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Sed0009791 (gene) of Chayote v1 genome

Gene IDSed0009791
OrganismSechium edule (Chayote v1)
Descriptionextensin-like
Genome locationLG03:2840580..2841358
RNA-Seq ExpressionSed0009791
SyntenySed0009791
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058957.1 hypothetical protein E6C27_scaffold98G001420 [Cucumis melo var. makuwa]2.4e-0952.43Show/hide
Query:  MGSLKLASYLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQF-KPPLPPSKRLTFPPPPGCTVGSPPSAEIKS-----PPLPPPPPKFQWPKRFTRKSPP
        MG   LASYL  LLIAF  L+LP+ LTA+ I  SSS   + +  PPLP       PPPP C  G+PP A+ ++     P L PPPP F+WP+RFT KSPP
Subjt:  MGSLKLASYLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQF-KPPLPPSKRLTFPPPPGCTVGSPPSAEIKS-----PPLPPPPPKFQWPKRFTRKSPP

Query:  PPF
        PPF
Subjt:  PPF

TYK29731.1 hypothetical protein E5676_scaffold63236G00010 [Cucumis melo var. makuwa]6.6e-0740.71Show/hide
Query:  MGSLKLASYLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQFKPPLPPSKRLT----FPPPPGCTVGSPPSA----------------------------
        MG + LASYL FLL AF SL+LPS LTA+ I  SS  K  ++KPP  P  RL      PPPP      PPS                             
Subjt:  MGSLKLASYLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQFKPPLPPSKRLT----FPPPPGCTVGSPPSA----------------------------

Query:  ---EIKSPPLP--------PPPPKFQWPKRFTRKSPPPPF
             KSPPLP         PPPK+ WP++F R SPPPPF
Subjt:  ---EIKSPPLP--------PPPPKFQWPKRFTRKSPPPPF

XP_022939147.1 extensin-like [Cucurbita moschata]6.6e-0749.09Show/hide
Query:  MGSLKLAS-YLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQFKPPLP-----PSKRLTFPPPPGCTVGSPPSAEIK-------SPPLPPPPPKFQWPKR
        MGSL L+S YL  LLIA LSLDLPS L A S+  S    P Q++PP P     PSK+L +PPP  CT  +PP    K       SPP   PP    W ++
Subjt:  MGSLKLAS-YLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQFKPPLP-----PSKRLTFPPPPGCTVGSPPSAEIK-------SPPLPPPPPKFQWPKR

Query:  FTRKSPPPPF
        FT  SPPPPF
Subjt:  FTRKSPPPPF

XP_022993352.1 extensin-like [Cucurbita maxima]5.0e-0750Show/hide
Query:  MGSLKLAS-YLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQFKPPLP-PSKRLTFPPPPGCTVGSPPSAEIK-----SPPLPPPPPKFQWPKRFTRKSP
        MGSL LAS YL  LLIA LSLDLPS L A S+  S    P +++PP P PS++L +PPP  CT  +PP  + +     SPP   PP    W ++FT  SP
Subjt:  MGSLKLAS-YLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQFKPPLP-PSKRLTFPPPPGCTVGSPPSAEIK-----SPPLPPPPPKFQWPKRFTRKSP

Query:  PPPF
        PPPF
Subjt:  PPPF

XP_023551507.1 extensin-3-like [Cucurbita pepo subsp. pepo]5.9e-0850Show/hide
Query:  MGSLKLAS-YLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQFKPPLP-----PSKRLTFPPPPGCT-VGSPPSAEIKSPPLPPPPPKFQWPKRFTRKSP
        MGSL L S YL  LLIA LSLDLPS L A S+  S    P Q++PP P     PSK+L +PPP  CT +  PP  + +    P PP    W ++FT KSP
Subjt:  MGSLKLAS-YLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQFKPPLP-----PSKRLTFPPPPGCT-VGSPPSAEIKSPPLPPPPPKFQWPKRFTRKSP

Query:  PPPF
        PPPF
Subjt:  PPPF

TrEMBL top hitse value%identityAlignment
A0A0A0KI69 Uncharacterized protein5.6e-1253.92Show/hide
Query:  MGSLKLASYLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQFKPPLPPSKRLTFPPPPGCTVGSPPSAEIKS-----PPLPPPPPKFQWPKRFTRKSPPP
        MG   LASYL  LLIAF  L+LPS LTA+ I  SSS   +++ PP  P      PPPP C  G+PP A+ ++     P L PPPPKF+WP+RFT KSPPP
Subjt:  MGSLKLASYLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQFKPPLPPSKRLTFPPPPGCTVGSPPSAEIKS-----PPLPPPPPKFQWPKRFTRKSPPP

Query:  PF
        PF
Subjt:  PF

A0A5A7UW72 Uncharacterized protein1.2e-0952.43Show/hide
Query:  MGSLKLASYLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQF-KPPLPPSKRLTFPPPPGCTVGSPPSAEIKS-----PPLPPPPPKFQWPKRFTRKSPP
        MG   LASYL  LLIAF  L+LP+ LTA+ I  SSS   + +  PPLP       PPPP C  G+PP A+ ++     P L PPPP F+WP+RFT KSPP
Subjt:  MGSLKLASYLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQF-KPPLPPSKRLTFPPPPGCTVGSPPSAEIKS-----PPLPPPPPKFQWPKRFTRKSPP

