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Sed0009630 (gene) of Chayote v1 genome

Gene IDSed0009630
OrganismSechium edule (Chayote v1)
Description40S ribosomal protein S26
Genome locationLG04:41014138..41018037
RNA-Seq ExpressionSed0009630
SyntenySed0009630
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsIPR000892 - Ribosomal protein S26e
IPR038551 - Ribosomal protein S26e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599946.1 40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia]3.5e-2257.6Show/hide
Query:  IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CFLCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ------
        +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      + Y ++C   SHVVRVRSRTDRRNRQPPQRF+R+      
Subjt:  IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CFLCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ------

Query:  ----------SQAPRPVGAGNPARV
                   QAPRPVGAGNPARV
Subjt:  ----------SQAPRPVGAGNPARV

XP_004146441.1 40S ribosomal protein S26-1 [Cucumis sativus]4.2e-2361.34Show/hide
Query:  IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CFLCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ------
        +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      + Y ++C   SHVVRVRSRTDRRNRQPPQRFIR+      
Subjt:  IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CFLCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ------

Query:  ----SQAPRPVGAGNPARV
             QAPRPVGAGNPARV
Subjt:  ----SQAPRPVGAGNPARV

XP_022941874.1 40S ribosomal protein S26-3-like [Cucurbita moschata]1.6e-2259.02Show/hide
Query:  IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CFLCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ------
        +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      + Y ++C   SHVVRVRSRTDRRNRQPPQRF+R+      
Subjt:  IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CFLCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ------

Query:  -------SQAPRPVGAGNPARV
                QAPRPVGAGNPARV
Subjt:  -------SQAPRPVGAGNPARV

XP_022943123.1 40S ribosomal protein S26-1-like [Cucurbita moschata]1.3e-2159.66Show/hide
Query:  IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CFLCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ------
        +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      + Y ++C   SHVVRVRSRTDRRNRQPPQRFIR+      
Subjt:  IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CFLCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ------

Query:  ----SQAPRPVGAGNPARV
             QAPRP GAG PARV
Subjt:  ----SQAPRPVGAGNPARV

XP_022996709.1 40S ribosomal protein S26-3-like [Cucurbita maxima]1.6e-2259.02Show/hide
Query:  IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CFLCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ------
        +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      + Y ++C   SHVVRVRSRTDRRNRQPPQRF+R+      
Subjt:  IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CFLCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ------

Query:  -------SQAPRPVGAGNPARV
                QAPRPVGAGNPARV
Subjt:  -------SQAPRPVGAGNPARV

TrEMBL top hitse value%identityAlignment
A0A0A0KM45 40S ribosomal protein S262.0e-2361.34Show/hide
Query:  IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CFLCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ------
        +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      + Y ++C   SHVVRVRSRTDRRNRQPPQRFIR+      
Subjt:  IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CFLCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ------

Query:  ----SQAPRPVGAGNPARV
             QAPRPVGAGNPARV
Subjt:  ----SQAPRPVGAGNPARV

A0A1S3C5M1 40S ribosomal protein S262.0e-2361.34Show/hide
Query:  IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CFLCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ------
        +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      + Y ++C   SHVVRVRSRTDRRNRQPPQRFIR+      
Subjt:  IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CFLCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ------

Query:  ----SQAPRPVGAGNPARV
             QAPRPVGAGNPARV
Subjt:  ----SQAPRPVGAGNPARV

A0A5A7VIJ0 40S ribosomal protein S262.0e-2361.34Show/hide
Query:  IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CFLCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ------
        +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      + Y ++C   SHVVRVRSRTDRRNRQPPQRFIR+      
Subjt:  IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CFLCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ------

Query:  ----SQAPRPVGAGNPARV
             QAPRPVGAGNPARV
Subjt:  ----SQAPRPVGAGNPARV

A0A6J1FPQ0 40S ribosomal protein S267.7e-2359.02Show/hide
Query:  IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CFLCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ------
        +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      + Y ++C   SHVVRVRSRTDRRNRQPPQRF+R+      
Subjt:  IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CFLCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ------

