CuGenDBv2

Gene ID	Sed0009591
Organism	Sechium edule (Chayote v1)
Description	DNA polymerase delta subunit 4
Genome location	LG05:3983974..3985716
RNA-Seq Expression	Sed0009591
Synteny	Sed0009591
Gene Ontology terms	GO:0000731 - DNA synthesis involved in DNA repair (biological process) GO:0006261 - DNA-dependent DNA replication (biological process) GO:0043625 - delta DNA polymerase complex (cellular component) GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
InterPro domains	IPR007218 - DNA polymerase delta, subunit 4

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6605696.1 DNA polymerase delta subunit 4, partial [Cucurbita argyrosperma subsp. sororia]

1.9e-46

77.17

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Query:  MASARGGMKDFYKQRKNGGITKANNKAPKPASRKTKSPANSATLGSGTTQPAALISHGSLDLQDEYGESENRVRQFDMNMTYGPCLGMTRMERWDRACNL
        MASARGGMKDFYKQRKN G++K +    KP+SRKTKS ANSATL S   QPAALISHGSLDL+D+YGESEN +RQFDMNM YGPCLGMTRMERW+ A  L
Subjt:  MASARGGMKDFYKQRKNGGITKANNKAPKPASRKTKSPANSATLGSGTTQPAALISHGSLDLQDEYGESENRVRQFDMNMTYGPCLGMTRMERWDRACNL

Query:  GLNPPKAIEKLLKAGKVQLECLWGSRV
        GLNPPK IE LLK GKVQLECLW SR+
Subjt:  GLNPPKAIEKLLKAGKVQLECLWGSRV

XP_004143634.1 uncharacterized protein LOC101209940 [Cucumis sativus]

4.5e-48

78.74

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Query:  MASARGGMKDFYKQRKNGGITKANNKAPKPASRKTKSPANSATLGSGTTQPAALISHGSLDLQDEYGESENRVRQFDMNMTYGPCLGMTRMERWDRACNL
        MAS RGG+KDFYKQRK+ GI+KA  KA KP+SRKTKSPANSA+LGS   QPAAL+SHGSLDLQD+YG SEN +RQFDMN  YGPCLGMTRM RW+RAC+L
Subjt:  MASARGGMKDFYKQRKNGGITKANNKAPKPASRKTKSPANSATLGSGTTQPAALISHGSLDLQDEYGESENRVRQFDMNMTYGPCLGMTRMERWDRACNL

Query:  GLNPPKAIEKLLKAGKVQLECLWGSRV
        GLNPPK I  LLKAGKVQLECLW SRV
Subjt:  GLNPPKAIEKLLKAGKVQLECLWGSRV

XP_008467236.1 PREDICTED: DNA polymerase delta subunit 4 [Cucumis melo]

1.1e-49

80.31

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Query:  MASARGGMKDFYKQRKNGGITKANNKAPKPASRKTKSPANSATLGSGTTQPAALISHGSLDLQDEYGESENRVRQFDMNMTYGPCLGMTRMERWDRACNL
        MAS RGG+KDFYKQRK+ GI+KA  KA KP+SRKTKSPANSA+LGS   QPAAL+SHGSLDLQD+YGESEN +RQFDMNM YGPCLGMTRM RW+RAC+L
Subjt:  MASARGGMKDFYKQRKNGGITKANNKAPKPASRKTKSPANSATLGSGTTQPAALISHGSLDLQDEYGESENRVRQFDMNMTYGPCLGMTRMERWDRACNL

Query:  GLNPPKAIEKLLKAGKVQLECLWGSRV
        GLNPPK I  LLKAGKVQLECLW SRV
Subjt:  GLNPPKAIEKLLKAGKVQLECLWGSRV

XP_022957680.1 uncharacterized protein LOC111459143 [Cucurbita moschata]

4.2e-46

77.17

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Query:  MASARGGMKDFYKQRKNGGITKANNKAPKPASRKTKSPANSATLGSGTTQPAALISHGSLDLQDEYGESENRVRQFDMNMTYGPCLGMTRMERWDRACNL
        MASARGGMKDFYKQRKN G++K +    KP+SRKTKS ANSATL S   QPAALISHGSLDL+D+YGESEN +RQFDMNM YGPCLGMTRMERW+ A  L
Subjt:  MASARGGMKDFYKQRKNGGITKANNKAPKPASRKTKSPANSATLGSGTTQPAALISHGSLDLQDEYGESENRVRQFDMNMTYGPCLGMTRMERWDRACNL

