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Sed0009770 (gene) of Chayote v1 genome

Gene IDSed0009770
OrganismSechium edule (Chayote v1)
DescriptionATP-dependent RNA helicase DDX11-like protein
Genome locationLG12:29931912..29932660
RNA-Seq ExpressionSed0009770
SyntenySed0009770
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587958.1 hypothetical protein SDJN03_16523, partial [Cucurbita argyrosperma subsp. sororia]4.6e-3252.36Show/hide
Query:  MLLKASISTTKKFIKKTLCNFKSFFSNSYHRLPKPAPPNLAAAAGPTMDKDPTFHLIPSQKNLQNGSF--ANGN-------------MERVEK---SIKI
        M L  SISTTKKF KKTLCNFKSFFSN+YHRLPK  PP     AGP M KD          ++QNGSF  +NGN             M+RVEK   SIKI
Subjt:  MLLKASISTTKKFIKKTLCNFKSFFSNSYHRLPKPAPPNLAAAAGPTMDKDPTFHLIPSQKNLQNGSF--ANGN-------------MERVEK---SIKI

Query:  EVTQQNCESSKGEIMSN--------------LVAKKIKELEKLVGRNV----DIEEVLHYYSRLTSPTYLQIVDKFFIEVFAEFCSTQNGN
          T Q       E  S               LVAKKIKELEKL  RNV    DIEE+LHYYSRLT PTYL+IVD FF+++FAEFCS  + +
Subjt:  EVTQQNCESSKGEIMSN--------------LVAKKIKELEKLVGRNV----DIEEVLHYYSRLTSPTYLQIVDKFFIEVFAEFCSTQNGN

XP_008463389.1 PREDICTED: uncharacterized protein LOC103501556 [Cucumis melo]4.6e-3251.98Show/hide
Query:  MLLKASISTTKKFIKKTLCNFKSFFSNSYHRLPKPAPPNLAAAAGPTMDKDPTFHLIPSQKNLQNGSFANGN-----------------MERVEKS---I
        MLL+A+IS TKKF +KT+ NFKSFFSN+YHRLPK  PP  A  +   MDKD TFH I   + +QNGSF   N                 MERVEK+   +
Subjt:  MLLKASISTTKKFIKKTLCNFKSFFSNSYHRLPKPAPPNLAAAAGPTMDKDPTFHLIPSQKNLQNGSFANGN-----------------MERVEKS---I

Query:  KIEVT-----QQNCESSKGEIMSNLVAKKIKELEKLVGRNV----DIEEVLHYYSRLTSPTYLQIVDKFFIEVFAEF
        KI  T     Q+N E  + +    LVAK +KELEKL  RNV    DIEE+LHYYSRLTSPT+L++VDKF +++FAEF
Subjt:  KIEVT-----QQNCESSKGEIMSNLVAKKIKELEKLVGRNV----DIEEVLHYYSRLTSPTYLQIVDKFFIEVFAEF

XP_022145016.1 uncharacterized protein LOC111014544 [Momordica charantia]2.9e-3451.6Show/hide
Query:  MLLKASISTTKKFIKKTLCNFKSFFSNSYHRLPKPAPPNLAAAAGPTMDKDPTFHLIPSQKNLQNGSFANGNMERVEKSIKIEVTQ--------------
        MLL+ASIS TKKF KKT+CNFKSFFS SYHRLPK  PP    AAGP M+KD TF  I SQK +Q+G F   N   +    K+E TQ              
Subjt:  MLLKASISTTKKFIKKTLCNFKSFFSNSYHRLPKPAPPNLAAAAGPTMDKDPTFHLIPSQKNLQNGSFANGNMERVEKSIKIEVTQ--------------

Query:  -------------QNCESSKGEIMSN----LVAKKIKELEKLVGRNV----DIEEVLHYYSRLTSPTYLQIVDKFFIEVFAEFCSTQN
                     ++ ESS   I+      LVAKKIKELEKL  RNV    DIEE+LHYYSRLT P YL+IVDKFF E+FAEF +  +
Subjt:  -------------QNCESSKGEIMSN----LVAKKIKELEKLVGRNV----DIEEVLHYYSRLTSPTYLQIVDKFFIEVFAEFCSTQN

