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Sed0009616 (gene) of Chayote v1 genome

Gene IDSed0009616
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG04:29247424..29247876
RNA-Seq ExpressionSed0009616
SyntenySed0009616
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR40694.1 hypothetical protein CICLE_v10027161mg, partial [Citrus clementina]5.8e-1031.54Show/hide
Query:  WISPIGDIVKVNVDAAICSQEGRTGIRVIAQNSYGDCMFPFCKPIIGDLVVEAAEVVAVRDGIMMTWELGFRRVELETDNQAVALMLQSRSFGGTEVGGI
        W SP     KVNVDAA+ S E R GI V+  NS G+ M      +I    +E  E VAV +G+ +  ++G     +E+D+  V  ++ ++     EVG +
Subjt:  WISPIGDIVKVNVDAAICSQEGRTGIRVIAQNSYGDCMFPFCKPIIGDLVVEAAEVVAVRDGIMMTWELGFRRVELETDNQAVALMLQSRSFGGTEVGGI

Query:  I-DESLIFAARFLSVSSSWCNRQANSLAQSLSKMAAMENLNIYVMEDVP
        I D   + ++   S    +  R  N +A  LSK+A   ++    +E+VP
Subjt:  I-DESLIFAARFLSVSSSWCNRQANSLAQSLSKMAAMENLNIYVMEDVP

XP_021807757.1 uncharacterized protein LOC110751579 [Prunus avium]2.2e-0929.14Show/hide
Query:  WISPIGDIVKVNVDAAICSQEGRTGIRVIAQNSYGDCMFPFCKPIIGDLVVEAAEVVAVRDGIMMTWELGFRRVELETD--NQAVALMLQSRSFGGTEVG
        W  P    +K+NVD A  +   + G+  + +N +GD M     PI G    +  E++A+R+G+  TWE G+  + +ETD  N    ++  + +FG    G
Subjt:  WISPIGDIVKVNVDAAICSQEGRTGIRVIAQNSYGDCMFPFCKPIIGDLVVEAAEVVAVRDGIMMTWELGFRRVELETD--NQAVALMLQSRSFGGTEVG

Query:  GIIDESLIFAARFLSVSSSWCNRQANSLAQSLSKMA-AMENLNIYVMEDVP
        GII++  + +  F S+S  +  R  N++A  L+K A    ++++++ E  P
Subjt:  GIIDESLIFAARFLSVSSSWCNRQANSLAQSLSKMA-AMENLNIYVMEDVP

XP_023927486.1 uncharacterized protein LOC112038880 [Quercus suber]8.9e-1131.76Show/hide
Query:  WISPIGDIVKVNVDAAICSQEGRTGIRVIAQNSYGDCMFPFCKPIIGDLVVEAAEVVAVRDGIMMTWELGFRRVELETDNQAVALMLQSRSFGGTEVGGI
        W  P    VKVN D A+ SQ+G  GI VI +N  G  M    + I     VE  EV+A R  ++   ELGF +VELE D+++V   +       + +G +
Subjt:  WISPIGDIVKVNVDAAICSQEGRTGIRVIAQNSYGDCMFPFCKPIIGDLVVEAAEVVAVRDGIMMTWELGFRRVELETDNQAVALMLQSRSFGGTEVGGI

Query:  IDESLIFAARFLSVSSSWCNRQANSLAQSLSKMAAMENLNIYVMEDVP
        + +     + F  +S     R+ N +A  L++ A      ++ ME VP
Subjt:  IDESLIFAARFLSVSSSWCNRQANSLAQSLSKMAAMENLNIYVMEDVP

XP_030945916.1 uncharacterized protein LOC115970418 [Quercus lobata]1.2e-1030.41Show/hide
Query:  WISPIGDIVKVNVDAAICSQEGRTGIRVIAQNSYGDCMFPFCKPIIGDLVVEAAEVVAVRDGIMMTWELGFRRVELETDNQAVALMLQSRSFGGTEVGGI
        W  P+G+  K N D A+ S+ G  GI V+ +N+ G+ +    + I+    VE  E +A R  +    ELGF   E E D++ V   L+S   G + +G I
Subjt:  WISPIGDIVKVNVDAAICSQEGRTGIRVIAQNSYGDCMFPFCKPIIGDLVVEAAEVVAVRDGIMMTWELGFRRVELETDNQAVALMLQSRSFGGTEVGGI

Query:  IDESLIFAARFLSVSSSWCNRQANSLAQSLSKMAAMENLNIYVMEDVP
        + + +         S S   RQ N +A +L++ A +    +  ME VP
Subjt:  IDESLIFAARFLSVSSSWCNRQANSLAQSLSKMAAMENLNIYVMEDVP

