CuGenDBv2

Gene ID	Sed0009640
Organism	Sechium edule (Chayote v1)
Description	Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial
Genome location	LG05:28828703..28833921
RNA-Seq Expression	Sed0009640
Synteny	Sed0009640
Gene Ontology terms	GO:0006450 - regulation of translational fidelity (biological process) GO:0032543 - mitochondrial translation (biological process) GO:0070681 - glutaminyl-tRNAGln biosynthesis via transamidation (biological process) GO:0005739 - mitochondrion (cellular component) GO:0009507 - chloroplast (cellular component) GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016740 - transferase activity (molecular function) GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008466091.1 PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucumis melo]

8.9e-53

78.77

Show/hide

Query:  MGSTRAVPVLKGALSLPSLNPRTFIASSFNTFPVS---IRKWSTATPIRASLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEP
        MGS +A+P+LKGA S PSL  + FI+++F++ PVS   IRK STA+ + ASLQPPDVPRLAQTARISLTP QV EFAPKI QVV WFGQLQTVDLQSIEP
Subjt:  MGSTRAVPVLKGALSLPSLNPRTFIASSFNTFPVS---IRKWSTATPIRASLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEP

Query:  SIRADTEGGNQRSDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
        SIRADTEGGNQR+DV ETFENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  SIRADTEGGNQRSDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

XP_022143239.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Momordica charantia]

1.8e-53

79.73

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Query:  MGSTRAVPVLKGALSLPSLNPRTFIAS--SFNTFPVS---IRKWSTATPIRASLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSI
        MGS +A+P+LKGALSLPSL  + FI +   F+T P+S   IRK ST   IRASLQPPDVPRLA+TARISLTP +V EFAPKIRQVV WFGQLQTVDLQSI
Subjt:  MGSTRAVPVLKGALSLPSLNPRTFIAS--SFNTFPVS---IRKWSTATPIRASLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSI

Query:  EPSIRADTEGGNQRSDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
        EPSIRADTEGGNQR+D+SETFENREAMIGAVPVFDEPYIRVPKVLNKE
Subjt:  EPSIRADTEGGNQRSDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

XP_022941306.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita moschata]

6.2e-54

81.51

Show/hide

Query:  MGSTRAVPVLKGALSLPSLNPRTFIASSFNTFPVS---IRKWSTATPIRASLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEP
        MGS  A+ +LKGA SLPSLNP+ FI++S N+ PVS   IRK STA  IRASLQPPDVPRLA+TARISL P +V EFAPKIRQVV WFGQLQ VDLQSIEP
Subjt:  MGSTRAVPVLKGALSLPSLNPRTFIASSFNTFPVS---IRKWSTATPIRASLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEP

Query:  SIRADTEGGNQRSDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
        SIRADTEGGNQR DVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
Subjt:  SIRADTEGGNQRSDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

XP_022981070.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like [Cucurbita maxima]

6.9e-53

79.45

Show/hide

Query:  MGSTRAVPVLKGALSLPSLNPRTFIASSFNTFPVS---IRKWSTATPIRASLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEP
        MGS  A+ +LKGA SLP LNP+ FI++S NT PVS   I+K STA  IRASLQPPDVPRLA+TARISL P++V EFAPKIRQVV WFGQL+ VDLQSIEP
Subjt:  MGSTRAVPVLKGALSLPSLNPRTFIASSFNTFPVS---IRKWSTATPIRASLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEP

Query:  SIRADTEGGNQRSDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
        SIRADTEGGNQR DVSETFENREA+IGAVPVFDEPYIRVPKVLNKE
Subjt:  SIRADTEGGNQRSDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

XP_023521629.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]

3.6e-54

82.27

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Query:  AVPVLKGALSLPSLNPRTFIASSFNTFPVS---IRKWSTATPIRASLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEPSIRAD
        A+ +LKGA SLPSLNP+ FI++S N+ PVS   IRK STA  IRASLQPPDVPRLA+TARISL P++V EFAPKIRQVV WFGQLQ VDLQSIEPSIRAD
Subjt:  AVPVLKGALSLPSLNPRTFIASSFNTFPVS---IRKWSTATPIRASLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEPSIRAD

Query:  TEGGNQRSDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
        TEGGNQR DVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
Subjt:  TEGGNQRSDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CQE8 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

4.3e-53

78.77

Show/hide

Query:  MGSTRAVPVLKGALSLPSLNPRTFIASSFNTFPVS---IRKWSTATPIRASLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEP
        MGS +A+P+LKGA S PSL  + FI+++F++ PVS   IRK STA+ + ASLQPPDVPRLAQTARISLTP QV EFAPKI QVV WFGQLQTVDLQSIEP
Subjt:  MGSTRAVPVLKGALSLPSLNPRTFIASSFNTFPVS---IRKWSTATPIRASLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEP

Query:  SIRADTEGGNQRSDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
        SIRADTEGGNQR+DV ETFENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  SIRADTEGGNQRSDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

A0A5A7T6R5 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

4.3e-53

78.77

Show/hide

Query:  MGSTRAVPVLKGALSLPSLNPRTFIASSFNTFPVS---IRKWSTATPIRASLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEP
        MGS +A+P+LKGA S PSL  + FI+++F++ PVS   IRK STA+ + ASLQPPDVPRLAQTARISLTP QV EFAPKI QVV WFGQLQTVDLQSIEP
Subjt:  MGSTRAVPVLKGALSLPSLNPRTFIASSFNTFPVS---IRKWSTATPIRASLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEP

Query:  SIRADTEGGNQRSDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
        SIRADTEGGNQR+DV ETFENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  SIRADTEGGNQRSDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

A0A6J1CQ90 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

8.7e-54

79.73

Show/hide

Query:  MGSTRAVPVLKGALSLPSLNPRTFIAS--SFNTFPVS---IRKWSTATPIRASLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSI
        MGS +A+P+LKGALSLPSL  + FI +   F+T P+S   IRK ST   IRASLQPPDVPRLA+TARISLTP +V EFAPKIRQVV WFGQLQTVDLQSI
Subjt:  MGSTRAVPVLKGALSLPSLNPRTFIAS--SFNTFPVS---IRKWSTATPIRASLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSI

Query:  EPSIRADTEGGNQRSDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
        EPSIRADTEGGNQR+D+SETFENREAMIGAVPVFDEPYIRVPKVLNKE
Subjt:  EPSIRADTEGGNQRSDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

A0A6J1FM33 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

3.0e-54

81.51

Show/hide

Query:  MGSTRAVPVLKGALSLPSLNPRTFIASSFNTFPVS---IRKWSTATPIRASLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEP
        MGS  A+ +LKGA SLPSLNP+ FI++S N+ PVS   IRK STA  IRASLQPPDVPRLA+TARISL P +V EFAPKIRQVV WFGQLQ VDLQSIEP
Subjt:  MGSTRAVPVLKGALSLPSLNPRTFIASSFNTFPVS---IRKWSTATPIRASLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEP

Query:  SIRADTEGGNQRSDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
        SIRADTEGGNQR DVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
Subjt:  SIRADTEGGNQRSDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

A0A6J1IVG1 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

3.3e-53

79.45

Show/hide

Query:  MGSTRAVPVLKGALSLPSLNPRTFIASSFNTFPVS---IRKWSTATPIRASLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEP
        MGS  A+ +LKGA SLP LNP+ FI++S NT PVS   I+K STA  IRASLQPPDVPRLA+TARISL P++V EFAPKIRQVV WFGQL+ VDLQSIEP
Subjt:  MGSTRAVPVLKGALSLPSLNPRTFIASSFNTFPVS---IRKWSTATPIRASLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEP

Query:  SIRADTEGGNQRSDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
        SIRADTEGGNQR DVSETFENREA+IGAVPVFDEPYIRVPKVLNKE
Subjt:  SIRADTEGGNQRSDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

SwissProt top hits

e value

%identity

Alignment

A2XK57 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.7e-30

65.98

Show/hide

Query:  SLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEPSIRADTEGGNQ-RSDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
        +L+PPD+PRLA  ARISL+P +  EFAPKIRQVV WFGQLQ VDL+S+EPS+RA T  GN  R D  ETF NR+A+I +VP +D+PYI+VP+VLNKE
Subjt:  SLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEPSIRADTEGGNQ-RSDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

B9INH0 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.3e-33

59.31

Show/hide

Query:  MGSTRAVPVLKGALSLPSLNPRTFIASSFNTFPV-SIRKWST-ATPIRASLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEPS
        MGS RAV +LKG    P  +   F+ +     P  SIR+++T AT   +SL+PPDV RLA+TARISLTP QV EF PKIRQV+ W   L +VDL S+EPS
Subjt:  MGSTRAVPVLKGALSLPSLNPRTFIASSFNTFPV-SIRKWST-ATPIRASLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEPS

Query:  IRADTEGGNQRSDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
        IRADTEG N R D  ETFENREA+I AVP +++PY++VPKVLNKE
Subjt:  IRADTEGGNQRSDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

B9RRX2 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.6e-33

65.42

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Query:  RKWSTATPIRASLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEPSIRADTEGGNQRSDVSETFENREAMIGAVPVFDEPYIRV
        R++S      +SLQPPDV RLA+TARISL   +V EFAPKIRQV+ WFGQLQ VDL S+EP+IRAD+EG N R DV ETF  REA+I AVP +++PY++V
Subjt:  RKWSTATPIRASLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEPSIRADTEGGNQRSDVSETFENREAMIGAVPVFDEPYIRV

