; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0009754 (gene) of Chayote v1 genome

Gene IDSed0009754
OrganismSechium edule (Chayote v1)
DescriptionEncodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: (RGF1), (RGF2), (RGF3), (RGF4), (RGF5), (RGF6), (RGF7), (RGF8) and (RGF9).
Genome locationLG04:31852035..31853210
RNA-Seq ExpressionSed0009754
SyntenySed0009754
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7028383.1 Root meristem growth factor 6 [Cucurbita argyrosperma subsp. argyrosperma]1.1e-3066.41Show/hide
Query:  MAMP-SLFLILLFLSTLLHACDARLLLLFESSKLQPSPISRGLRIDQPHRSMDSNNDDKVSSMEIVGIEILEQGMKKHKRMAMELPM----KDKDKDTMV
        M MP SLFL LLFLST LHACDARLL L  SS+L+P  IS G R +Q  +S+D +  + VSSME VGIEIL +GMKK +R+AMELP+    +DKD D +V
Subjt:  MAMP-SLFLILLFLSTLLHACDARLLLLFESSKLQPSPISRGLRIDQPHRSMDSNNDDKVSSMEIVGIEILEQGMKKHKRMAMELPM----KDKDKDTMV

Query:  NSDDENEVGEDMVVMDYAQPHRKPPIHNENP
        NS +ENEVGEDMVVMDYAQPHRKPPIHN+ P
Subjt:  NSDDENEVGEDMVVMDYAQPHRKPPIHNENP

XP_023005579.1 uncharacterized protein LOC111498521 [Cucurbita maxima]1.4e-3066.17Show/hide
Query:  MAMP-SLFLILLFLSTLLHACDARLLLLFESSKLQPSPISRGLRIDQPHRSMDSNNDDKVSSMEIVGIEILEQGMKKHKRMAMELPM------KDKDKDT
        M MP SLFL LLFLST LHACDARLL L  SS+L+   IS G R+DQ  RS+D +  ++VSS+E VGIEIL +GMKK +R+AMELP+      KDKD D 
Subjt:  MAMP-SLFLILLFLSTLLHACDARLLLLFESSKLQPSPISRGLRIDQPHRSMDSNNDDKVSSMEIVGIEILEQGMKKHKRMAMELPM------KDKDKDT

Query:  MVNSDDENEVGEDMVVMDYAQPHRKPPIHNENP
        +VNS +ENEVGEDMVVMDYAQPHRKPPIHN  P
Subjt:  MVNSDDENEVGEDMVVMDYAQPHRKPPIHNENP

XP_023540680.1 uncharacterized protein LOC111800973 [Cucurbita pepo subsp. pepo]9.4e-3063.08Show/hide
Query:  MAMP-SLFLILLFLSTLLHACDARLLLLFESSKLQPSPISRGLRIDQPHRSMDSNNDDKVSSMEIVGIEILEQGMKKHKRMAMELPMKDKDKDTMVN---
        M MP S FL LLFLST LHACDARLL L  SS+L+   IS G R +Q  RS+D +  + VSSME VGIEIL +GMKK +R+AMELP++D+D+D  ++   
Subjt:  MAMP-SLFLILLFLSTLLHACDARLLLLFESSKLQPSPISRGLRIDQPHRSMDSNNDDKVSSMEIVGIEILEQGMKKHKRMAMELPMKDKDKDTMVN---

Query:  SDDENEVGEDMVVMDYAQPHRKPPIHNENP
        + +ENEVGEDMVVMDYAQPHRKPPIHN+ P
Subjt:  SDDENEVGEDMVVMDYAQPHRKPPIHNENP

XP_038905996.1 uncharacterized protein LOC120091906 isoform X1 [Benincasa hispida]2.3e-2861.54Show/hide
Query:  MPSLFLILLFLSTLLHACDARLLLLFES----SKLQPSPISRGLRIDQPHRSMDSNNDDKVSSME-IVGIEILEQGMKKH-KRMAMELPMKDKDKDTMVN
        MP LFLILL  S+ LHAC+AR L  FES    S+++P  IS+G+  DQP RS + +N DK+S  E IVGIE+L+QGMKKH  R+ ME PMK+K     V 
Subjt:  MPSLFLILLFLSTLLHACDARLLLLFES----SKLQPSPISRGLRIDQPHRSMDSNNDDKVSSME-IVGIEILEQGMKKH-KRMAMELPMKDKDKDTMVN