Query:  -------SQAPRPVGAGNPARV
                QAPRPVGAGNPARV
Subjt:  -------SQAPRPVGAGNPARV

A0A6J1K9H1 40S ribosomal protein S267.7e-2359.02Show/hide
Query:  IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CFLCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ------
        +KF   S+C K        CP D+AIKRFLVRN+VEQAAVRDVQEACVYD   L      + Y ++C   SHVVRVRSRTDRRNRQPPQRF+R+      
Subjt:  IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CFLCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ------

Query:  -------SQAPRPVGAGNPARV
                QAPRPVGAGNPARV
Subjt:  -------SQAPRPVGAGNPARV

SwissProt top hitse value%identityAlignment
P49206 40S ribosomal protein S26-12.0e-1555.1Show/hide
Query:  CP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFLC----YSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ----------SQAPRPVGAGNPA
        CP D+AIKRF+VRN+VEQAA+RDVQEA VY+   L  L     Y ++C   SHVVRVRSRT+RR R PP RF R+           QAPRP G G  A
Subjt:  CP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFLC----YSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ----------SQAPRPVGAGNPA

P49216 40S ribosomal protein S265.2e-1651.82Show/hide
Query:  IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFL------CYSLTC-SHVVRVRSRTDRRNRQPPQRFIRQS---QA
        +K+   S+C K        CP D+AIKRF VRN+VEQAA+RDVQEACV+D  VL  L      C S    +H+VRVRSR +RR+R+PP+RF R+    Q 
Subjt:  IKFFSESSCPKSLLFYSHFCP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFL------CYSLTC-SHVVRVRSRTDRRNRQPPQRFIRQS---QA

Query:  PRPVGAGNPA
        PRP G G PA
Subjt:  PRPVGAGNPA

Q56JV1 40S ribosomal protein S265.5e-1051.28Show/hide
Query:  DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CFLCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQSQAPRP
        D+AIK+F++RN+VE AAVRD+ EA V+D  VL      L Y ++C   S VVR RSR  R++R PP RF     APRP
Subjt:  DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVL----CFLCYSLTC---SHVVRVRSRTDRRNRQPPQRFIRQSQAPRP

Q8LPJ7 40S ribosomal protein S26-22.0e-1555.1Show/hide
Query:  CP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFLC----YSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ----------SQAPRPVGAGNPA
        CP D+AIKRF+VRN+VEQAA+RDVQEA VY+   L  L     Y ++C   SHVVRVRSRT+RR R PP RF R+           QAPRP G G  A
Subjt:  CP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFLC----YSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ----------SQAPRPVGAGNPA

Q9LYK9 40S ribosomal protein S26-34.4e-1556.12Show/hide
Query:  CP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFLC----YSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ----------SQAPRPVGAGNPA
        CP D+AIKRF+VRN+VEQAA+RDVQEA VY+   L  L     Y ++C   SHVVRVRSRT+RR R PP RF R+           QAPRP G G PA
Subjt:  CP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFLC----YSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ----------SQAPRPVGAGNPA

Arabidopsis top hitse value%identityAlignment
AT2G40510.1 Ribosomal protein S26e family protein1.4e-1655.1Show/hide
Query:  CP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFLC----YSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ----------SQAPRPVGAGNPA
        CP D+AIKRF+VRN+VEQAA+RDVQEA VY+   L  L     Y ++C   SHVVRVRSRT+RR R PP RF R+           QAPRP G G  A
Subjt:  CP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFLC----YSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ----------SQAPRPVGAGNPA

AT2G40590.1 Ribosomal protein S26e family protein1.4e-1655.1Show/hide
Query:  CP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFLC----YSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ----------SQAPRPVGAGNPA
        CP D+AIKRF+VRN+VEQAA+RDVQEA VY+   L  L     Y ++C   SHVVRVRSRT+RR R PP RF R+           QAPRP G G  A
Subjt:  CP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFLC----YSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ----------SQAPRPVGAGNPA

