; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0009764 (gene) of Chayote v1 genome

Gene IDSed0009764
OrganismSechium edule (Chayote v1)
DescriptionRibonuclease H
Genome locationLG09:29927904..29929658
RNA-Seq ExpressionSed0009764
SyntenySed0009764
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044913.1 uncharacterized protein E6C27_scaffold74G002080 [Cucumis melo var. makuwa]1.3e-2040.25Show/hide
Query:  KSQGDRTTNKP-QFDPIPMTYTELLPQLIQNHQLMPKPMPQIQQPYPWCY-----------NPL---SNYQVNAINCLSNDNKQNVRDVMTPMKKLFDIL
        + QG +T +   +FD IPMTYTELLPQLIQN QL P PM  IQ PYP C+           NPL    N +VNA++ L    K  V + + P K LF+ L
Subjt:  KSQGDRTTNKP-QFDPIPMTYTELLPQLIQNHQLMPKPMPQIQQPYPWCY-----------NPL---SNYQVNAINCLSNDNKQNVRDVMTPMKKLFDIL

Query:  LVNRYILAKPSHTEATCDKYNVNLSCPFHGGAKGHTLDQCSEFHEKIQELMNSRLLTIL
            Y+  +        + Y+ +  C FH G  GH + QC +F  K+Q+LM+S++LT++
Subjt:  LVNRYILAKPSHTEATCDKYNVNLSCPFHGGAKGHTLDQCSEFHEKIQELMNSRLLTIL

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]4.1e-2735.22Show/hide
Query:  NVPMVNNASMQYTPYVNQGPRPQMNQGCQAQKQQHTIVPKSQGDRT------------TNKPQFDPIPMTYTELLPQLIQNHQLMPKPMPQIQQPYPWCY
        N P VNNA+  Y PY +Q  RP  +Q  Q         P+ Q   T              + QFDPIPMTYTELLPQL QN+QL P P+  IQ PYP  Y
Subjt:  NVPMVNNASMQYTPYVNQGPRPQMNQGCQAQKQQHTIVPKSQGDRT------------TNKPQFDPIPMTYTELLPQLIQNHQLMPKPMPQIQQPYPWCY

Query:  NPLS---------------------------------------------------NYQVNAINCLSNDNKQNVRDVMTPMKKLFDILLVNRYILAKPSHT
        +  +                                                   N Q+NAI C   ++K  V ++ TPM +LF+ILL + YI       
Subjt:  NPLS---------------------------------------------------NYQVNAINCLSNDNKQNVRDVMTPMKKLFDILLVNRYILAKPSHT

Query:  EATCDK---YNVNLSCPFHGGAKGHTLDQCSEFHEKIQELMNSRLLT
        E  C K   Y+ +L+C FH GAKGH+L+QC+ F  K+QEL++S++LT
Subjt:  EATCDK---YNVNLSCPFHGGAKGHTLDQCSEFHEKIQELMNSRLLT

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]1.0e-3037.66Show/hide
Query:  NVPMVNNASMQYTPYVNQGPRPQMNQGCQAQ-KQQHTIVPK-SQGDRTTNK-PQFDPIPMTYTELLPQLIQNHQLMPKPMPQIQQPYPWCY---------
        N P VN A+ QYT   +Q  RP  +QG Q +  QQ+T+  +  Q +R+T K  QFDPIPMTYTELLPQL QN+QL P P+  IQ PYP  Y         
Subjt:  NVPMVNNASMQYTPYVNQGPRPQMNQGCQAQ-KQQHTIVPK-SQGDRTTNK-PQFDPIPMTYTELLPQLIQNHQLMPKPMPQIQQPYPWCY---------

Query:  ---------------------------------------NPLSNY---QVNAINCLSNDNKQNVRDVMTPMKKLFDILLVNRYILAKPSHTEATCDKYNV
                                               NPL N+   Q+NA+ C   +++  V ++ TPM+ LF+IL  + Y+  +    +  C++Y+ 
Subjt:  ---------------------------------------NPLSNY---QVNAINCLSNDNKQNVRDVMTPMKKLFDILLVNRYILAKPSHTEATCDKYNV

Query:  NLSCPFHGGAKGHTLDQCSEFHEKIQELMNSRLLTILQA
        NL+CP+H GA+GH L+QCS F EK+QEL++ ++LT+ Q+
Subjt:  NLSCPFHGGAKGHTLDQCSEFHEKIQELMNSRLLTILQA