Query:  GLNPPKAIEKLLKAGKVQLECLWGSRV
        GLNPPK IE LLK GKVQLECLW SR+
Subjt:  GLNPPKAIEKLLKAGKVQLECLWGSRV

XP_038875328.1 DNA polymerase delta subunit 4 [Benincasa hispida]

2.6e-51

81.89

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Query:  MASARGGMKDFYKQRKNGGITKANNKAPKPASRKTKSPANSATLGSGTTQPAALISHGSLDLQDEYGESENRVRQFDMNMTYGPCLGMTRMERWDRACNL
        MASARGG+KDFYKQRKN GI+KAN+KA KP+SRK KSPANSA+LGS   QPAALISHGSLDLQD+YG  EN +RQFDMNM YGPCLGMTRM RW+RACNL
Subjt:  MASARGGMKDFYKQRKNGGITKANNKAPKPASRKTKSPANSATLGSGTTQPAALISHGSLDLQDEYGESENRVRQFDMNMTYGPCLGMTRMERWDRACNL

Query:  GLNPPKAIEKLLKAGKVQLECLWGSRV
        GLNPPK IE LLKA KVQLECLW SRV
Subjt:  GLNPPKAIEKLLKAGKVQLECLWGSRV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KND6 Uncharacterized protein

2.2e-48

78.74

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Query:  MASARGGMKDFYKQRKNGGITKANNKAPKPASRKTKSPANSATLGSGTTQPAALISHGSLDLQDEYGESENRVRQFDMNMTYGPCLGMTRMERWDRACNL
        MAS RGG+KDFYKQRK+ GI+KA  KA KP+SRKTKSPANSA+LGS   QPAAL+SHGSLDLQD+YG SEN +RQFDMN  YGPCLGMTRM RW+RAC+L
Subjt:  MASARGGMKDFYKQRKNGGITKANNKAPKPASRKTKSPANSATLGSGTTQPAALISHGSLDLQDEYGESENRVRQFDMNMTYGPCLGMTRMERWDRACNL

Query:  GLNPPKAIEKLLKAGKVQLECLWGSRV
        GLNPPK I  LLKAGKVQLECLW SRV
Subjt:  GLNPPKAIEKLLKAGKVQLECLWGSRV

A0A1S3CT23 DNA polymerase delta subunit 4

5.2e-50

80.31

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Query:  MASARGGMKDFYKQRKNGGITKANNKAPKPASRKTKSPANSATLGSGTTQPAALISHGSLDLQDEYGESENRVRQFDMNMTYGPCLGMTRMERWDRACNL
        MAS RGG+KDFYKQRK+ GI+KA  KA KP+SRKTKSPANSA+LGS   QPAAL+SHGSLDLQD+YGESEN +RQFDMNM YGPCLGMTRM RW+RAC+L
Subjt:  MASARGGMKDFYKQRKNGGITKANNKAPKPASRKTKSPANSATLGSGTTQPAALISHGSLDLQDEYGESENRVRQFDMNMTYGPCLGMTRMERWDRACNL

Query:  GLNPPKAIEKLLKAGKVQLECLWGSRV
        GLNPPK I  LLKAGKVQLECLW SRV
Subjt:  GLNPPKAIEKLLKAGKVQLECLWGSRV

A0A5A7UNL0 DNA polymerase delta subunit 4

5.2e-50

80.31

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Query:  MASARGGMKDFYKQRKNGGITKANNKAPKPASRKTKSPANSATLGSGTTQPAALISHGSLDLQDEYGESENRVRQFDMNMTYGPCLGMTRMERWDRACNL
        MAS RGG+KDFYKQRK+ GI+KA  KA KP+SRKTKSPANSA+LGS   QPAAL+SHGSLDLQD+YGESEN +RQFDMNM YGPCLGMTRM RW+RAC+L
Subjt:  MASARGGMKDFYKQRKNGGITKANNKAPKPASRKTKSPANSATLGSGTTQPAALISHGSLDLQDEYGESENRVRQFDMNMTYGPCLGMTRMERWDRACNL

