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Sed0009621 (gene) of Chayote v1 genome

Gene IDSed0009621
OrganismSechium edule (Chayote v1)
Descriptionarabinogalactan peptide 22-like
Genome locationLG13:558863..560396
RNA-Seq ExpressionSed0009621
SyntenySed0009621
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK03143.1 arabinogalactan peptide 22 [Cucumis melo var. makuwa]6.8e-1679.1Show/hide
Query:  MAVWRA-CFGIY-VVIFAVFYVVTLPLSAAQLSSSPAPAPTSDGTTIDQGIAYILMLLALLLTYIIH
        MAV RA CFGIY  V+ AVFYV+ LP+S+A+LSSSPAPAPTSDGTTIDQGIAY+LML+AL+LTYIIH
Subjt:  MAVWRA-CFGIY-VVIFAVFYVVTLPLSAAQLSSSPAPAPTSDGTTIDQGIAYILMLLALLLTYIIH

XP_022945187.1 arabinogalactan peptide 22-like [Cucurbita moschata]2.8e-1781.54Show/hide
Query:  MAVWRACFGIYVVIFAVFYVVTLPLSAAQLSSSPAPAPTSDGTTIDQGIAYILMLLALLLTYIIH
        MAV RACFGIY VI A+FYVV LP+S A+ +SSPAPAPTSDGT IDQGIAYILMLLAL LTYIIH
Subjt:  MAVWRACFGIYVVIFAVFYVVTLPLSAAQLSSSPAPAPTSDGTTIDQGIAYILMLLALLLTYIIH

XP_022968216.1 arabinogalactan peptide 22-like isoform X1 [Cucurbita maxima]4.7e-1773.33Show/hide
Query:  FGFCLETEMAVWRACFGIYVVIFAVFYVVTLPLSAAQLSSS--PAPAPTSDGTTIDQGIAYILMLLALLLTYIIH
        FG   E EMA  RACFG+Y VI A+FYVV LP+S A+ +SS  PAPAPTSDGT IDQGIAYILMLLAL LTYIIH
Subjt:  FGFCLETEMAVWRACFGIYVVIFAVFYVVTLPLSAAQLSSS--PAPAPTSDGTTIDQGIAYILMLLALLLTYIIH

XP_022968217.1 arabinogalactan peptide 22-like isoform X2 [Cucurbita maxima]4.7e-1773.33Show/hide
Query:  FGFCLETEMAVWRACFGIYVVIFAVFYVVTLPLSAAQLSSS--PAPAPTSDGTTIDQGIAYILMLLALLLTYIIH
        FG   E EMA  RACFG+Y VI A+FYVV LP+S A+ +SS  PAPAPTSDGT IDQGIAYILMLLAL LTYIIH
Subjt:  FGFCLETEMAVWRACFGIYVVIFAVFYVVTLPLSAAQLSSS--PAPAPTSDGTTIDQGIAYILMLLALLLTYIIH

XP_038898060.1 arabinogalactan protein 41-like [Benincasa hispida]5.6e-1883.33Show/hide
Query:  MAVWRACFGIY-VVIFAVFYVVTLPLSAAQLSSSPAPAPTSDGTTIDQGIAYILMLLALLLTYIIH
        MAV +ACFGIY  VI AVFYVVTLP+SAA+ SSSPAPAPTSDGTTIDQGIAY+LML+AL+LTYIIH
Subjt:  MAVWRACFGIY-VVIFAVFYVVTLPLSAAQLSSSPAPAPTSDGTTIDQGIAYILMLLALLLTYIIH

TrEMBL top hitse value%identityAlignment
A0A5D3BTZ5 Arabinogalactan peptide 223.3e-1679.1Show/hide
Query:  MAVWRA-CFGIY-VVIFAVFYVVTLPLSAAQLSSSPAPAPTSDGTTIDQGIAYILMLLALLLTYIIH
        MAV RA CFGIY  V+ AVFYV+ LP+S+A+LSSSPAPAPTSDGTTIDQGIAY+LML+AL+LTYIIH
Subjt:  MAVWRA-CFGIY-VVIFAVFYVVTLPLSAAQLSSSPAPAPTSDGTTIDQGIAYILMLLALLLTYIIH

A0A6J1CHE0 arabinogalactan peptide 22-like4.3e-1676.92Show/hide
Query:  MAVWRACFGIYVVIFAVFYVVTLPLSAAQLSSSPAPAPTSDGTTIDQGIAYILMLLALLLTYIIH
        MAV RACFGIY  I A+ +V+ LP+S A+ SSSPAPAP+SDGTTIDQGIAYILMLLAL+LTYIIH
Subjt:  MAVWRACFGIYVVIFAVFYVVTLPLSAAQLSSSPAPAPTSDGTTIDQGIAYILMLLALLLTYIIH