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]8.8e-3036.73Show/hide
Query:  NVPMVNNASMQYTPYVNQGPRPQMNQGCQAQKQQHTIVPKSQGDRT-------TNK-----PQFDPIPMTYTELLPQLIQNHQLMPKPMPQIQQPYPWCY
        N P VNNA+  Y+PY  Q  RP  +Q  Q         P+ Q   T       TN+      QFDPIPMTYTELLPQL QN+QL P P+  IQ PYP  Y
Subjt:  NVPMVNNASMQYTPYVNQGPRPQMNQGCQAQKQQHTIVPKSQGDRT-------TNK-----PQFDPIPMTYTELLPQLIQNHQLMPKPMPQIQQPYPWCY

Query:  ------------------------------------------------NPLSNY---QVNAINCLSNDNKQNVRDVMTPMKKLFDILLVNRYILAKPSHT
                                                        NPL N+   Q+NAI C   ++K  V D+ TPM +LF+ILL + Y+  +    
Subjt:  ------------------------------------------------NPLSNY---QVNAINCLSNDNKQNVRDVMTPMKKLFDILLVNRYILAKPSHT

Query:  EATCDKYNVNLSCPFHGGAKGHTLDQCSEFHEKIQELMNSRLLTI
              Y+ +L+CPFH GAKGH+L+QC+ F  K+QEL++S++LT+
Subjt:  EATCDKYNVNLSCPFHGGAKGHTLDQCSEFHEKIQELMNSRLLTI

XP_031737550.1 uncharacterized protein LOC116402440 [Cucumis sativus]1.1e-1932.86Show/hide
Query:  KSQGDRTTNKP-QFDPIPMTYTELLPQLIQNHQLMPKPMPQIQQPYPWCY-------------------------------------------------N
        + QG +T ++  +FDPIPMTYTELLPQL+QN QL P P+  IQ PYP  Y                                                 N
Subjt:  KSQGDRTTNKP-QFDPIPMTYTELLPQLIQNHQLMPKPMPQIQQPYPWCY-------------------------------------------------N

Query:  PLSNYQ---VNAINCLSNDNKQNVRDVMTPMKKLFDILLVNRYILAKPSHTEATCDKYNVNLSCPFHGGAKGHTLDQCSEFHEKIQELMNSRLLTIL--Q
        PL N++   VNAI+C     K  V ++  PM+ LF+ L    Y+  +        + Y+    C FH G  GH + QC  F  K+Q+ M+S++LT+   Q
Subjt:  PLSNYQ---VNAINCLSNDNKQNVRDVMTPMKKLFDILLVNRYILAKPSHTEATCDKYNVNLSCPFHGGAKGHTLDQCSEFHEKIQELMNSRLLTIL--Q

Query:  ASDFTTDDKICTV
          D   D+KICT+
Subjt:  ASDFTTDDKICTV

TrEMBL top hitse value%identityAlignment
A0A5A7V3W7 Retrotrans_gag domain-containing protein4.9e-1830.07Show/hide
Query:  FPNRVKHAPTNDQAGVPTSNNVSDLNVPMVNNASMQYTPYVNQGPRPQMNQGCQAQKQQHTIVPKSQGDRTTNKPQFDPIPMTYTELLPQLIQNHQLMPK
        FPN  KH     Q     +      NV  +   S      V++ P+P  +   +   Q     P S   R      FDPIPMTYTELLPQLIQN QL P 
Subjt:  FPNRVKHAPTNDQAGVPTSNNVSDLNVPMVNNASMQYTPYVNQGPRPQMNQGCQAQKQQHTIVPKSQGDRTTNKPQFDPIPMTYTELLPQLIQNHQLMPK

Query:  PMPQIQQPYPWCY-------------------------------------------------NPLSNYQ---VNAINCLSNDNKQNVRDVMTPMKKLFDI
        PM  IQ PYP  Y                                                 NPL N++   VNA++ L    K  V +++ PM+ LF+ 
Subjt:  PMPQIQQPYPWCY-------------------------------------------------NPLSNYQ---VNAINCLSNDNKQNVRDVMTPMKKLFDI

Query:  LLVNRYILAKPSHTEATCDKYNVNLSCPFHGGAKGHTLDQCSEFHEKIQELMNSRLLTIL--QASDFTTDDKICTV
        L    Y+  +        + Y+ +  C FH G  GH + QC +F  K+Q+LM+S++LT+   Q  D   D K+C +
Subjt:  LLVNRYILAKPSHTEATCDKYNVNLSCPFHGGAKGHTLDQCSEFHEKIQELMNSRLLTIL--QASDFTTDDKICTV

A0A5D3CXD6 Retrotrans_gag domain-containing protein6.1e-2140.25Show/hide
Query:  KSQGDRTTNKP-QFDPIPMTYTELLPQLIQNHQLMPKPMPQIQQPYPWCY-----------NPL---SNYQVNAINCLSNDNKQNVRDVMTPMKKLFDIL
        + QG +T +   +FD IPMTYTELLPQLIQN QL P PM  IQ PYP C+           NPL    N +VNA++ L    K  V + + P K LF+ L
Subjt:  KSQGDRTTNKP-QFDPIPMTYTELLPQLIQNHQLMPKPMPQIQQPYPWCY-----------NPL---SNYQVNAINCLSNDNKQNVRDVMTPMKKLFDIL

Query:  LVNRYILAKPSHTEATCDKYNVNLSCPFHGGAKGHTLDQCSEFHEKIQELMNSRLLTIL
            Y+  +        + Y+ +  C FH G  GH + QC +F  K+Q+LM+S++LT++
Subjt:  LVNRYILAKPSHTEATCDKYNVNLSCPFHGGAKGHTLDQCSEFHEKIQELMNSRLLTIL

A0A6J1D099 Ribonuclease H1.2e-2735.63Show/hide
Query:  NVPMVNNASMQYTPYVNQGPRPQMNQGCQAQKQQHTIVPKSQGDRT------------TNKPQFDPIPMTYTELLPQLIQNHQLMPKPMPQIQQPYPWCY
        N P VNNA+  Y PY +Q  RP  +Q  Q         P+ Q   T              + QFDPIPMTYTELLPQL QN+QL P P+  IQ PYP  Y
Subjt:  NVPMVNNASMQYTPYVNQGPRPQMNQGCQAQKQQHTIVPKSQGDRT------------TNKPQFDPIPMTYTELLPQLIQNHQLMPKPMPQIQQPYPWCY

Query:  NPLS---------------------------------------------------NYQVNAINCLSNDNKQNVRDVMTPMKKLFDILLVNRYILAKPSHT
        +  +                                                   N Q+NAI C   ++K  V D+ TPM +LF+ILL + YI       
Subjt:  NPLS---------------------------------------------------NYQVNAINCLSNDNKQNVRDVMTPMKKLFDILLVNRYILAKPSHT

Query:  EATCDK---YNVNLSCPFHGGAKGHTLDQCSEFHEKIQELMNSRLLT
        E  C K   Y+ +L+C FH GAKGH+L+QC+ F  K+QEL++S++LT
Subjt:  EATCDK---YNVNLSCPFHGGAKGHTLDQCSEFHEKIQELMNSRLLT

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222315.0e-3137.66Show/hide
Query:  NVPMVNNASMQYTPYVNQGPRPQMNQGCQAQ-KQQHTIVPK-SQGDRTTNK-PQFDPIPMTYTELLPQLIQNHQLMPKPMPQIQQPYPWCY---------
        N P VN A+ QYT   +Q  RP  +QG Q +  QQ+T+  +  Q +R+T K  QFDPIPMTYTELLPQL QN+QL P P+  IQ PYP  Y         
Subjt:  NVPMVNNASMQYTPYVNQGPRPQMNQGCQAQ-KQQHTIVPK-SQGDRTTNK-PQFDPIPMTYTELLPQLIQNHQLMPKPMPQIQQPYPWCY---------

Query:  ---------------------------------------NPLSNY---QVNAINCLSNDNKQNVRDVMTPMKKLFDILLVNRYILAKPSHTEATCDKYNV
                                               NPL N+   Q+NA+ C   +++  V ++ TPM+ LF+IL  + Y+  +    +  C++Y+ 
Subjt:  ---------------------------------------NPLSNY---QVNAINCLSNDNKQNVRDVMTPMKKLFDILLVNRYILAKPSHTEATCDKYNV

Query:  NLSCPFHGGAKGHTLDQCSEFHEKIQELMNSRLLTILQA
        NL+CP+H GA+GH L+QCS F EK+QEL++ ++LT+ Q+
Subjt:  NLSCPFHGGAKGHTLDQCSEFHEKIQELMNSRLLTILQA

A0A6J1E2J7 Ribonuclease H4.2e-3036.73Show/hide
Query:  NVPMVNNASMQYTPYVNQGPRPQMNQGCQAQKQQHTIVPKSQGDRT-------TNK-----PQFDPIPMTYTELLPQLIQNHQLMPKPMPQIQQPYPWCY
        N P VNNA+  Y+PY  Q  RP  +Q  Q         P+ Q   T       TN+      QFDPIPMTYTELLPQL QN+QL P P+  IQ PYP  Y
Subjt:  NVPMVNNASMQYTPYVNQGPRPQMNQGCQAQKQQHTIVPKSQGDRT-------TNK-----PQFDPIPMTYTELLPQLIQNHQLMPKPMPQIQQPYPWCY

