPDAV---------------------PY-----------------------------FCCCNCIVSMWLEL-----
        MTKERQRAI AIYVWCRRTD LVD P+AV                     PY                                  C    + EL     
Subjt:  MTKERQRAIGAIYVWCRRTDGLVDSPDAV---------------------PY-----------------------------FCCCNCIVSMWLEL-----

Query:  -----LGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFYFDLA
             +GLMSVPVMGIAPDS LPTQ +Y+A                                                   WREF+K Q+KRARFYF LA
Subjt:  -----LGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFYFDLA

Query:  EKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK
        EKGASQ DKASRWP+WSSLML RKILD I+E+ YDNFTK
Subjt:  EKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK

XP_038901205.1 phytoene synthase 2, chloroplastic-like [Benincasa hispida]7.3e-3041Show/hide
Query:  MTKERQRAIGAIYVWCRRTDGLVDSPDAV---------------------PY-----------------------------FCCCNCIVSMWLEL-----
        MTKERQRAI AIYVWCRRTD LVD P+AV                     PY                                  C    + EL     
Subjt:  MTKERQRAIGAIYVWCRRTDGLVDSPDAV---------------------PY-----------------------------FCCCNCIVSMWLEL-----

Query:  -----LGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFYFDLA
             +GLMSVPVMGIAPDS LPTQ IY+A                                                   WREFIK QIKRARFYF LA
Subjt:  -----LGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFYFDLA

Query:  EKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK
        EKGASQ DKASRWP+WSSLML RKIL+ I+E+ Y+NFTK
Subjt:  EKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK

TrEMBL top hitse value%identityAlignment
A0A1L5JHW5 Phytoene synthase 21.3e-2939.51Show/hide
Query:  MTKERQRAIGAIYVWCRRTDGLVDSPDAV---------------------PY-------------------------------------------FCCCN
        MTKERQRAI AIYVWCRRTD LVD P+AV                     PY                                           +  C 
Subjt:  MTKERQRAIGAIYVWCRRTDGLVDSPDAV---------------------PY-------------------------------------------FCCCN

Query:  CIVSMWLELLGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFY
         +       +GLMSVPVMGIAPDSLL TQ IY+A                                                   WREF+K QIKRARFY
Subjt:  CIVSMWLELLGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFY

Query:  FDLAEKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK
        F LAE+GASQ DKASRWP+WSSLML RKILD I+E+ YDNFTK
Subjt:  FDLAEKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK

A0A5A7TAG3 Phytoene synthase 27.4e-2839.33Show/hide
Query:  MTKERQRAIGAIYVWCRRTDGLVDSPDAV---------------------PY-----------------------------FCCCNCIVSMWLEL-----
        MTKERQRAI AIYVWCRRTD LVD P+AV                     PY                                  C    + EL     
Subjt:  MTKERQRAIGAIYVWCRRTDGLVDSPDAV---------------------PY-----------------------------FCCCNCIVSMWLEL-----

Query:  -----LGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFYFDLA
             +GLMSVPVMGIAPDS L T  IY+A                                                   WREF+K QIKRARFYF LA
Subjt:  -----LGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFYFDLA

Query:  EKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK
        E+GASQ DKASRWP+WSSLML RKIL+ I+E+ Y+NFTK
Subjt:  EKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK

A0A6J1DHQ7 phytoene synthase 2, chloroplastic-like2.1e-3040.59Show/hide
Query:  MTKERQRAIGAIYVWCRRTDGLVDSPDAV---------------------PY-----------------------------FCCCNCIVSMWLEL-----
        MTKERQRAI AIYVWCRRTD LVD P+AV                     PY                                  C    + EL     
Subjt:  MTKERQRAIGAIYVWCRRTDGLVDSPDAV---------------------PY-----------------------------FCCCNCIVSMWLEL-----

Query:  -----LGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFYFDLA
             +GLMSVPVMGIAPDS LPTQ +Y+A                                                   WREF+K Q+KRARFYF LA
Subjt:  -----LGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFYFDLA

Query:  EKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK
        EKGASQ DKASRWP+WSSLML RKILD I+E+ YDNFTK
Subjt:  EKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK

A0A6J1JAD4 phytoene synthase 2, chloroplastic-like2.1e-2738.91Show/hide
Query:  MTKERQRAIGAIYVWCRRTDGLVDSPDAV---------------------PY---------------------------------FCCCNCIVSMWL---
        MTKERQRAI AIYVWCRRTD LVD P+A                      PY                                  C  +    ++L   
Subjt:  MTKERQRAIGAIYVWCRRTDGLVDSPDAV---------------------PY---------------------------------FCCCNCIVSMWL---

Query:  ---ELLGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFYFDLA
             +GLMSVPVMGIAPDS L +Q IYTA                                                   WREF+K QIKRARFYF  A
Subjt:  ---ELLGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFYFDLA

Query:  EKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK
        EKGASQ DK SRWPIWSSLML RKIL+ I+E+ Y+NFTK
Subjt:  EKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK

F8U9A7 Phytoene synthase7.4e-2839.33Show/hide
Query:  MTKERQRAIGAIYVWCRRTDGLVDSPDAV---------------------PY-----------------------------FCCCNCIVSMWLEL-----
        MTKERQRAI AIYVWCRRTD LVD P+AV                     PY                                  C    + EL     
Subjt:  MTKERQRAIGAIYVWCRRTDGLVDSPDAV---------------------PY-----------------------------FCCCNCIVSMWLEL-----

Query:  -----LGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFYFDLA
             +GLMSVPVMGIAPDS L T  IY+A                                                   WREF+K QIKRARFYF LA
Subjt:  -----LGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFYFDLA

Query:  EKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK
        E+GASQ DKASRWP+WSSLML RKIL+ I+E+ Y+NFTK
Subjt:  EKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK

SwissProt top hitse value%identityAlignment
P49085 Phytoene synthase 1, chloroplastic2.4e-2031.38Show/hide
Query:  MTKERQRAIGAIYVWCRRTDGLVDSPDA---------------------VPYFCC------------------CNCIVSMWLEL----------------
        MT+ER+RAI AIYVWCRRTD LVD P+A                      PY                      + I  M  +L                
Subjt:  MTKERQRAIGAIYVWCRRTDGLVDSPDA---------------------VPYFCC------------------CNCIVSMWLEL----------------

Query:  -----LGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFYFDLA
             +GLMSVPVMGIA +S   T+ +Y+A                                                   WR F+K QIKRAR +F+ A
Subjt:  -----LGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFYFDLA

Query:  EKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK
        E+G ++  +ASRWP+W+SL+L R+ILD I+ + Y+NFTK
Subjt:  EKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK

P49293 Phytoene synthase, chloroplastic9.0e-2332.92Show/hide
Query:  MTKERQRAIGAIYVWCRRTDGLVDSPDA---------------------------------------VPYFCCCNCIVSMWLEL----------------
        MT ERQ+AI AIYVWCRRTD LVD P+A                                       V      + I  M ++L                
Subjt:  MTKERQRAIGAIYVWCRRTDGLVDSPDA---------------------------------------VPYFCCCNCIVSMWLEL----------------

Query:  -----LGLMSVPVMGIAPDSLLPTQIIYTA----------------------------------------------------WREFIKAQIKRARFYFDL
             +GLMSVPVMGIAP+S   T+ +Y A                                                    WR F+K QIKRAR +FD 
Subjt:  -----LGLMSVPVMGIAPDSLLPTQIIYTA----------------------------------------------------WREFIKAQIKRARFYFDL

Query:  AEKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK
        AEKG  + +KASRWP+W+SL+L R+ILD I+ + YDNFTK
Subjt:  AEKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK

P53797 Phytoene synthase, chloroplastic6.4e-2131.8Show/hide
Query:  MTKERQRAIGAIYVWCRRTDGLVD-------SPDAV--------------PYFC------------------CCNCIVSMWLEL----------------
        MT ER+RAI AIYVWCRRTD LVD       +P A+              PY                      + +  M ++L                
Subjt:  MTKERQRAIGAIYVWCRRTDGLVD-------SPDAV--------------PYFC------------------CCNCIVSMWLEL----------------

Query:  -----LGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFYFDLA
             +GLMSVPVMGIAP+SL   + +Y A                                                   WR F+K QIKRAR +F+ A
Subjt:  -----LGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFYFDLA

Query:  EKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK
        EKG ++  +ASRWP+W+SL+L R+ILD I+ + Y+NFTK
Subjt:  EKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK

Q5Z5B7 Phytoene synthase 1, chloroplastic4.9e-2131.38Show/hide
Query:  MTKERQRAIGAIYVWCRRTDGLVDSPDAV---------------------PYFCC------------------CNCIVSMWLEL----------------
        MT++R+RAI AIYVWCRRTD LVD P+A                      PY                      + I  M  +L                
Subjt:  MTKERQRAIGAIYVWCRRTDGLVDSPDAV---------------------PYFCC------------------CNCIVSMWLEL----------------

Query:  -----LGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFYFDLA
             +GLMSVPVMGIAP+S   T+ +Y+A                                                   WR F+K QIKRAR +F+ A
Subjt:  -----LGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFYFDLA

Query:  EKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK
        E+G ++  +ASRWP+W+SL+L R+ILD I+ + Y+NFTK
Subjt:  EKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK

Q9SSU8 Phytoene synthase, chloroplastic1.2e-2232.22Show/hide
Query:  MTKERQRAIGAIYVWCRRTDGLVDSP---------------------DAVPYFC------------------CCNCIVSMWLEL----------------
        MT ER+RA+ AIYVWCRRTD LVD P                     D  PY                      + I  M ++L                
Subjt:  MTKERQRAIGAIYVWCRRTDGLVDSP---------------------DAVPYFC------------------CCNCIVSMWLEL----------------

Query:  -----LGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFYFDLA
             +GLMSVPVMGIAP+S   T+ +Y+A                                                   WR F+K QIKRAR +FD A
Subjt:  -----LGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFYFDLA

Query:  EKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK
        EKG ++   ASRWP+W+SL+L ++ILD I+ + YDNFTK
Subjt:  EKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK

Arabidopsis top hitse value%identityAlignment
AT5G17230.1 PHYTOENE SYNTHASE1.7e-2130.96Show/hide
Query:  MTKERQRAIGAIYVWCRRTDGLVDSPDA---------------------------------------VPYFCCCNCIVSMWLEL----------------
        MT ER++AI AIYVWCRRTD LVD P+A                                       V      + I  M ++L                
Subjt:  MTKERQRAIGAIYVWCRRTDGLVDSPDA---------------------------------------VPYFCCCNCIVSMWLEL----------------

Query:  -----LGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFYFDLA
             +GLMSVPVMGI P S   T+ +Y A                                                   WR F+K Q+KRAR +FD A
Subjt:  -----LGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFYFDLA

Query:  EKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK
        EKG ++   ASRWP+W+SL+L R+ILD I+ + Y+NFTK
Subjt:  EKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK

AT5G17230.2 PHYTOENE SYNTHASE1.7e-2130.96Show/hide
Query:  MTKERQRAIGAIYVWCRRTDGLVDSPDA---------------------------------------VPYFCCCNCIVSMWLEL----------------
        MT ER++AI AIYVWCRRTD LVD P+A                                       V      + I  M ++L                
Subjt:  MTKERQRAIGAIYVWCRRTDGLVDSPDA---------------------------------------VPYFCCCNCIVSMWLEL----------------

Query:  -----LGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFYFDLA
             +GLMSVPVMGI P S   T+ +Y A                                                   WR F+K Q+KRAR +FD A
Subjt:  -----LGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREFIKAQIKRARFYFDLA

Query:  EKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK
        EKG ++   ASRWP+W+SL+L R+ILD I+ + Y+NFTK
Subjt:  EKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK

AT5G17230.3 PHYTOENE SYNTHASE1.8e-1829.13Show/hide
Query:  MTKERQRAIGAIY---------------VWCRRTDGLVDSPDA---------------------------------------VPYFCCCNCIVSMWLEL-
        MT ER++AI AIY               VWCRRTD LVD P+A                                       V      + I  M ++L 
Subjt:  MTKERQRAIGAIY---------------VWCRRTDGLVDSPDA---------------------------------------VPYFCCCNCIVSMWLEL-

Query:  --------------------LGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREF
                            +GLMSVPVMGI P S   T+ +Y A                                                   WR F
Subjt:  --------------------LGLMSVPVMGIAPDSLLPTQIIYTA---------------------------------------------------WREF

Query:  IKAQIKRARFYFDLAEKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK
        +K Q+KRAR +FD AEKG ++   ASRWP+W+SL+L R+ILD I+ + Y+NFTK
Subjt:  IKAQIKRARFYFDLAEKGASQFDKASRWPIWSSLMLDRKILDVIKESGYDNFTK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAAGGAGAGGCAGAGAGCAATAGGAGCAATATATGTTTGGTGCAGAAGAACAGATGGACTTGTGGATAGCCCCGATGCAGTGCCTTATTTTTGTTGTTGTAATTG
TATTGTTAGTATGTGGCTGGAACTGTTGGGCTTAATGAGTGTGCCTGTTATGGGAATTGCTCCTGATTCTTTGCTTCCAACTCAAATTATTTACACTGCTTGGAGAGAAT
TCATAAAAGCACAGATCAAAAGGGCAAGGTTTTACTTCGATCTGGCAGAAAAGGGAGCCTCTCAGTTTGACAAGGCCAGTCGTTGGCCGATATGGTCATCCTTGATGCTG
GACCGCAAAATATTGGATGTCATCAAAGAAAGCGGTTACGACAACTTCACGAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACAAAGGAGAGGCAGAGAGCAATAGGAGCAATATATGTTTGGTGCAGAAGAACAGATGGACTTGTGGATAGCCCCGATGCAGTGCCTTATTTTTGTTGTTGTAATTG
TATTGTTAGTATGTGGCTGGAACTGTTGGGCTTAATGAGTGTGCCTGTTATGGGAATTGCTCCTGATTCTTTGCTTCCAACTCAAATTATTTACACTGCTTGGAGAGAAT
TCATAAAAGCACAGATCAAAAGGGCAAGGTTTTACTTCGATCTGGCAGAAAAGGGAGCCTCTCAGTTTGACAAGGCCAGTCGTTGGCCGATATGGTCATCCTTGATGCTG
GACCGCAAAATATTGGATGTCATCAAAGAAAGCGGTTACGACAACTTCACGAAGTGA
Protein sequenceShow/hide protein sequence
MTKERQRAIGAIYVWCRRTDGLVDSPDAVPYFCCCNCIVSMWLELLGLMSVPVMGIAPDSLLPTQIIYTAWREFIKAQIKRARFYFDLAEKGASQFDKASRWPIWSSLML
DRKILDVIKESGYDNFTK