XP_022973644.1 uncharacterized protein LOC111472233 [Cucurbita maxima]2.7e-3252.36Show/hide
Query:  MLLKASISTTKKFIKKTLCNFKSFFSNSYHRLPKPAPPNLAAAAGPTMDKDPTFHLIPSQKNLQNGSF--ANGN-------------MERVEK---SIKI
        M L  SISTTKKF KKT+CNFKSFFSN+YHRLPK APP     AGP M KD           +QNGSF  +NGN             M+RVEK   SIKI
Subjt:  MLLKASISTTKKFIKKTLCNFKSFFSNSYHRLPKPAPPNLAAAAGPTMDKDPTFHLIPSQKNLQNGSF--ANGN-------------MERVEK---SIKI

Query:  EVTQQNCESSKGEIMSN--------------LVAKKIKELEKLVGRNV----DIEEVLHYYSRLTSPTYLQIVDKFFIEVFAEFCSTQNGN
          T Q       E  S               LVAKKIKELEKL  RNV    DIEE+LHYYSRLT PTYL+IVD FF+++FAEFCS  + +
Subjt:  EVTQQNCESSKGEIMSN--------------LVAKKIKELEKLVGRNV----DIEEVLHYYSRLTSPTYLQIVDKFFIEVFAEFCSTQNGN

XP_038880084.1 uncharacterized protein LOC120071772 [Benincasa hispida]1.7e-3956.52Show/hide
Query:  MLLKASISTTKKFIKKTLCNFKSFFSNSYHRLPKPAPPNLAAAAGPTMDKDPTFHLIPSQKNLQNGSFANGN-----------------MERVEKS---I
        M L+ASIS TKKF KKTLCNFKSFFSNSYHRLP+ APP LA +    MDKD TFH IPSQ+ +QNGSF   N                  ERVEK+   I
Subjt:  MLLKASISTTKKFIKKTLCNFKSFFSNSYHRLPKPAPPNLAAAAGPTMDKDPTFHLIPSQKNLQNGSFANGN-----------------MERVEKS---I

Query:  KIEV-----TQQNCESSKGEIMSNLVAKKIKELEKLVGRNV----DIEEVLHYYSRLTSPTYLQIVDKFFIEVFAEFCSTQNGN
        KIE      TQ+N E    +    LVAKK+KELEK+  RNV    DI+EVLHYYSRLTSPT+L+IVDKFF+++FAEF S  + +
Subjt:  KIEV-----TQQNCESSKGEIMSNLVAKKIKELEKLVGRNV----DIEEVLHYYSRLTSPTYLQIVDKFFIEVFAEFCSTQNGN

TrEMBL top hitse value%identityAlignment
A0A0A0LTA6 Uncharacterized protein4.9e-3252.54Show/hide
Query:  MLLKASISTTKKFIKKTLCNFKSFFSNSYHRLPKPAPPNLAAAAGPTMDKDPTFHLIPSQKNLQNGSFANGN-----------------MERVEKS---I
        MLL+A+IS TKKF +KTL NFKSFFSN+YHRLPK  PP  A +    MDK+ TFH I SQ+ +QNGS    N                  ERVEKS   +
Subjt:  MLLKASISTTKKFIKKTLCNFKSFFSNSYHRLPKPAPPNLAAAAGPTMDKDPTFHLIPSQKNLQNGSFANGN-----------------MERVEKS---I

Query:  KIEVTQQ-----NCESSKGEIMSNLVAKKIKELEKLVGRNV----DIEEVLHYYSRLTSPTYLQIVDKFFIEVFAEF
        K   T Q     N E    +    LVAK +KELEKL  RNV    DIEE+LHYYSRLTSPT+L+IVDKFF+++F EF
Subjt:  KIEVTQQ-----NCESSKGEIMSNLVAKKIKELEKLVGRNV----DIEEVLHYYSRLTSPTYLQIVDKFFIEVFAEF

