; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0009623 (gene) of Chayote v1 genome

Gene IDSed0009623
OrganismSechium edule (Chayote v1)
DescriptionGlycine-rich RNA-binding protein 3
Genome locationLG01:3855497..3857613
RNA-Seq ExpressionSed0009623
SyntenySed0009623
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570903.1 Glycine-rich RNA-binding protein 4, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]5.4e-5481.38Show/hide
Query:  MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSE---SSSSAPLPSPSPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFT
        M+  NTLM L ARRA +TN Q P  SFRCFCS+   SSSSAP  SPS  NNKLFVAGLSWS+DERSLKDAFSSFGEV EVRI+YDKDSGRSRGFGFVNFT
Subjt:  MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSE---SSSSAPLPSPSPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFT

Query:  NDDDAQCAKDAMDGKALLGRPLRISFALDKVRGGPVVVPRLSHID
        N+DDAQ AKDAMDGKALLGRPLRISFALDKVRGGPVV+PRLS+I+
Subjt:  NDDDAQCAKDAMDGKALLGRPLRISFALDKVRGGPVVVPRLSHID

XP_022140496.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Momordica charantia]2.7e-5381.38Show/hide
Query:  MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSESSSSAPLPSPSPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDD
        M+ TNT  ML+ARR V+TN Q+ T    CFCS+SSSS    SPS  NNKLFVAGLSWSMDERSLKDAFSSFGEV EVRIVYDKDSGRSRGFGFVNFTN+D
Subjt:  MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSESSSSAPLPSPSPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDD

Query:  DAQCAKDAMDGKALLGRPLRISFALDKVRGGPVVVPRLSHIDNNV
        DAQCAKDAMDGKALLGRPLRISFALDKVRGGPVVVPRLS++ N V
Subjt:  DAQCAKDAMDGKALLGRPLRISFALDKVRGGPVVVPRLSHIDNNV

XP_022944150.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita moschata]1.2e-5380.69Show/hide
Query:  MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSESS---SSAPLPSPSPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFT
        M+  N L ML+ARRA +TN Q P  SFRCFCS+SS   SSAP  SPS  NNKLFVAGLSWS+DERSLKDAFSSFGEV EVRI+YDKDSGRSRGFGFVNFT
Subjt:  MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSESS---SSAPLPSPSPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFT

Query:  NDDDAQCAKDAMDGKALLGRPLRISFALDKVRGGPVVVPRLSHID
        N+DDAQ AKDAMDGKALLGRPLRISFALDKVRGGPVV+PRLS+I+
Subjt:  NDDDAQCAKDAMDGKALLGRPLRISFALDKVRGGPVVVPRLSHID

XP_022986397.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima]1.9e-5481.51Show/hide
Query:  MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSESS---SSAPLPSPSPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFT
        M+  N L ML+ARRA +TN Q P  SFRCFCS+SS   SSAP  SPS  NNKLFVAGLSWS+DERSLKDAFSSFGEV EVRI+YDKDSGRSRGFGFVNFT
Subjt:  MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSESS---SSAPLPSPSPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFT

Query:  NDDDAQCAKDAMDGKALLGRPLRISFALDKVRGGPVVVPRLSHIDN
        N+DDAQ AKDAMDGKALLGRPLRISFALDKVRGGPVVVPRLS+I+N
Subjt:  NDDDAQCAKDAMDGKALLGRPLRISFALDKVRGGPVVVPRLSHIDN

XP_023512965.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pepo]1.9e-5480.14Show/hide
Query:  MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSE---SSSSAPLPSPSPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFT
        M+ TNTLM L   R  +TN Q P  SFRCFCS+   SSSSAP  SPS  NNKLFVAGLSWS+DERSLKDAFSS+GEV EVRI+YDKDSGRSRGFGFVNFT
Subjt:  MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSE---SSSSAPLPSPSPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFT

Query:  NDDDAQCAKDAMDGKALLGRPLRISFALDKVRGGPVVVPRLSHIDN
        N+DDAQ AKDAMDGKALLGRPLRISFALDKVRGGPVVVPRLS+I+N
Subjt:  NDDDAQCAKDAMDGKALLGRPLRISFALDKVRGGPVVVPRLSHIDN

TrEMBL top hitse value%identityAlignment
A0A0A0LQB7 RRM domain-containing protein3.8e-5375.64Show/hide
Query:  MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSESSSSAPLPSPSPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDD
        M+ TNT  +L+AR+A +TN Q P   FRCFCS+S+S  PL S    NNKLFVAGLSWSMDERSLKDAFSSFGEV EVRIVYDKDSGRSRGFGFVNF N +
Subjt:  MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSESSSSAPLPSPSPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDD

Query:  DAQCAKDAMDGKALLGRPLRISFALDKVRGGPVVVPRLSHIDNNVNTGQVGNQHYE
        DAQCAKDAMDGKA+LGRPLRISFALDKVRG PVVVPRLS+I+N V   + GNQ YE
Subjt:  DAQCAKDAMDGKALLGRPLRISFALDKVRGGPVVVPRLSHIDNNVNTGQVGNQHYE