Query:  GLNPPKAIEKLLKAGKVQLECLWGSRV
        GLNPPK I  LLKAGKVQLECLW SRV
Subjt:  GLNPPKAIEKLLKAGKVQLECLWGSRV

A0A6J1H180 uncharacterized protein LOC111459143

2.0e-46

77.17

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Query:  MASARGGMKDFYKQRKNGGITKANNKAPKPASRKTKSPANSATLGSGTTQPAALISHGSLDLQDEYGESENRVRQFDMNMTYGPCLGMTRMERWDRACNL
        MASARGGMKDFYKQRKN G++K +    KP+SRKTKS ANSATL S   QPAALISHGSLDL+D+YGESEN +RQFDMNM YGPCLGMTRMERW+ A  L
Subjt:  MASARGGMKDFYKQRKNGGITKANNKAPKPASRKTKSPANSATLGSGTTQPAALISHGSLDLQDEYGESENRVRQFDMNMTYGPCLGMTRMERWDRACNL

Query:  GLNPPKAIEKLLKAGKVQLECLWGSRV
        GLNPPK IE LLK GKVQLECLW SR+
Subjt:  GLNPPKAIEKLLKAGKVQLECLWGSRV

A0A6J1K4T3 uncharacterized protein LOC111491182

5.0e-45

75.59

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Query:  MASARGGMKDFYKQRKNGGITKANNKAPKPASRKTKSPANSATLGSGTTQPAALISHGSLDLQDEYGESENRVRQFDMNMTYGPCLGMTRMERWDRACNL
        MASARGGMKDFYKQRKN G++K +    KP+S KTKS A+SATL S   QPAALISHGSLDL+D+YGESEN +RQFDMNM YGPCLGMTRMERW+ A  L
Subjt:  MASARGGMKDFYKQRKNGGITKANNKAPKPASRKTKSPANSATLGSGTTQPAALISHGSLDLQDEYGESENRVRQFDMNMTYGPCLGMTRMERWDRACNL

Query:  GLNPPKAIEKLLKAGKVQLECLWGSRV
        GLNPPK IE LLK GKVQLECLW SR+
Subjt:  GLNPPKAIEKLLKAGKVQLECLWGSRV

SwissProt top hits

e value

%identity

Alignment

O59835 DNA polymerase delta subunit 4

1.5e-06

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Query:  VRQFDMNMTYGPCLGMTRMERWDRACNLGLNPPKAIEKLL
        +  FD    YGP LGMTRM+RW RA N  LNPP+ + K+L
Subjt:  VRQFDMNMTYGPCLGMTRMERWDRACNLGLNPPKAIEKLL

Q3T0X9 DNA polymerase delta subunit 4

2.4e-07

44.44

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Query:  VRQFDMNMTYGPCLGMTRMERWDRACNLGLNPPKAIEKLLKA--GKVQLEC-LW
        +RQFD+   YGPC G+TR++RW RA  +GL PP  + ++L++  G  + +C LW
Subjt:  VRQFDMNMTYGPCLGMTRMERWDRACNLGLNPPKAIEKLLKA--GKVQLEC-LW

Q9CWP8 DNA polymerase delta subunit 4

1.2e-06

36.47

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Query:  PASRKTKSPANSATLGSGTTQPAALISHGSLDLQDEYGESENRVRQFDMNMTYGPCLGMTRMERWDRACNLGLNPPKAIEKLLKA
        P  +K + P      G    + A  +   +  L  E  E E  +RQFD+   YGPC G+TR++RW RA  +GL PP  + ++LKA
Subjt:  PASRKTKSPANSATLGSGTTQPAALISHGSLDLQDEYGESENRVRQFDMNMTYGPCLGMTRMERWDRACNLGLNPPKAIEKLLKA