Query:  SDDENEVGEDMVVMDYAQPHRKPPIHNENP
        +  ENEVGEDMVVMDYAQPHRKPPIHNE P
Subjt:  SDDENEVGEDMVVMDYAQPHRKPPIHNENP

XP_038905997.1 uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida]1.7e-2660.77Show/hide
Query:  MPSLFLILLFLSTLLHACDARLLLLFES----SKLQPSPISRGLRIDQPHRSMDSNNDDKVSSME-IVGIEILEQGMKKH-KRMAMELPMKDKDKDTMVN
        MP LFLILL  S+ LHAC+AR L  FES    S+++P  IS+G+  DQP RS + +N DK+S  E IVGIE+L +GMKKH  R+ ME PMK+K     V 
Subjt:  MPSLFLILLFLSTLLHACDARLLLLFES----SKLQPSPISRGLRIDQPHRSMDSNNDDKVSSME-IVGIEILEQGMKKH-KRMAMELPMKDKDKDTMVN

Query:  SDDENEVGEDMVVMDYAQPHRKPPIHNENP
        +  ENEVGEDMVVMDYAQPHRKPPIHNE P
Subjt:  SDDENEVGEDMVVMDYAQPHRKPPIHNENP

TrEMBL top hitse value%identityAlignment
A0A0A0L298 Uncharacterized protein3.6e-1950.74Show/hide
Query:  MAMPSLFLILLFLSTLLHACDARLLLLFESSKL-----QPSPISRG---LRIDQPHRSMDSNNDDKV--SSMEIVGIEILEQGMKKHKRMAMELPMKDKD
        MAMP  FLILLF S+ LHACDA  L  F+SS       +   +S+G   +  DQ   S D NN+D +  +   I+GIE+L+   +   R+ ME PMK+K 
Subjt:  MAMPSLFLILLFLSTLLHACDARLLLLFESSKL-----QPSPISRG---LRIDQPHRSMDSNNDDKV--SSMEIVGIEILEQGMKKHKRMAMELPMKDKD

Query:  KDTMVNSDDENEVGEDMVVMDYAQPHRKPPIHNENP
            V +  ENEVGEDMVVMDYAQPHRKPPIHNE P
Subjt:  KDTMVNSDDENEVGEDMVVMDYAQPHRKPPIHNENP

A0A2J6MHI4 Uncharacterized protein1.7e-0535.61Show/hide
Query:  LHACDARLLLLF--ESSKLQPSPISRGLRI---DQPHRSMDSNNDDKVSSMEIVGIEI-----------------LEQGMKKHKRMAMELPMKDKDKDTM
        +HACD+R L +F  E  K      S+   I   ++     ++N +DK S  E    E+                   QG K H R+ ME   K KD    
Subjt:  LHACDARLLLLF--ESSKLQPSPISRGLRI---DQPHRSMDSNNDDKVSSMEIVGIEI-----------------LEQGMKKHKRMAMELPMKDKDKDTM

Query:  VNSDDENEVGEDMVVMDYAQPHRKPPIHNENP
        +N+  ++ V ED+ VMDYAQPHRKPPIHN  P
Subjt:  VNSDDENEVGEDMVVMDYAQPHRKPPIHNENP

A0A6J1DKL1 uncharacterized protein LOC1110213964.6e-2259.85Show/hide
Query:  MAMPSLFLILLFLSTLLHACDA-RLLLLFESSKLQP-----SPISRGLRIDQPHRSMDSNNDDKVSSMEIVGIEILEQGMKKHKRMAMELPMKDKDKDTM
        MA PSL  ILL LST LHACDA   L LFE S         +PI +  R DQP RS++ N   KVSS   +GI IL +GMKKHKR+AME  MK+K+K   
Subjt:  MAMPSLFLILLFLSTLLHACDA-RLLLLFESSKLQP-----SPISRGLRIDQPHRSMDSNNDDKVSSMEIVGIEILEQGMKKHKRMAMELPMKDKDKDTM

Query:  VNSDDENEVGEDMVVMDYAQPHRKPPIHNENP
        + S +ENEVGEDMVVMDYAQPHRKPPIHN+ P
Subjt:  VNSDDENEVGEDMVVMDYAQPHRKPPIHNENP

A0A6J1KZM9 uncharacterized protein LOC1114985217.0e-3166.17Show/hide
Query:  MAMP-SLFLILLFLSTLLHACDARLLLLFESSKLQPSPISRGLRIDQPHRSMDSNNDDKVSSMEIVGIEILEQGMKKHKRMAMELPM------KDKDKDT
        M MP SLFL LLFLST LHACDARLL L  SS+L+   IS G R+DQ  RS+D +  ++VSS+E VGIEIL +GMKK +R+AMELP+      KDKD D 
Subjt:  MAMP-SLFLILLFLSTLLHACDARLLLLFESSKLQPSPISRGLRIDQPHRSMDSNNDDKVSSMEIVGIEILEQGMKKHKRMAMELPM------KDKDKDT