XP_030946032.1 uncharacterized protein LOC115970553 [Quercus lobata]1.7e-0929.05Show/hide
Query:  WISPIGDIVKVNVDAAICSQEGRTGIRVIAQNSYGDCMFPFCKPIIGDLVVEAAEVVAVRDGIMMTWELGFRRVELETDNQAVALMLQSRSFGGTEVGGI
        W  P+G+  K N D A+ S+ G  GI V+ +N+ G+ +    + I+    VE  E +A R  +    ELG    + E D + V   L+S   G + +G I
Subjt:  WISPIGDIVKVNVDAAICSQEGRTGIRVIAQNSYGDCMFPFCKPIIGDLVVEAAEVVAVRDGIMMTWELGFRRVELETDNQAVALMLQSRSFGGTEVGGI

Query:  IDESLIFAARFLSVSSSWCNRQANSLAQSLSKMAAMENLNIYVMEDVP
        + + +         S S   RQ N +A +L++ A +    +  ME VP
Subjt:  IDESLIFAARFLSVSSSWCNRQANSLAQSLSKMAAMENLNIYVMEDVP

TrEMBL top hitse value%identityAlignment
A0A2N9FBQ4 Reverse transcriptase domain-containing protein1.9e-1133.11Show/hide
Query:  WISPIGDIVKVNVDAAICSQEGRTGIRVIAQNSYGDCMFPFCKPIIGDLVVEAAEVVAVRDGIMMTWELGFRRVELETDNQAVALMLQSRSFGGTEVGGI
        W  P    VK+N D A+ ++ G  G+ VI +NS G  M    + I+    VEA E +A R  + +  +LGF+ VELE D+  +   L       T  G I
Subjt:  WISPIGDIVKVNVDAAICSQEGRTGIRVIAQNSYGDCMFPFCKPIIGDLVVEAAEVVAVRDGIMMTWELGFRRVELETDNQAVALMLQSRSFGGTEVGGI

Query:  IDESLIFAARFLSVSSSWCNRQANSLAQSLSKMAAMENLNIYVMEDVP
        I+++ + + R  SV     NR+ N +A SL++ A         ME VP
Subjt:  IDESLIFAARFLSVSSSWCNRQANSLAQSLSKMAAMENLNIYVMEDVP

A0A2N9HE46 Uncharacterized protein1.9e-1133.11Show/hide
Query:  WISPIGDIVKVNVDAAICSQEGRTGIRVIAQNSYGDCMFPFCKPIIGDLVVEAAEVVAVRDGIMMTWELGFRRVELETDNQAVALMLQSRSFGGTEVGGI
        W  P    VK+N D A+ ++ G  G+ VI +NS G  M    + I+    VEA E +A R  + +  +LGF+ VELE D+  +   L       T  G I
Subjt:  WISPIGDIVKVNVDAAICSQEGRTGIRVIAQNSYGDCMFPFCKPIIGDLVVEAAEVVAVRDGIMMTWELGFRRVELETDNQAVALMLQSRSFGGTEVGGI

Query:  IDESLIFAARFLSVSSSWCNRQANSLAQSLSKMAAMENLNIYVMEDVP
        I+++ + + R  SV     NR+ N +A SL++ A         ME VP
Subjt:  IDESLIFAARFLSVSSSWCNRQANSLAQSLSKMAAMENLNIYVMEDVP

A0A6P5RZ31 uncharacterized protein LOC1107515791.1e-0929.14Show/hide
Query:  WISPIGDIVKVNVDAAICSQEGRTGIRVIAQNSYGDCMFPFCKPIIGDLVVEAAEVVAVRDGIMMTWELGFRRVELETD--NQAVALMLQSRSFGGTEVG
        W  P    +K+NVD A  +   + G+  + +N +GD M     PI G    +  E++A+R+G+  TWE G+  + +ETD  N    ++  + +FG    G
Subjt:  WISPIGDIVKVNVDAAICSQEGRTGIRVIAQNSYGDCMFPFCKPIIGDLVVEAAEVVAVRDGIMMTWELGFRRVELETD--NQAVALMLQSRSFGGTEVG

Query:  GIIDESLIFAARFLSVSSSWCNRQANSLAQSLSKMA-AMENLNIYVMEDVP
        GII++  + +  F S+S  +  R  N++A  L+K A    ++++++ E  P
Subjt:  GIIDESLIFAARFLSVSSSWCNRQANSLAQSLSKMA-AMENLNIYVMEDVP

A0A7C9B183 RNase H domain-containing protein8.1e-1032.84Show/hide
Query:  WISPIGDIVKVNVDAAICSQEGRTGIRVIAQNSYGDCMFPFCKPIIGDLVVEAAEVVAVRDGIMMTWELGFRRVELETDNQAVALMLQSRSFGGTEVGGI
        W  P G  +K NVDA+   ++   G+ VI +NS GD M    K    D  V+  E  AV  G+ + WE G+ R+E+E D++ VA  L  R          
Subjt:  WISPIGDIVKVNVDAAICSQEGRTGIRVIAQNSYGDCMFPFCKPIIGDLVVEAAEVVAVRDGIMMTWELGFRRVELETDNQAVALMLQSRSFGGTEVGGI