Query:  PPF
        PPF
Subjt:  PPF

A0A5D3E2A1 Uncharacterized protein3.2e-0740.71Show/hide
Query:  MGSLKLASYLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQFKPPLPPSKRLT----FPPPPGCTVGSPPSA----------------------------
        MG + LASYL FLL AF SL+LPS LTA+ I  SS  K  ++KPP  P  RL      PPPP      PPS                             
Subjt:  MGSLKLASYLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQFKPPLPPSKRLT----FPPPPGCTVGSPPSA----------------------------

Query:  ---EIKSPPLP--------PPPPKFQWPKRFTRKSPPPPF
             KSPPLP         PPPK+ WP++F R SPPPPF
Subjt:  ---EIKSPPLP--------PPPPKFQWPKRFTRKSPPPPF

A0A6J1FFZ9 extensin-like3.2e-0749.09Show/hide
Query:  MGSLKLAS-YLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQFKPPLP-----PSKRLTFPPPPGCTVGSPPSAEIK-------SPPLPPPPPKFQWPKR
        MGSL L+S YL  LLIA LSLDLPS L A S+  S    P Q++PP P     PSK+L +PPP  CT  +PP    K       SPP   PP    W ++
Subjt:  MGSLKLAS-YLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQFKPPLP-----PSKRLTFPPPPGCTVGSPPSAEIK-------SPPLPPPPPKFQWPKR

Query:  FTRKSPPPPF
        FT  SPPPPF
Subjt:  FTRKSPPPPF

A0A6J1JSJ5 extensin-like2.4e-0750Show/hide
Query:  MGSLKLAS-YLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQFKPPLP-PSKRLTFPPPPGCTVGSPPSAEIK-----SPPLPPPPPKFQWPKRFTRKSP
        MGSL LAS YL  LLIA LSLDLPS L A S+  S    P +++PP P PS++L +PPP  CT  +PP  + +     SPP   PP    W ++FT  SP
Subjt:  MGSLKLAS-YLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQFKPPLP-PSKRLTFPPPPGCTVGSPPSAEIK-----SPPLPPPPPKFQWPKRFTRKSP

Query:  PPPF
        PPPF
Subjt:  PPPF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTCTCTAAAATTAGCCTCCTATCTTTCATTTCTTCTCATTGCATTTCTGTCTTTAGATTTGCCTTCAACATTGACTGCATATTCTATTCGCTCATCTTCATCCCC
CAAGCCTTTTCAATTCAAACCTCCGCTACCGCCGTCTAAAAGACTCACGTTCCCTCCCCCTCCTGGCTGCACGGTGGGTTCACCACCGTCAGCCGAAATAAAGTCTCCAC
CACTGCCTCCACCGCCGCCCAAGTTTCAATGGCCCAAGAGATTTACCCGTAAATCTCCTCCACCTCCTTTCTAA
mRNA sequenceShow/hide mRNA sequence
TTCTAATTTACTCCTTTTTATTATTTATTTGTCGCATTTTTCATATAAAATGTGGGTGTTCGATGCCAGTTTCAAACTCACATACCTAAAACCAATCTTGAAAAGGGAAA
CGAAACAATGGGGTCTCTAAAATTAGCCTCCTATCTTTCATTTCTTCTCATTGCATTTCTGTCTTTAGATTTGCCTTCAACATTGACTGCATATTCTATTCGCTCATCTT
CATCCCCCAAGCCTTTTCAATTCAAACCTCCGCTACCGCCGTCTAAAAGACTCACGTTCCCTCCCCCTCCTGGCTGCACGGTGGGTTCACCACCGTCAGCCGAAATAAAG
TCTCCACCACTGCCTCCACCGCCGCCCAAGTTTCAATGGCCCAAGAGATTTACCCGTAAATCTCCTCCACCTCCTTTCTAAGGCATTACGAGTGAAGGTAAAAGTGATTG
ACCTTTTGTTTTGTTTTGTTTTTTAGTACAAATAGGGAGATGGAGACCACAAATTCTATGTAAAGGATATTGCCGCTATCAAATAAATAAAAGTTAAATATCGATTATGA
GATCGAACTTATGACCGTGGCTTTGTTCTTTTGGGGAAGATGTCACGTGGGGTTTACTCAATTTGTAACGTTGGATTGAAAATTAAAATGTTTATCACAAAGAGGCTTCG
TACTTACCTACCTTATTCTTTTATAAAAATTAATGTATTTCTGACTGAGCAATACTTGGTACATCCTAAACAATTTTATAAAGAGAGTTATCTGACATATTATAGATGCA
TGTTATGAG
Protein sequenceShow/hide protein sequence
MGSLKLASYLSFLLIAFLSLDLPSTLTAYSIRSSSSPKPFQFKPPLPPSKRLTFPPPPGCTVGSPPSAEIKSPPLPPPPPKFQWPKRFTRKSPPPPF