A0A1S3CJL1 uncharacterized protein LOC1035015562.2e-3251.98Show/hide
Query:  MLLKASISTTKKFIKKTLCNFKSFFSNSYHRLPKPAPPNLAAAAGPTMDKDPTFHLIPSQKNLQNGSFANGN-----------------MERVEKS---I
        MLL+A+IS TKKF +KT+ NFKSFFSN+YHRLPK  PP  A  +   MDKD TFH I   + +QNGSF   N                 MERVEK+   +
Subjt:  MLLKASISTTKKFIKKTLCNFKSFFSNSYHRLPKPAPPNLAAAAGPTMDKDPTFHLIPSQKNLQNGSFANGN-----------------MERVEKS---I

Query:  KIEVT-----QQNCESSKGEIMSNLVAKKIKELEKLVGRNV----DIEEVLHYYSRLTSPTYLQIVDKFFIEVFAEF
        KI  T     Q+N E  + +    LVAK +KELEKL  RNV    DIEE+LHYYSRLTSPT+L++VDKF +++FAEF
Subjt:  KIEVT-----QQNCESSKGEIMSNLVAKKIKELEKLVGRNV----DIEEVLHYYSRLTSPTYLQIVDKFFIEVFAEF

A0A6J1CV44 uncharacterized protein LOC1110145441.4e-3451.6Show/hide
Query:  MLLKASISTTKKFIKKTLCNFKSFFSNSYHRLPKPAPPNLAAAAGPTMDKDPTFHLIPSQKNLQNGSFANGNMERVEKSIKIEVTQ--------------
        MLL+ASIS TKKF KKT+CNFKSFFS SYHRLPK  PP    AAGP M+KD TF  I SQK +Q+G F   N   +    K+E TQ              
Subjt:  MLLKASISTTKKFIKKTLCNFKSFFSNSYHRLPKPAPPNLAAAAGPTMDKDPTFHLIPSQKNLQNGSFANGNMERVEKSIKIEVTQ--------------

Query:  -------------QNCESSKGEIMSN----LVAKKIKELEKLVGRNV----DIEEVLHYYSRLTSPTYLQIVDKFFIEVFAEFCSTQN
                     ++ ESS   I+      LVAKKIKELEKL  RNV    DIEE+LHYYSRLT P YL+IVDKFF E+FAEF +  +
Subjt:  -------------QNCESSKGEIMSN----LVAKKIKELEKLVGRNV----DIEEVLHYYSRLTSPTYLQIVDKFFIEVFAEFCSTQN

A0A6J1F4Y2 uncharacterized protein LOC1114409098.4e-3251.83Show/hide
Query:  MLLKASISTTKKFIKKTLCNFKSFFSNSYHRLPKPAPPNLAAAAGPTMDKDPTFHLIPSQKNLQNGSF--ANGN-------------MERVEK---SIKI
        M L  SISTTKKF +KTLCNFKSFFSN+YHRLPK  PP     AGP M KD           +QNGSF  +NGN             M+RVEK   SIKI
Subjt:  MLLKASISTTKKFIKKTLCNFKSFFSNSYHRLPKPAPPNLAAAAGPTMDKDPTFHLIPSQKNLQNGSF--ANGN-------------MERVEK---SIKI

Query:  EVTQQNCESSKGEIMSN--------------LVAKKIKELEKLVGRNV----DIEEVLHYYSRLTSPTYLQIVDKFFIEVFAEFCSTQNGN
          T Q       E  S               LVAKKIKELEKL  RNV    DIEE+LHYYSRLT PTYL+IVD FF+++FAEFCS  + +
Subjt:  EVTQQNCESSKGEIMSN--------------LVAKKIKELEKLVGRNV----DIEEVLHYYSRLTSPTYLQIVDKFFIEVFAEFCSTQNGN