A0A1S3C2R4 glycine-rich RNA-binding protein 3, mitochondrial3.5e-5176.55Show/hide
Query:  MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSESSSSAPLPSPSPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDD
        M+ TNTL +L+AR+A +TN Q P  +FRCFCS+ S+SA   SPS  +NKLFVAGLSWSMDERSLKDAFSSFGEV EVRIVYDKDSGRSRGFGFV+F N++
Subjt:  MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSESSSSAPLPSPSPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDD

Query:  DAQCAKDAMDGKALLGRPLRISFALDKVRGGPVVVPRLSHIDNNV
        DAQCAKDAMDGKA+LGRPL+ISFAL+KVRGGPV VPRLS+I+N V
Subjt:  DAQCAKDAMDGKALLGRPLRISFALDKVRGGPVVVPRLSHIDNNV

A0A6J1CG90 glycine-rich RNA-binding protein 4, mitochondrial-like1.3e-5381.38Show/hide
Query:  MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSESSSSAPLPSPSPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDD
        M+ TNT  ML+ARR V+TN Q+ T    CFCS+SSSS    SPS  NNKLFVAGLSWSMDERSLKDAFSSFGEV EVRIVYDKDSGRSRGFGFVNFTN+D
Subjt:  MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSESSSSAPLPSPSPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDD

Query:  DAQCAKDAMDGKALLGRPLRISFALDKVRGGPVVVPRLSHIDNNV
        DAQCAKDAMDGKALLGRPLRISFALDKVRGGPVVVPRLS++ N V
Subjt:  DAQCAKDAMDGKALLGRPLRISFALDKVRGGPVVVPRLSHIDNNV

A0A6J1FYH8 glycine-rich RNA-binding protein 4, mitochondrial-like5.8e-5480.69Show/hide
Query:  MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSESS---SSAPLPSPSPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFT
        M+  N L ML+ARRA +TN Q P  SFRCFCS+SS   SSAP  SPS  NNKLFVAGLSWS+DERSLKDAFSSFGEV EVRI+YDKDSGRSRGFGFVNFT
Subjt:  MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSESS---SSAPLPSPSPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFT

Query:  NDDDAQCAKDAMDGKALLGRPLRISFALDKVRGGPVVVPRLSHID
        N+DDAQ AKDAMDGKALLGRPLRISFALDKVRGGPVV+PRLS+I+
Subjt:  NDDDAQCAKDAMDGKALLGRPLRISFALDKVRGGPVVVPRLSHID

A0A6J1J7F1 glycine-rich RNA-binding protein 4, mitochondrial-like9.0e-5581.51Show/hide
Query:  MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSESS---SSAPLPSPSPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFT
        M+  N L ML+ARRA +TN Q P  SFRCFCS+SS   SSAP  SPS  NNKLFVAGLSWS+DERSLKDAFSSFGEV EVRI+YDKDSGRSRGFGFVNFT
Subjt:  MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSESS---SSAPLPSPSPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFT

Query:  NDDDAQCAKDAMDGKALLGRPLRISFALDKVRGGPVVVPRLSHIDN
        N+DDAQ AKDAMDGKALLGRPLRISFALDKVRGGPVVVPRLS+I+N
Subjt:  NDDDAQCAKDAMDGKALLGRPLRISFALDKVRGGPVVVPRLSHIDN

SwissProt top hitse value%identityAlignment
P98179 RNA-binding protein 32.1e-1648.28Show/hide
Query:  SPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGRPLRISFALDKVRG
        S    KLFV GL+++ DE++L+D FSSFG ++EV +V D+++ RSRGFGF+ FTN + A  A  AM+G++L GR +R+  A    RG
Subjt:  SPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGRPLRISFALDKVRG

Q9FNR1 Glycine-rich RNA-binding protein 3, mitochondrial3.4e-1946.51Show/hide
Query:  TNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGRPLRISFALDKVRGG
        +++KLF+ G+++SMDE SL++AF+ +GEV + R++ D+++GRSRGFGFV FT+ + A  A  A+DG+ L GR +++++A D+  GG
Subjt:  TNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGRPLRISFALDKVRGG

Q9LIS2 Glycine-rich RNA-binding protein 4, mitochondrial1.3e-1853.09Show/hide
Query:  NNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGRPLRISFALDK
        ++KLFV GLSW  D+ SLK AF+SFGEV E  ++ D+++GRSRGFGFV+F+ +D A  A   MDGK L GR +R++ A ++
Subjt:  NNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGRPLRISFALDK

Q9SVM8 Glycine-rich RNA-binding protein 2, mitochondrial8.5e-1849.38Show/hide
Query:  NNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGRPLRISFALDK
        + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF ++  A  A   MDGK L GR +R++ A D+
Subjt:  NNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGRPLRISFALDK

W8E7I1 RNA-binding protein 31.2e-1649.43Show/hide
Query:  SPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGRPLRISFALDKVRG
        S    KLFV GL+++ DER+L+D FSSFG ++EV +V D+++ RSRGFGF+ FTN + A  A  AM+G++L GR +R+  A    RG
Subjt:  SPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGRPLRISFALDKVRG

Arabidopsis top hitse value%identityAlignment
AT3G08000.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.6e-3872.48Show/hide
Query:  FCSESSSSAPLPSPSPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGRPLRISFALDKVR
        FC+ SS+S         ++KLF+ GLSWS+DE+SLKDAFSSFGEVAEVRI YDK SGRSRGFGFV+F  + DA  AKDAMDGK LLGRPLRISFAL++VR
Subjt:  FCSESSSSAPLPSPSPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGRPLRISFALDKVR

Query:  GGPVVVPRL
        GGPVVVPRL
Subjt:  GGPVVVPRL

AT3G23830.1 glycine-rich RNA-binding protein 49.3e-2053.09Show/hide
Query:  NNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGRPLRISFALDK
        ++KLFV GLSW  D+ SLK AF+SFGEV E  ++ D+++GRSRGFGFV+F+ +D A  A   MDGK L GR +R++ A ++
Subjt:  NNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGRPLRISFALDK

AT3G23830.2 glycine-rich RNA-binding protein 49.3e-2053.09Show/hide
Query:  NNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGRPLRISFALDK
        ++KLFV GLSW  D+ SLK AF+SFGEV E  ++ D+++GRSRGFGFV+F+ +D A  A   MDGK L GR +R++ A ++
Subjt:  NNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGRPLRISFALDK

AT4G13850.4 glycine-rich RNA-binding protein 25.4e-2049.41Show/hide
Query:  NNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGRPLRISFALDKVRGG
        + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF ++  A  A   MDGK L GR +R++ A D+  GG
Subjt:  NNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGRPLRISFALDKVRGG

AT5G61030.1 glycine-rich RNA-binding protein 32.4e-2046.51Show/hide
Query:  TNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGRPLRISFALDKVRGG
        +++KLF+ G+++SMDE SL++AF+ +GEV + R++ D+++GRSRGFGFV FT+ + A  A  A+DG+ L GR +++++A D+  GG
Subjt:  TNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMDGKALLGRPLRISFALDKVRGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCGCACGAACACCTTGATGATGCTGATTGCTAGAAGAGCAGTAGTAACCAATTTCCAAAACCCAACTCCGAGCTTTCGGTGCTTCTGTTCTGAATCCTCCTCCTC
GGCTCCTTTACCTTCTCCTTCTCCGACAAACAATAAGCTCTTTGTCGCAGGGTTGTCGTGGTCCATGGACGAGAGATCCTTGAAAGATGCGTTTTCTTCCTTTGGAGAGG
TTGCTGAAGTCAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGATTTGTAAACTTCACAAACGACGATGATGCGCAATGTGCCAAAGATGCAATGGAT
GGAAAGGCATTATTAGGGCGTCCGTTGAGGATAAGCTTTGCCCTTGACAAGGTTCGTGGTGGTCCTGTTGTCGTTCCTCGACTTTCACACATAGACAACAATGTGAATAC
TGGACAAGTAGGGAACCAACATTATGAAGAACCTCAATTTAGGATTGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATCGCACGAACACCTTGATGATGCTGATTGCTAGAAGAGCAGTAGTAACCAATTTCCAAAACCCAACTCCGAGCTTTCGGTGCTTCTGTTCTGAATCCTCCTCCTC
GGCTCCTTTACCTTCTCCTTCTCCGACAAACAATAAGCTCTTTGTCGCAGGGTTGTCGTGGTCCATGGACGAGAGATCCTTGAAAGATGCGTTTTCTTCCTTTGGAGAGG
TTGCTGAAGTCAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGATTTGTAAACTTCACAAACGACGATGATGCGCAATGTGCCAAAGATGCAATGGAT
GGAAAGGCATTATTAGGGCGTCCGTTGAGGATAAGCTTTGCCCTTGACAAGGTTCGTGGTGGTCCTGTTGTCGTTCCTCGACTTTCACACATAGACAACAATGTGAATAC
TGGACAAGTAGGGAACCAACATTATGAAGAACCTCAATTTAGGATTGTTTAA
Protein sequenceShow/hide protein sequence
MNRTNTLMMLIARRAVVTNFQNPTPSFRCFCSESSSSAPLPSPSPTNNKLFVAGLSWSMDERSLKDAFSSFGEVAEVRIVYDKDSGRSRGFGFVNFTNDDDAQCAKDAMD
GKALLGRPLRISFALDKVRGGPVVVPRLSHIDNNVNTGQVGNQHYEEPQFRIV