Query:  PKVLNKE
        PKVLNKE
Subjt:  PKVLNKE

D7STK2 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

5.0e-38

60.45

Show/hide

Query:  KGALSLPSLNPRTFIASSFNTFPVSIRKWSTAT-PIRASLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEPSIRADTEGGNQR
        +  L L +    T + +S +TF  ++ + ST +   R++L PPD+PRLA+TARISLTP +V EFAPKIRQV+ WFGQLQ VDLQSIEPSIRADTEG N R
Subjt:  KGALSLPSLNPRTFIASSFNTFPVSIRKWSTAT-PIRASLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEPSIRADTEGGNQR

Query:  SDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
         D  ETFENREA+I A+P ++EPY++VPKVLNK+
Subjt:  SDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

Q7XZZ1 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.7e-30

65.98

Show/hide

Query:  SLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEPSIRADTEGGNQ-RSDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
        +L+PPD+PRLA  ARISL+P +  EFAPKIRQVV WFGQLQ VDL+S+EPS+RA T  GN  R D  ETF NR+A+I +VP +D+PYI+VP+VLNKE
Subjt:  SLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEPSIRADTEGGNQ-RSDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

Arabidopsis top hits

e value

%identity

Alignment

AT4G32915.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translational fidelity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glu-tRNAGln amidotransferase, C subunit (InterPro:IPR003837); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

1.3e-30

61.05

Show/hide

Query:  LQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEPSIRADTEGGNQRSDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
        LQPPDV RLAQTARISLTPA++ E   KIR+V+ WFGQLQ VD+ S+EP+IRA+ +GGN R D  ETF+NR+++  ++P F++ Y++VPK+LNKE
Subjt:  LQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEPSIRADTEGGNQRSDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

Sequences

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CDS sequence

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ATGGGAAGTACGAGAGCTGTTCCTGTGCTGAAGGGAGCTTTATCACTTCCATCGCTAAATCCCCGAACCTTCATCGCTAGCAGCTTCAACACATTTCCTGTTTCCATTCG
GAAATGGTCCACTGCGACACCCATTAGGGCTTCTCTTCAACCTCCCGATGTGCCCCGTTTAGCCCAAACCGCTCGAATTTCCCTCACTCCGGCTCAGGTTCATGAATTTG
CTCCTAAAATCCGACAAGTTGTTCATTGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATTGAGCCTTCCATCAGAGCAGATACTGAAGGTGGCAATCAGCGAAGT
GATGTTTCTGAAACATTTGAAAATAGAGAGGCCATGATTGGCGCAGTTCCAGTCTTTGATGAGCCGTATATCAGAGTTCCTAAAGTTCTGAATAAGGAGTAG

mRNA sequence

Show/hide mRNA sequence

GTGACATTGCTTTTAAAAATCCGAAAAAAGATAGAGAAAGATAGAGAGGGCGCATTAGAAAATTTGGCGACCCTTTTTGACAGTTGGGGTGCGATGGGAAGTACGAGAGC
TGTTCCTGTGCTGAAGGGAGCTTTATCACTTCCATCGCTAAATCCCCGAACCTTCATCGCTAGCAGCTTCAACACATTTCCTGTTTCCATTCGGAAATGGTCCACTGCGA
CACCCATTAGGGCTTCTCTTCAACCTCCCGATGTGCCCCGTTTAGCCCAAACCGCTCGAATTTCCCTCACTCCGGCTCAGGTTCATGAATTTGCTCCTAAAATCCGACAA
GTTGTTCATTGGTTTGGGCAGCTCCAGACAGTTGATCTTCAAAGTATTGAGCCTTCCATCAGAGCAGATACTGAAGGTGGCAATCAGCGAAGTGATGTTTCTGAAACATT
TGAAAATAGAGAGGCCATGATTGGCGCAGTTCCAGTCTTTGATGAGCCGTATATCAGAGTTCCTAAAGTTCTGAATAAGGAGTAGTTGCCAAGTTAAGAGGCTGATTAGT
GCACATTCTGTTTGTCACATTAGATGTTTATCCAAAACTCAAAGCTCTATGTGTCCTTCATTTGGCTATGGTGGGCCATCCATTTAAAGGAATAAATAAGTTTATGTGGA
TAACCTTTACTATCAATTTTTTTTTTGAGGATTCCATGGAGTGAAAGGAATAATTACATTTTCAGAGGTCCCCTACCTTTATGATTGGTTTTGGACTTGATTTTCTGTTA
TTTAGAATTTTACTTGCTATATCTTATCTTCTTTTTTTTTT

Protein sequence

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MGSTRAVPVLKGALSLPSLNPRTFIASSFNTFPVSIRKWSTATPIRASLQPPDVPRLAQTARISLTPAQVHEFAPKIRQVVHWFGQLQTVDLQSIEPSIRADTEGGNQRS
DVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

Sed0009640 (gene) of Chayote v1 genome