A0A6J1IF62 uncharacterized protein LOC1114722331.3e-3252.36Show/hide
Query:  MLLKASISTTKKFIKKTLCNFKSFFSNSYHRLPKPAPPNLAAAAGPTMDKDPTFHLIPSQKNLQNGSF--ANGN-------------MERVEK---SIKI
        M L  SISTTKKF KKT+CNFKSFFSN+YHRLPK APP     AGP M KD           +QNGSF  +NGN             M+RVEK   SIKI
Subjt:  MLLKASISTTKKFIKKTLCNFKSFFSNSYHRLPKPAPPNLAAAAGPTMDKDPTFHLIPSQKNLQNGSF--ANGN-------------MERVEK---SIKI

Query:  EVTQQNCESSKGEIMSN--------------LVAKKIKELEKLVGRNV----DIEEVLHYYSRLTSPTYLQIVDKFFIEVFAEFCSTQNGN
          T Q       E  S               LVAKKIKELEKL  RNV    DIEE+LHYYSRLT PTYL+IVD FF+++FAEFCS  + +
Subjt:  EVTQQNCESSKGEIMSN--------------LVAKKIKELEKLVGRNV----DIEEVLHYYSRLTSPTYLQIVDKFFIEVFAEFCSTQNGN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G15260.1 unknown protein2.5e-0427.74Show/hide
Query:  SISTTKKFIKKTLCNFKS-FFSNSYHRLPKPAP---PNLAAAAGPTMDKDPT---FHLIPSQKNLQNGSFANG-NMERVEKSIKIEVTQQNCESSKGEIM
        SI    +F+KKTL + KS   S+ Y  LP   P   P   +   P   +  T   + +I     + + +     N +  +K  K+    ++ +       
Subjt:  SISTTKKFIKKTLCNFKS-FFSNSYHRLPKPAP---PNLAAAAGPTMDKDPT---FHLIPSQKNLQNGSFANG-NMERVEKSIKIEVTQQNCESSKGEIM

Query:  SNLVAKKIKELEKLVGRNV----DIEEVLHYYSRLTSPTYLQIVDKFFIEVFAEF
         + +A+K+K+L  +  R+V    D+ E L  YS + SP YL IVD FF +++ EF
Subjt:  SNLVAKKIKELEKLVGRNV----DIEEVLHYYSRLTSPTYLQIVDKFFIEVFAEF

AT3G16070.1 unknown protein3.8e-0826.85Show/hide
Query:  TKKFIKKTLCNFKSFFSNSYHRLPKPAPP-NLAAAAGPTMDKDPTFHLIPSQKNLQNGSFANGNMERVEKSIKIEVTQQNCESSKGEIMSNLVAKKIKEL
        T  F  +TL + KS    +  +LP+P    +       ++D D   ++  S  N+      N     ++   K++  +Q  +  K E  S+  ++    +
Subjt:  TKKFIKKTLCNFKSFFSNSYHRLPKPAPP-NLAAAAGPTMDKDPTFHLIPSQKNLQNGSFANGNMERVEKSIKIEVTQQNCESSKGEIMSNLVAKKIKEL

Query:  EKLVG-----------RNVDIEEVLHYYSRLTSPTYLQIVDKFFIEVFA
        EK +            + +D+EE LHYYSR++SP YL IVDKFF ++++
Subjt:  EKLVG-----------RNVDIEEVLHYYSRLTSPTYLQIVDKFFIEVFA

AT3G24535.1 unknown protein1.7e-1333.54Show/hide
Query:  MLLKASISTTKKFIKKTLCNFKSFFSN--SYHRLPKPAPPNLAAAAGPTMDKDPTFHLIPSQKNLQNGSFANGNMERV----EKSIKIEVTQQNCESSKG
        M+L++SIS T+K  +KT+ NFKSFF N  +YH+LPK  P N +       +  P  ++I S  +  +  F     + V      S++  +  ++ E+   
Subjt:  MLLKASISTTKKFIKKTLCNFKSFFSN--SYHRLPKPAPPNLAAAAGPTMDKDPTFHLIPSQKNLQNGSFANGNMERV----EKSIKIEVTQQNCESSKG