A0A6J1G081 arabinogalactan peptide 22-like1.3e-1781.54Show/hide
Query:  MAVWRACFGIYVVIFAVFYVVTLPLSAAQLSSSPAPAPTSDGTTIDQGIAYILMLLALLLTYIIH
        MAV RACFGIY VI A+FYVV LP+S A+ +SSPAPAPTSDGT IDQGIAYILMLLAL LTYIIH
Subjt:  MAVWRACFGIYVVIFAVFYVVTLPLSAAQLSSSPAPAPTSDGTTIDQGIAYILMLLALLLTYIIH

A0A6J1HT15 arabinogalactan peptide 22-like isoform X22.3e-1773.33Show/hide
Query:  FGFCLETEMAVWRACFGIYVVIFAVFYVVTLPLSAAQLSSS--PAPAPTSDGTTIDQGIAYILMLLALLLTYIIH
        FG   E EMA  RACFG+Y VI A+FYVV LP+S A+ +SS  PAPAPTSDGT IDQGIAYILMLLAL LTYIIH
Subjt:  FGFCLETEMAVWRACFGIYVVIFAVFYVVTLPLSAAQLSSS--PAPAPTSDGTTIDQGIAYILMLLALLLTYIIH

A0A6J1HU96 arabinogalactan peptide 22-like isoform X12.3e-1773.33Show/hide
Query:  FGFCLETEMAVWRACFGIYVVIFAVFYVVTLPLSAAQLSSS--PAPAPTSDGTTIDQGIAYILMLLALLLTYIIH
        FG   E EMA  RACFG+Y VI A+FYVV LP+S A+ +SS  PAPAPTSDGT IDQGIAYILMLLAL LTYIIH
Subjt:  FGFCLETEMAVWRACFGIYVVIFAVFYVVTLPLSAAQLSSS--PAPAPTSDGTTIDQGIAYILMLLALLLTYIIH

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 163.7e-0963.46Show/hide
Query:  IFAVFYVVTLPLSAAQLSSSPAPAPTSDGTTIDQGIAYILMLLALLLTYIIH
        +F+  + V L L+ AQ S +PAPAPTSDGT+IDQGIAY+LM++AL+LTY+IH
Subjt:  IFAVFYVVTLPLSAAQLSSSPAPAPTSDGTTIDQGIAYILMLLALLLTYIIH

Q8L9T8 Arabinogalactan protein 413.1e-1159.02Show/hide
Query:  RACFGIYVVIFAVFYVVTLPLSAAQLSSSPAPAPTSDGTTIDQGIAYILMLLALLLTYIIH
        R  FG+  ++ ++ + + LP++ AQ S++PAPAPTSDGTTIDQGIAY+LML+AL+LTY+IH
Subjt:  RACFGIYVVIFAVFYVVTLPLSAAQLSSSPAPAPTSDGTTIDQGIAYILMLLALLLTYIIH

Q9FK16 Arabinogalactan protein 225.8e-1061.11Show/hide
Query:  VVIFAVFYVVTLPLSAAQLSSSPAPAPTSDGTTIDQGIAYILMLLALLLTYIIH
        + +F +  V+ LP++ +  SSSPAPAPTSDGT+IDQGIAY+LM++AL LTY IH
Subjt:  VVIFAVFYVVTLPLSAAQLSSSPAPAPTSDGTTIDQGIAYILMLLALLLTYIIH

Q9M373 Arabinogalactan protein 203.7e-0959.26Show/hide
Query:  VVIFAVFYVVTLPLSAAQLSSSPAPAPTSDGTTIDQGIAYILMLLALLLTYIIH
        + +FA  + V  P + AQ S +PAP+PTSDGT+IDQGIAY+LM++AL+LTY+IH
Subjt:  VVIFAVFYVVTLPLSAAQLSSSPAPAPTSDGTTIDQGIAYILMLLALLLTYIIH

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 162.7e-1063.46Show/hide
Query:  IFAVFYVVTLPLSAAQLSSSPAPAPTSDGTTIDQGIAYILMLLALLLTYIIH
        +F+  + V L L+ AQ S +PAPAPTSDGT+IDQGIAY+LM++AL+LTY+IH
Subjt:  IFAVFYVVTLPLSAAQLSSSPAPAPTSDGTTIDQGIAYILMLLALLLTYIIH