Query:  MVNSDDENEVGEDMVVMDYAQPHRKPPIHNENP
        +VNS +ENEVGEDMVVMDYAQPHRKPPIHN  P
Subjt:  MVNSDDENEVGEDMVVMDYAQPHRKPPIHNENP

A0A6S7NRQ9 Uncharacterized protein2.3e-0534.27Show/hide
Query:  LFLILLFLSTLLHACDARLLLLF--ESSKLQPSPISRG--LRIDQPHRS-MDSNNDDKVSSMEIVGIEI-----------------LEQGMKKHKRMAME
        ++ +++ L   +HACD+R L +F  E  K      S+   +R+    R+  ++N +DK S +E    E+                   QG K   R+ ME
Subjt:  LFLILLFLSTLLHACDARLLLLF--ESSKLQPSPISRG--LRIDQPHRS-MDSNNDDKVSSMEIVGIEI-----------------LEQGMKKHKRMAME

Query:  LPMKDKDKDTMVNSDDENEVGEDMVVMDYAQPHRKPPIHNENP
           K KD    +N+  +N V ED+ VMDYAQPHRKPPIHN  P
Subjt:  LPMKDKDKDTMVNSDDENEVGEDMVVMDYAQPHRKPPIHNENP

SwissProt top hitse value%identityAlignment
Q93VK8 Protein GOLVEN 12.4e-0482.61Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNE
        E GE++VVMDY QPHRKPPIHNE
Subjt:  EVGEDMVVMDYAQPHRKPPIHNE

Arabidopsis top hitse value%identityAlignment
AT4G16515.1 Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).1.7e-0582.61Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNE
        E GE++VVMDY QPHRKPPIHNE
Subjt:  EVGEDMVVMDYAQPHRKPPIHNE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATGCCTTCTTTGTTTCTCATTCTCCTATTCTTGTCAACTCTTTTGCATGCATGTGATGCTCGTCTTCTTCTATTATTCGAGAGTTCGAAGCTTCAACCAAGTCC
GATCTCTCGAGGGCTTCGAATAGATCAGCCTCATAGAAGTATGGACAGCAACAATGATGACAAGGTTTCTTCTATGGAGATTGTTGGGATTGAAATACTCGAGCAGGGAA
TGAAGAAGCACAAAAGGATGGCAATGGAGCTTCCAATGAAAGACAAAGACAAAGACACAATGGTAAACTCTGATGATGAAAATGAGGTTGGAGAAGACATGGTAGTGATG
GATTATGCACAACCCCACAGAAAACCTCCTATTCACAATGAAAACCCCTAG
mRNA sequenceShow/hide mRNA sequence
AACAAATCCCTCCATTTCTCTTTCTTTCTTCATTCTCATGGCCATGCCTTCTTTGTTTCTCATTCTCCTATTCTTGTCAACTCTTTTGCATGCATGTGATGCTCGTCTTC
TTCTATTATTCGAGAGTTCGAAGCTTCAACCAAGTCCGATCTCTCGAGGGCTTCGAATAGATCAGCCTCATAGAAGTATGGACAGCAACAATGATGACAAGGTTTCTTCT
ATGGAGATTGTTGGGATTGAAATACTCGAGCAGGGAATGAAGAAGCACAAAAGGATGGCAATGGAGCTTCCAATGAAAGACAAAGACAAAGACACAATGGTAAACTCTGA
TGATGAAAATGAGGTTGGAGAAGACATGGTAGTGATGGATTATGCACAACCCCACAGAAAACCTCCTATTCACAATGAAAACCCCTAGACCAATTTAATATTCTCAAATC
TCTTATGGATATTCAAAACATGTTCTAAAAATCTATGTCTCTTTTCTTTTCTTTTTTTTTTTGAATAAAGAAAATTAGTATAAAACTATTATGTGAGGATTGTTCTTGGA
TGAATAGGGTTATGCAAAC
Protein sequenceShow/hide protein sequence
MAMPSLFLILLFLSTLLHACDARLLLLFESSKLQPSPISRGLRIDQPHRSMDSNNDDKVSSMEIVGIEILEQGMKKHKRMAMELPMKDKDKDTMVNSDDENEVGEDMVVM
DYAQPHRKPPIHNENP