Query:  IDESLIFAARFLSVSSSWCNRQANSLAQSLSKMA
        I ++    + F+++S S   R AN +A  L+++A
Subjt:  IDESLIFAARFLSVSSSWCNRQANSLAQSLSKMA

V4UMR3 RNase H domain-containing protein (Fragment)2.8e-1031.54Show/hide
Query:  WISPIGDIVKVNVDAAICSQEGRTGIRVIAQNSYGDCMFPFCKPIIGDLVVEAAEVVAVRDGIMMTWELGFRRVELETDNQAVALMLQSRSFGGTEVGGI
        W SP     KVNVDAA+ S E R GI V+  NS G+ M      +I    +E  E VAV +G+ +  ++G     +E+D+  V  ++ ++     EVG +
Subjt:  WISPIGDIVKVNVDAAICSQEGRTGIRVIAQNSYGDCMFPFCKPIIGDLVVEAAEVVAVRDGIMMTWELGFRRVELETDNQAVALMLQSRSFGGTEVGGI

Query:  I-DESLIFAARFLSVSSSWCNRQANSLAQSLSKMAAMENLNIYVMEDVP
        I D   + ++   S    +  R  N +A  LSK+A   ++    +E+VP
Subjt:  I-DESLIFAARFLSVSSSWCNRQANSLAQSLSKMAAMENLNIYVMEDVP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G23320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.8e-0927.14Show/hide
Query:  WISPIGDIVKVNVDAAICSQEGRTGIRVIAQNSYGDCMFPFCKPIIGDLVVEAAEVVAVRDGIMMTWELGFRRVELETDNQAVALMLQSRSFGGTEVGGI
        W  P  + VK N D +  +    +G+R I +NS G C+   C    G   ++ AE  A+   I   W+LG+RRVE E DN  V  +++++      +   
Subjt:  WISPIGDIVKVNVDAAICSQEGRTGIRVIAQNSYGDCMFPFCKPIIGDLVVEAAEVVAVRDGIMMTWELGFRRVELETDNQAVALMLQSRSFGGTEVGGI

Query:  IDESLIFAARFLSVSSSWCNRQANSLAQSLSKMAAMENLN
        ++    ++  F +V  ++ +R+ N     L+K A   ++N
Subjt:  IDESLIFAARFLSVSSSWCNRQANSLAQSLSKMAAMENLN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTGGATCTCGCCTATTGGTGATATAGTTAAAGTTAATGTTGATGCAGCAATTTGTAGTCAGGAGGGAAGGACTGGAATCAGGGTAATCGCACAAAATTCTTATGG
GGATTGTATGTTTCCTTTTTGCAAACCTATCATTGGGGACTTAGTTGTTGAAGCTGCAGAAGTTGTGGCTGTTCGTGATGGAATTATGATGACGTGGGAGTTGGGGTTCA
GACGGGTTGAGTTGGAAACTGATAATCAAGCGGTTGCCCTAATGCTTCAATCACGATCTTTTGGGGGAACGGAGGTGGGGGGGATTATTGATGAATCTTTGATTTTTGCA
GCGAGGTTCCTCTCTGTGTCCTCTTCTTGGTGTAATCGTCAAGCAAATTCATTGGCTCAATCTCTCTCGAAGATGGCTGCGATGGAAAATTTGAATATTTATGTGATGGA
GGACGTTCCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTGGATCTCGCCTATTGGTGATATAGTTAAAGTTAATGTTGATGCAGCAATTTGTAGTCAGGAGGGAAGGACTGGAATCAGGGTAATCGCACAAAATTCTTATGG
GGATTGTATGTTTCCTTTTTGCAAACCTATCATTGGGGACTTAGTTGTTGAAGCTGCAGAAGTTGTGGCTGTTCGTGATGGAATTATGATGACGTGGGAGTTGGGGTTCA
GACGGGTTGAGTTGGAAACTGATAATCAAGCGGTTGCCCTAATGCTTCAATCACGATCTTTTGGGGGAACGGAGGTGGGGGGGATTATTGATGAATCTTTGATTTTTGCA
GCGAGGTTCCTCTCTGTGTCCTCTTCTTGGTGTAATCGTCAAGCAAATTCATTGGCTCAATCTCTCTCGAAGATGGCTGCGATGGAAAATTTGAATATTTATGTGATGGA
GGACGTTCCATAA
Protein sequenceShow/hide protein sequence
MGWISPIGDIVKVNVDAAICSQEGRTGIRVIAQNSYGDCMFPFCKPIIGDLVVEAAEVVAVRDGIMMTWELGFRRVELETDNQAVALMLQSRSFGGTEVGGIIDESLIFA
ARFLSVSSSWCNRQANSLAQSLSKMAAMENLNIYVMEDVP