AT3G61640.1 arabinogalactan protein 202.7e-1059.26Show/hide
Query:  VVIFAVFYVVTLPLSAAQLSSSPAPAPTSDGTTIDQGIAYILMLLALLLTYIIH
        + +FA  + V  P + AQ S +PAP+PTSDGT+IDQGIAY+LM++AL+LTY+IH
Subjt:  VVIFAVFYVVTLPLSAAQLSSSPAPAPTSDGTTIDQGIAYILMLLALLLTYIIH

AT5G24105.1 arabinogalactan protein 412.2e-1259.02Show/hide
Query:  RACFGIYVVIFAVFYVVTLPLSAAQLSSSPAPAPTSDGTTIDQGIAYILMLLALLLTYIIH
        R  FG+  ++ ++ + + LP++ AQ S++PAPAPTSDGTTIDQGIAY+LML+AL+LTY+IH
Subjt:  RACFGIYVVIFAVFYVVTLPLSAAQLSSSPAPAPTSDGTTIDQGIAYILMLLALLLTYIIH

AT5G53250.1 arabinogalactan protein 224.1e-1161.11Show/hide
Query:  VVIFAVFYVVTLPLSAAQLSSSPAPAPTSDGTTIDQGIAYILMLLALLLTYIIH
        + +F +  V+ LP++ +  SSSPAPAPTSDGT+IDQGIAY+LM++AL LTY IH
Subjt:  VVIFAVFYVVTLPLSAAQLSSSPAPAPTSDGTTIDQGIAYILMLLALLLTYIIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTTGCTTGGATTCCCAAAACTTTCTGTTCAAACCCAAATACAAATAGTATTAAACCCAATTAAATCCTTCCATGTTCAATCCACATTCAAGTTCTTCAATTTTCT
TCTGTTTGGGTTCTGTTTAGAGACAGAGATGGCTGTTTGGAGGGCATGTTTTGGAATTTATGTTGTGATTTTTGCTGTCTTTTATGTTGTAACTTTGCCTTTATCTGCAG
CTCAACTTTCATCCTCTCCAGCTCCAGCTCCCACTAGTGATGGCACCACAATAGACCAAGGCATAGCTTACATTCTAATGCTGCTAGCTTTACTGCTCACATATATAATC
CATTGA
mRNA sequenceShow/hide mRNA sequence
CAAAAATAGGGAATATAGTGGCAAAGGGGTGGGGGTTCAAGCAGAGAGTAAGAAACAAGCCAAGAACCAGCTTACACAGTCTGTCTTTTGGTAAAGTTAATGAAGATCCA
GCAAAGCAAAAGGCATAAAAAAAAGAAAAAAAAGAAAGAATCTTTTGAAAAGAGAATGATGAAATCACATGGGTTTGCTTGGATTCCCAAAACTTTCTGTTCAAACCCAA
ATACAAATAGTATTAAACCCAATTAAATCCTTCCATGTTCAATCCACATTCAAGTTCTTCAATTTTCTTCTGTTTGGGTTCTGTTTAGAGACAGAGATGGCTGTTTGGAG
GGCATGTTTTGGAATTTATGTTGTGATTTTTGCTGTCTTTTATGTTGTAACTTTGCCTTTATCTGCAGCTCAACTTTCATCCTCTCCAGCTCCAGCTCCCACTAGTGATG
GCACCACAATAGACCAAGGCATAGCTTACATTCTAATGCTGCTAGCTTTACTGCTCACATATATAATCCATTGATGCAACTTTTCAAAGCAAAAACAGAGGAAAAATATT
CAAATATTTTACATTTAATAATTCAATTTATGTGTATGAGATGAAAGGAAAAGGGTGTGGTGTTTCAAATGGCTATTGCCTTTATTTTTTACTTCATTTGTAGAAAGTTT
GTTGTGTTATATATTTATCATTCTTTTTCTCAAGTTATGATCATTATTTTCATATGTGCATTACAATAAATCTTCGATTATTCTTGAGGGGTGGCACAATTGGTTAAAGT
AAGGTATGCTCTTTTTGAGATCGTA
Protein sequenceShow/hide protein sequence
MGLLGFPKLSVQTQIQIVLNPIKSFHVQSTFKFFNFLLFGFCLETEMAVWRACFGIYVVIFAVFYVVTLPLSAAQLSSSPAPAPTSDGTTIDQGIAYILMLLALLLTYII
H