AT3G56340.1 Ribosomal protein S26e family protein3.1e-1656.12Show/hide
Query:  CP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFLC----YSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ----------SQAPRPVGAGNPA
        CP D+AIKRF+VRN+VEQAA+RDVQEA VY+   L  L     Y ++C   SHVVRVRSRT+RR R PP RF R+           QAPRP G G PA
Subjt:  CP-DEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFLC----YSLTC---SHVVRVRSRTDRRNRQPPQRFIRQ----------SQAPRPVGAGNPA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCATCCATCCATTAAATTTTTCTCTGAATCTTCTTGCCCTAAATCGTTATTGTTTTACTCGCATTTCTGCCCTGACGAGGCTATTAAGAGATTTCTTGTGAGGAA
TGTTGTGGAGCAGGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTTTATGACCATGCAGTACTGTGTTTCTTGTGCTATTCACTCACATGCTCACATGTTGTGAGAGTTC
GATCTCGTACTGATAGAAGAAATCGGCAACCACCACAGCGCTTCATCAGACAGAGCCAAGCTCCTCGTCCCGTTGGAGCTGGAAATCCTGCTCGTGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATCATCCATCCATTAAATTTTTCTCTGAATCTTCTTGCCCTAAATCGTTATTGTTTTACTCGCATTTCTGCCCTGACGAGGCTATTAAGAGATTTCTTGTGAGGAA
TGTTGTGGAGCAGGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTTTATGACCATGCAGTACTGTGTTTCTTGTGCTATTCACTCACATGCTCACATGTTGTGAGAGTTC
GATCTCGTACTGATAGAAGAAATCGGCAACCACCACAGCGCTTCATCAGACAGAGCCAAGCTCCTCGTCCCGTTGGAGCTGGAAATCCTGCTCGTGTGTAAAGAAACCTT
TTTAGTTTTTATGGCTTCTATGAGCAATTCGTAGAGATCTTTTATCCCATAAGTTTTTTTTGTCTTGTGGATGATAGTGAATTTTTTAATCAATTCGTAAACAAACACGA
CAATTTTGCAACTTTGAGGGGGTGATTGGATGAGGTTTTGATGGGGAGATAGTATGAGAAGTTATTTTGAGTAGTTAACAAGTGAGAGTTGTAGTCTAAAATTGTTTGGA
TGTAGTTCTTTTGTAGAGGAGTTAAAGTAAGAAACTTGTTTGGATGTAGATTTTTAATTAGTAGTTATTTTGAGTAGTTAAAAAAATAATGATAAGAAACGAGTGGTTAA
AAATGAGTTATTTTGAATAATTAAAAATGAATGATTAGAAATGAGTAGTTAAAAATGATTGAGTAGTTATAAATGAATGAATAGAAATAAATGGTTAAAAATGAAGAGTT
GTTTTTAATAGTAAAAATGAGGACTTATATTGAGGAGTTACAAAAATTTGTTTGGTTGTAAATTTTCGAGGAGTTGGTAAATCCTCCATAAATATGGCAAACAAACACCC
CCTAAGGAGCTAAGGACCAGGTTTATTGAGTTATATAATGTTTTTTTTTCAGTTTCTTGTTGAATTTGGTTGTTCACCCTTTTTTTTTTTTGATTTTTTTTTCTTTCTCT
TAATTCATCATTTCTAATCATCTTGAAATCTTTGACATGTTTCCCTCCCCTCGTTCTTGTTGGCAGCAGGGAATGTAGGGATGCAGCCAAAAT
Protein sequenceShow/hide protein sequence
MDHPSIKFFSESSCPKSLLFYSHFCPDEAIKRFLVRNVVEQAAVRDVQEACVYDHAVLCFLCYSLTCSHVVRVRSRTDRRNRQPPQRFIRQSQAPRPVGAGNPARV