Query:  ------------------------------------------------NPLSNY---QVNAINCLSNDNKQNVRDVMTPMKKLFDILLVNRYILAKPSHT
                                                        NPL N+   Q+NAI C   ++K  V D+ TPM +LF+ILL + Y+  +    
Subjt:  ------------------------------------------------NPLSNY---QVNAINCLSNDNKQNVRDVMTPMKKLFDILLVNRYILAKPSHT

Query:  EATCDKYNVNLSCPFHGGAKGHTLDQCSEFHEKIQELMNSRLLTI
              Y+ +L+CPFH GAKGH+L+QC+ F  K+QEL++S++LT+
Subjt:  EATCDKYNVNLSCPFHGGAKGHTLDQCSEFHEKIQELMNSRLLTI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGATAATATGGGTCTCAACCATCAACCTCGTCAGATAGTAGATAATTATTTGCTGCAGTATGCATCATATAGTTCCATGTTCAATGTTCCACCCAAGCAAATGCA
TTTTCTATTTCCCAATAGAGTGAAGCATGCCCCCACAAATGACCAAGCAGGGGTCCCAACCTCTAATAATGTTTCTGATCTTAATGTCCCGATGGTGAATAATGCATCTA
TGCAATATACTCCTTATGTGAATCAAGGTCCAAGACCTCAGATGAATCAAGGCTGTCAGGCTCAGAAGCAACAACACACCATTGTTCCTAAATCTCAAGGCGATAGAACA
ACAAATAAACCTCAGTTTGATCCGATCCCCATGACGTATACTGAACTTCTGCCTCAGTTAATACAGAATCATCAATTGATGCCCAAACCTATGCCACAAATTCAACAGCC
GTATCCATGGTGTTATAATCCTTTGTCAAATTATCAAGTGAACGCAATAAATTGTCTAAGCAACGACAATAAGCAGAATGTTAGGGATGTCATGACTCCCATGAAGAAAC
TTTTTGATATTCTTCTAGTTAACAGATACATCTTGGCAAAACCATCGCACACAGAAGCTACTTGTGACAAATATAATGTTAACTTATCTTGTCCTTTTCATGGTGGGGCA
AAAGGGCACACGTTGGATCAATGTTCTGAGTTTCATGAGAAAATCCAAGAGTTAATGAATTCAAGGCTTCTTACGATTTTGCAAGCCTCTGACTTCACCACAGATGACAA
AATATGTACAGTGGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGATAATATGGGTCTCAACCATCAACCTCGTCAGATAGTAGATAATTATTTGCTGCAGTATGCATCATATAGTTCCATGTTCAATGTTCCACCCAAGCAAATGCA
TTTTCTATTTCCCAATAGAGTGAAGCATGCCCCCACAAATGACCAAGCAGGGGTCCCAACCTCTAATAATGTTTCTGATCTTAATGTCCCGATGGTGAATAATGCATCTA
TGCAATATACTCCTTATGTGAATCAAGGTCCAAGACCTCAGATGAATCAAGGCTGTCAGGCTCAGAAGCAACAACACACCATTGTTCCTAAATCTCAAGGCGATAGAACA
ACAAATAAACCTCAGTTTGATCCGATCCCCATGACGTATACTGAACTTCTGCCTCAGTTAATACAGAATCATCAATTGATGCCCAAACCTATGCCACAAATTCAACAGCC
GTATCCATGGTGTTATAATCCTTTGTCAAATTATCAAGTGAACGCAATAAATTGTCTAAGCAACGACAATAAGCAGAATGTTAGGGATGTCATGACTCCCATGAAGAAAC
TTTTTGATATTCTTCTAGTTAACAGATACATCTTGGCAAAACCATCGCACACAGAAGCTACTTGTGACAAATATAATGTTAACTTATCTTGTCCTTTTCATGGTGGGGCA
AAAGGGCACACGTTGGATCAATGTTCTGAGTTTCATGAGAAAATCCAAGAGTTAATGAATTCAAGGCTTCTTACGATTTTGCAAGCCTCTGACTTCACCACAGATGACAA
AATATGTACAGTGGAGTAG
Protein sequenceShow/hide protein sequence
MDDNMGLNHQPRQIVDNYLLQYASYSSMFNVPPKQMHFLFPNRVKHAPTNDQAGVPTSNNVSDLNVPMVNNASMQYTPYVNQGPRPQMNQGCQAQKQQHTIVPKSQGDRT
TNKPQFDPIPMTYTELLPQLIQNHQLMPKPMPQIQQPYPWCYNPLSNYQVNAINCLSNDNKQNVRDVMTPMKKLFDILLVNRYILAKPSHTEATCDKYNVNLSCPFHGGA
KGHTLDQCSEFHEKIQELMNSRLLTILQASDFTTDDKICTVE