Q9HCU8 DNA polymerase delta subunit 4

1.8e-07

42.19

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Query:  QDEYGESENRVRQFDMNMTYGPCLGMTRMERWDRACNLGLNPPKAIEKLLKA--GKVQLEC-LW
        +DE       +RQFD+   YGPC G+TR++RW RA  +GL PP  + ++LK   G  + +C LW
Subjt:  QDEYGESENRVRQFDMNMTYGPCLGMTRMERWDRACNLGLNPPKAIEKLLKA--GKVQLEC-LW

Arabidopsis top hits

e value

%identity

Alignment

AT1G09815.1 polymerase delta 4

2.5e-36

58.46

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Query:  MASARGGMKDFYKQRKN---GGITKANNKAPKPASRKTKSPANSATLGSGTTQPAALISHGSLDLQDEYGESENRVRQFDMNMTYGPCLGMTRMERWDRA
        MA+    +K FYKQ K+   GGI+K+     KP+SRK  +P ++A  GS  TQPAALISHGS+DL ++Y + E  +RQFDMN+TYGPCLGMTR++RW+RA
Subjt:  MASARGGMKDFYKQRKN---GGITKANNKAPKPASRKTKSPANSATLGSGTTQPAALISHGSLDLQDEYGESENRVRQFDMNMTYGPCLGMTRMERWDRA

Query:  CNLGLNPPKAIEKLLKAGKVQLECLWGSRV
          LG+NPP  IEKLLK GKVQ +CLW  RV
Subjt:  CNLGLNPPKAIEKLLKAGKVQLECLWGSRV

Sequences

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CDS sequence

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ATGGCGTCTGCTCGAGGAGGGATGAAAGATTTCTACAAGCAAAGGAAAAATGGCGGAATCACCAAAGCCAACAACAAGGCTCCAAAGCCAGCTTCCAGAAAAACC
AAATCTCCGGCCAACTCTGCCACTCTGGGCTCCGGTACCACCCAACCGGCGGCTCTCATTTCTCACGGCTCCCTCGATCTTCAAGATGAATATGGCGAGTCAGAG
AACAGGGTGAGGCAATTTGACATGAACATGACCTATGGACCTTGCCTCGGAATGACCAGAATGGAACGATGGGATCGTGCCTGTAATCTTGGTTTGAACCCTCCA
AAAGCGATCGAAAAACTCTTGAAGGCTGGGAAAGTGCAGTTAGAGTGCTTGTGGGGTTCCCGAGTTTGA

mRNA sequence

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TCAAAATTTGAAAAGCGATCAGAAAAGAGAGAAAAATGGCGTCTGCTCGAGGAGGGATGAAAGATTTCTACAAGCAAAGGAAAAATGGCGGAATCACCAAAGCCA
ACAACAAGGCTCCAAAGCCAGCTTCCAGAAAAACCAAATCTCCGGCCAACTCTGCCACTCTGGGCTCCGGTACCACCCAACCGGCGGCTCTCATTTCTCACGGCT
CCCTCGATCTTCAAGATGAATATGGCGAGTCAGAGAACAGGGTGAGGCAATTTGACATGAACATGACCTATGGACCTTGCCTCGGAATGACCAGAATGGAACGAT
GGGATCGTGCCTGTAATCTTGGTTTGAACCCTCCAAAAGCGATCGAAAAACTCTTGAAGGCTGGGAAAGTGCAGTTAGAGTGCTTGTGGGGTTCCCGAGTTTGAA
GACTGTGAAGTAAGCTGTGTTGTCTTTGGTTAATGTATGAAGTGTATGCTATGATGTGCTGTTTTTTGTTAACGTATGGAGTGTATGCTGTGTTTTTGGACAAAA
TGTTCAACCTCTGGCTGAAATGACAATCACTTTCCTTAAAGATGTGAATGAACGAGATGTTTACTGACTTTTCAGTTATGTGTTGCAAACCTCTATCAAGCACTT
GTATACTTAAATTTGGTGATCTTTTCCCTTTAACTTAACTTTGTCTTATTTCTGAAA

Protein sequence

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MASARGGMKDFYKQRKNGGITKANNKAPKPASRKTKSPANSATLGSGTTQPAALISHGSLDLQDEYGESENRVRQFDMNMTYGPCLGMTRMERWDRACNLGLNPP
KAIEKLLKAGKVQLECLWGSRV

Sed0009591 (gene) of Chayote v1 genome