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Sed0009578 (gene) of Chayote v1 genome

Gene IDSed0009578
OrganismSechium edule (Chayote v1)
Descriptionphotosystem II repair protein PSB27-H1, chloroplastic-like
Genome locationLG04:43592671..43593617
RNA-Seq ExpressionSed0009578
SyntenySed0009578
Gene Ontology termsGO:0010206 - photosystem II repair (biological process)
GO:0010207 - photosystem II assembly (biological process)
GO:0071484 - cellular response to light intensity (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009543 - chloroplast thylakoid lumen (cellular component)
InterPro domainsIPR025585 - Photosystem II Pbs27
IPR038450 - Photosystem II Pbs27 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589210.1 Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]6.6e-7185.12Show/hide
Query:  SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPRRRREFLSLTASVLATPWILFPPAPAQASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVAELR
        +S TL+TPCTSKSQPLIIP KPKST+SAAAV++ RRRRE LSLTASVLA PW+L PPAPAQAS+DEEYVKDTN VINKVRTTI M+++DPNVA AVAELR
Subjt:  SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPRRRREFLSLTASVLATPWILFPPAPAQASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVAELR

Query:  ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR
        ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHY+SFGPT PIPAKRK RILEEM+TAEK+L RGR
Subjt:  ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR
XP_022930794.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata]1.9e-7083.93Show/hide
Query:  SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPRRRREFLSLTASVLATPWILFPPAPAQASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVAELR
        +S TL+TPCTSKSQPLIIP KPKST+SAAA+++P RRRE LSLTASVLA PW+L PPAPAQAS+DEEYVKDTN VI+KVRTTI M+++DPNVA AVAELR
Subjt:  SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPRRRREFLSLTASVLATPWILFPPAPAQASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVAELR

Query:  ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR
        ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHY+SFGPT PIPAKRK RILEEM+TAEK+L RGR
Subjt:  ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR
XP_022952622.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata]2.0e-6782.46Show/hide
Query:  SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPR---RRREFLSLTASVLATPWILFPPAPAQASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVA
        +S TLITP TSKSQPLIIP+KPKS++SAAA        RRREFLSLTASVLA  W+LFPPAPA AS DEEYVKDT  VI KVRTTI M+++DPNVAAAVA
Subjt:  SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPR---RRREFLSLTASVLATPWILFPPAPAQASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVA

Query:  ELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR
        ELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPT PIPAKRK RILEEM TAEK+LLRGR
Subjt:  ELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR
XP_022988975.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima]1.9e-7084.52Show/hide
Query:  SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPRRRREFLSLTASVLATPWILFPPAPAQASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVAELR
        +S  L+TPCTSKSQPLIIP KPKST+SAAAV++P RRRE LSLTASVLA PW+L PPAPAQAS+DEEYVKDTN VI+KVRTTI M+++DPNVA AVAELR
Subjt:  SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPRRRREFLSLTASVLATPWILFPPAPAQASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVAELR

Query:  ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR
        ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHY+SFGPT PIPAKRK RILEEMDTAEK+L RGR
Subjt:  ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR
XP_023529218.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp. pepo]1.3e-7185.71Show/hide
Query:  SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPRRRREFLSLTASVLATPWILFPPAPAQASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVAELR
        +S TL+TPCTSKSQPLIIP KPKST+SAAAV++P RRRE LSLTASVLA PW+L PPAPAQAS+DEEYVKDTN VINKVRTTI M+++DPNVA AVAELR
Subjt:  SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPRRRREFLSLTASVLATPWILFPPAPAQASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVAELR

Query:  ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR
        ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHY+SFGPT PIPAKRK RILEEMDTAEK+L RGR
Subjt:  ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR
TrEMBL top hitse value%identityAlignment
A0A0A0K1S2 Uncharacterized protein3.4e-6579.76Show/hide
Query:  SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPRRRREFLSLTASVLATPWILFPPAPAQASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVAELR
        +S TLITPCTSKSQ   IP+KPKST+SAA      RRREFLSLTASVLA  ++LFP +PA A+ D+EYVKDTN VI KVRTTI M+R+DPNVAAAVA+LR
Subjt:  SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPRRRREFLSLTASVLATPWILFPPAPAQASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVAELR

Query:  ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR
        ESSN WVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPT PIPAKRK RILEEMDTAEK+LLRGR
Subjt:  ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR
A0A6J1ESI1 photosystem II repair protein PSB27-H1, chloroplastic-like9.3e-7183.93Show/hide
Query:  SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPRRRREFLSLTASVLATPWILFPPAPAQASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVAELR
        +S TL+TPCTSKSQPLIIP KPKST+SAAA+++P RRRE LSLTASVLA PW+L PPAPAQAS+DEEYVKDTN VI+KVRTTI M+++DPNVA AVAELR
Subjt:  SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPRRRREFLSLTASVLATPWILFPPAPAQASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVAELR

Query:  ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR
        ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHY+SFGPT PIPAKRK RILEEM+TAEK+L RGR
Subjt:  ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR
A0A6J1GKW7 photosystem II repair protein PSB27-H1, chloroplastic-like9.7e-6882.46Show/hide
Query:  SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPR---RRREFLSLTASVLATPWILFPPAPAQASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVA
        +S TLITP TSKSQPLIIP+KPKS++SAAA        RRREFLSLTASVLA  W+LFPPAPA AS DEEYVKDT  VI KVRTTI M+++DPNVAAAVA
Subjt:  SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPR---RRREFLSLTASVLATPWILFPPAPAQASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVA

Query:  ELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR
        ELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPT PIPAKRK RILEEM TAEK+LLRGR
Subjt:  ELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR
A0A6J1HZH1 photosystem II repair protein PSB27-H1, chloroplastic-like9.7e-6882.46Show/hide
Query:  SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPR---RRREFLSLTASVLATPWILFPPAPAQASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVA
        +S TLITP TSKSQPLIIP+KPKS++SAAA        RRREFLSLTASVLA  W+LFPPAPA AS DEEYVKDT  VI KVRTTI M+++DPNVAAAVA
Subjt:  SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPR---RRREFLSLTASVLATPWILFPPAPAQASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVA

Query:  ELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR
        ELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPT PIPAKRK RILEEM TAEK+LLRGR
Subjt:  ELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR
A0A6J1JL33 photosystem II repair protein PSB27-H1, chloroplastic-like9.3e-7184.52Show/hide
Query:  SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPRRRREFLSLTASVLATPWILFPPAPAQASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVAELR
        +S  L+TPCTSKSQPLIIP KPKST+SAAAV++P RRRE LSLTASVLA PW+L PPAPAQAS+DEEYVKDTN VI+KVRTTI M+++DPNVA AVAELR
Subjt:  SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPRRRREFLSLTASVLATPWILFPPAPAQASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVAELR

Query:  ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR
        ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHY+SFGPT PIPAKRK RILEEMDTAEK+L RGR
Subjt:  ESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR
SwissProt top hitse value%identityAlignment
Q9LR64 Photosystem II repair protein PSB27-H1, chloroplastic1.3e-4863.43Show/hide
Query:  ASSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPRR----RREFLSLTA-SVLATPWILF-PPAPAQASDDEEYVKDTNVVINKVRTTINMERSDPNVA
        +++ TL+ P     +P II     S+VS   +  PRR    RR+FLSL A S L T  I F  PAP  A++DEEY+KDT+ VI+KVR+T++M+++DPNVA
Subjt:  ASSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPRR----RREFLSLTA-SVLATPWILF-PPAPAQASDDEEYVKDTNVVINKVRTTINMERSDPNVA

Query:  AAVAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR
         AVAELRE+SNSWVAKYRKEK+LLG+ASFRD+YSALNAVSGHY+SFGPT PIPAKRK RILEEM+TAEK+L RGR
Subjt:  AAVAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR
Arabidopsis top hitse value%identityAlignment
AT1G03600.1 photosystem II family protein9.0e-5063.43Show/hide
Query:  ASSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPRR----RREFLSLTA-SVLATPWILF-PPAPAQASDDEEYVKDTNVVINKVRTTINMERSDPNVA
        +++ TL+ P     +P II     S+VS   +  PRR    RR+FLSL A S L T  I F  PAP  A++DEEY+KDT+ VI+KVR+T++M+++DPNVA
Subjt:  ASSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPRR----RREFLSLTA-SVLATPWILF-PPAPAQASDDEEYVKDTNVVINKVRTTINMERSDPNVA