Query:  EIMSNLVAKKIKELEKLVGRNV--------DIEEVLHYYSRLTSPTYLQIVDKFFIEVFAEFCS
        +   NLV  K+KE+EK++  ++        D+ E LH YSRL    YL +V+ FF+EV+++F S
Subjt:  EIMSNLVAKKIKELEKLVGRNV--------DIEEVLHYYSRLTSPTYLQIVDKFFIEVFAEFCS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCTAAAAGCTTCCATTTCCACCACCAAAAAATTCATCAAAAAAACCCTATGTAACTTCAAATCCTTCTTCTCCAACAGCTACCACAGGCTCCCGAAGCCGGCCCC
GCCCAACCTCGCTGCCGCCGCCGGCCCGACAATGGATAAAGACCCAACCTTTCATCTCATTCCATCTCAAAAAAACCTCCAAAATGGAAGCTTTGCTAATGGCAATATGG
AAAGAGTTGAAAAAAGCATCAAAATTGAAGTGACCCAACAAAATTGCGAATCGAGTAAGGGAGAAATTATGAGTAATTTGGTTGCTAAGAAAATCAAAGAGTTGGAGAAA
TTAGTGGGCAGAAATGTGGATATTGAAGAGGTTCTTCATTACTATTCTCGTCTCACTTCTCCAACATATCTTCAAATTGTTGATAAATTTTTCATCGAGGTTTTTGCTGA
ATTTTGTTCCACACAAAATGGAAATTTCAAATCCATTGCCTCAAAATCATCAGTGTGGCGTTAG
mRNA sequenceShow/hide mRNA sequence
CTCATATTTACTTGTCTTCTTCTTCTTCTCATTCTTCATCCAAAATAAAAACAAATCAAACTCTCAAAGAAAAACCCCACCAATGTTGCTAAAAGCTTCCATTTCCACCA
CCAAAAAATTCATCAAAAAAACCCTATGTAACTTCAAATCCTTCTTCTCCAACAGCTACCACAGGCTCCCGAAGCCGGCCCCGCCCAACCTCGCTGCCGCCGCCGGCCCG
ACAATGGATAAAGACCCAACCTTTCATCTCATTCCATCTCAAAAAAACCTCCAAAATGGAAGCTTTGCTAATGGCAATATGGAAAGAGTTGAAAAAAGCATCAAAATTGA
AGTGACCCAACAAAATTGCGAATCGAGTAAGGGAGAAATTATGAGTAATTTGGTTGCTAAGAAAATCAAAGAGTTGGAGAAATTAGTGGGCAGAAATGTGGATATTGAAG
AGGTTCTTCATTACTATTCTCGTCTCACTTCTCCAACATATCTTCAAATTGTTGATAAATTTTTCATCGAGGTTTTTGCTGAATTTTGTTCCACACAAAATGGAAATTTC
AAATCCATTGCCTCAAAATCATCAGTGTGGCGTTAGTGAGAAAATATTGAAGATCTTGTTTTGGAAATTTCGAGTCGAATTCAATTTCTTCCCGACCATGTTCCTTTGAT
TTCATTTTTCCTACGTTTGTGTTTCAGTGTTTATGGTTATTCATAAATTTTATGGCCGGTAGAGTTGTTTATGTTTGTGTGAGTGTGTG
Protein sequenceShow/hide protein sequence
MLLKASISTTKKFIKKTLCNFKSFFSNSYHRLPKPAPPNLAAAAGPTMDKDPTFHLIPSQKNLQNGSFANGNMERVEKSIKIEVTQQNCESSKGEIMSNLVAKKIKELEK
LVGRNVDIEEVLHYYSRLTSPTYLQIVDKFFIEVFAEFCSTQNGNFKSIASKSSVWR