Query:  AAVAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR
         AVAELRE+SNSWVAKYRKEK+LLG+ASFRD+YSALNAVSGHY+SFGPT PIPAKRK RILEEM+TAEK+L RGR
Subjt:  AAVAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCATCAACAACGCTGATAACTCCCTGTACCTCCAAATCTCAGCCTCTCATCATCCCCATCAAACCCAAATCCACCGTTTCCGCCGCCGCCGTCAACAATCCCCG
CCGCCGCCGTGAGTTCCTGTCCTTAACCGCCTCTGTTCTTGCAACGCCGTGGATCCTGTTCCCGCCGGCGCCGGCGCAAGCCTCGGACGACGAGGAGTACGTGAAGGACA
CCAATGTGGTGATAAACAAGGTTAGAACGACGATCAACATGGAGAGAAGCGACCCGAATGTGGCGGCGGCGGTGGCGGAGCTTCGAGAAAGTTCGAATTCTTGGGTGGCG
AAATACAGGAAGGAGAAGTCTCTGTTGGGGCGAGCTTCGTTTAGGGATATGTATTCGGCTCTCAATGCGGTTTCGGGCCATTACATTAGCTTTGGCCCGACCACGCCGAT
CCCGGCCAAGAGGAAGGTTAGGATTTTGGAAGAGATGGACACTGCTGAGAAATCTCTGTTGAGAGGGAGATGA
mRNA sequenceShow/hide mRNA sequence
CAACAAATAAGATAAGATGATAAGTACACGTGTCAAATACCCAATTCCCCAAATCCATCACTAAAAATCACTCATTTTCACAATTCCAATTCCCCCAAAATCATGGCCTC
ATCAACAACGCTGATAACTCCCTGTACCTCCAAATCTCAGCCTCTCATCATCCCCATCAAACCCAAATCCACCGTTTCCGCCGCCGCCGTCAACAATCCCCGCCGCCGCC
GTGAGTTCCTGTCCTTAACCGCCTCTGTTCTTGCAACGCCGTGGATCCTGTTCCCGCCGGCGCCGGCGCAAGCCTCGGACGACGAGGAGTACGTGAAGGACACCAATGTG
GTGATAAACAAGGTTAGAACGACGATCAACATGGAGAGAAGCGACCCGAATGTGGCGGCGGCGGTGGCGGAGCTTCGAGAAAGTTCGAATTCTTGGGTGGCGAAATACAG
GAAGGAGAAGTCTCTGTTGGGGCGAGCTTCGTTTAGGGATATGTATTCGGCTCTCAATGCGGTTTCGGGCCATTACATTAGCTTTGGCCCGACCACGCCGATCCCGGCCA
AGAGGAAGGTTAGGATTTTGGAAGAGATGGACACTGCTGAGAAATCTCTGTTGAGAGGGAGATGAGAATTATGTGAGACATTTTTAATTATTGCCATTTTTTTAAAATTT
AAAATTTATGGTTTTTCTGTGTATGTTTTTGTTTTTGTGACTAAGTATAGTGTATGGGGTTCACAATTTGTGAATTTACTAGAGGGGAAGATACTAAAACTCGGTGATAA
ATGCTTTGAGAGATTAATACATTGTAAGATTTTCTCCTAATATTGACTCTATATTTGTGTATTAGGCTAAATTATAAATTTTATCGTATGATTGATAAAAGTTAGAAATT
AGTGTTATTGATTTATAGATGGCAACCCAGTTTCAATGCTTTAATAAAATATTGTTTGTAAGGCGAA
Protein sequenceShow/hide protein sequence
MASSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPRRRREFLSLTASVLATPWILFPPAPAQASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVAELRESSNSWVA
KYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR