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Sed0009795 (gene) of Chayote v1 genome

Gene IDSed0009795
OrganismSechium edule (Chayote v1)
DescriptionRING-CH-type domain-containing protein
Genome locationLG03:2457552..2460167
RNA-Seq ExpressionSed0009795
SyntenySed0009795
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR011016 - Zinc finger, RING-CH-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602635.1 hypothetical protein SDJN03_07868, partial [Cucurbita argyrosperma subsp. sororia]1.6e-5867.18Show/hide
Query:  VSTA--AASPVSDDVRRCSGQSRAEV----------------------DLECGLAEMKLHLAKMERDCRICHLSTDASNQESGIPMELGCSCKDDLAAAH
        VSTA  AASP SDDVRRCS QS AE+                      DLECGL E+K+HLAKMERDCRICHLS DA+N ESGIP+ELGCSCKDDLAAAH
Subjt:  VSTA--AASPVSDDVRRCSGQSRAEV----------------------DLECGLAEMKLHLAKMERDCRICHLSTDASNQESGIPMELGCSCKDDLAAAH

Query:  KHS-----PVK---------SVDRNVNGTCETDSPEQHNELNDATTATTAATVVVPPHFTVARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
        KH       VK         S+  NV GTCE DS EQ NE ND TTATT A VVVPPH T ARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
Subjt:  KHS-----PVK---------SVDRNVNGTCETDSPEQHNELNDATTATTAATVVVPPHFTVARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS

XP_022938531.1 uncharacterized protein LOC111444740 [Cucurbita moschata]1.5e-5663.82Show/hide
Query:  MEQHVSTAAASP----VSDDVRRCSGQSRAEV--------------------DLECGLAEMKLHLAKMERDCRICHLSTDASNQESGIPMELGCSCKDDL
        +EQ   T+AA       S+DVR+CSGQSRAE+                    DLECGLAE+KLHL KMERDCRICHLS DASNQESGIP+ELGCSCKDDL
Subjt:  MEQHVSTAAASP----VSDDVRRCSGQSRAEV--------------------DLECGLAEMKLHLAKMERDCRICHLSTDASNQESGIPMELGCSCKDDL

Query:  AAAHKHSP--------------VKSVDRNVNGTCETDSPEQHNELNDATTATTAATVVVPPHFTVARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
        AAAHKH                  S+  NV  T E DS EQ N+ NDATTAT AA VVVPPH T ARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
Subjt:  AAAHKHSP--------------VKSVDRNVNGTCETDSPEQHNELNDATTATTAATVVVPPHFTVARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS

XP_022957596.1 uncharacterized protein LOC111458938 [Cucurbita moschata]2.1e-5867.53Show/hide
Query:  VSTA--AASPVSDDVRRCSGQSRAEV---------------------DLECGLAEMKLHLAKMERDCRICHLSTDASNQESGIPMELGCSCKDDLAAAHK
        VSTA  AASP SDDVRRCS QS AE+                     DLECGL E+K+HLAKMERDCRICHLS DA+N ESGIP+ELGCSCKDDLAAAHK
Subjt:  VSTA--AASPVSDDVRRCSGQSRAEV---------------------DLECGLAEMKLHLAKMERDCRICHLSTDASNQESGIPMELGCSCKDDLAAAHK

Query:  HS-----PVK---------SVDRNVNGTCETDSPEQHNELNDATTATTAATVVVPPHFTVARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
        H       VK         S+  NV  TCE DS EQ NE ND TTATTAA VVVPPH T ARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
Subjt:  HS-----PVK---------SVDRNVNGTCETDSPEQHNELNDATTATTAATVVVPPHFTVARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS

XP_022990745.1 uncharacterized protein LOC111487535 [Cucurbita maxima]1.4e-5766.84Show/hide
Query:  VSTAA--ASPVSDDVRRCSGQSRAEV--------------------DLECGLAEMKLHLAKMERDCRICHLSTDASNQESGIPMELGCSCKDDLAAAHKH
        VSTA   ASP SDDVRRCS QS AE+                    DLECGL E+K+HLAKMERDCRICHLS DA+N ESGIP+ELGCSCKDDLAAAHKH
Subjt:  VSTAA--ASPVSDDVRRCSGQSRAEV--------------------DLECGLAEMKLHLAKMERDCRICHLSTDASNQESGIPMELGCSCKDDLAAAHKH

Query:  S-----PVK---------SVDRNVNGTCETDSPEQHNELNDATTATTAATVVVPPHFTVARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
               VK         S+  NV  TCE DS EQ NE ND TTATTAA VVVPPH T  RNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
Subjt:  S-----PVK---------SVDRNVNGTCETDSPEQHNELNDATTATTAATVVVPPHFTVARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS

XP_023524419.1 uncharacterized protein LOC111788319 [Cucurbita pepo subsp. pepo]5.2e-5766.15Show/hide
Query:  VSTA--AASPVSDDVRRCSGQSRAEV----------------------DLECGLAEMKLHLAKMERDCRICHLSTDASNQESGIPMELGCSCKDDLAAAH
        VSTA  AASP SDDVRRCS QS AE+                      DLECGL E+K+HLAKMERDCRICHLS DA+N ESGIP+ELGCSCKDDLAAAH
Subjt:  VSTA--AASPVSDDVRRCSGQSRAEV----------------------DLECGLAEMKLHLAKMERDCRICHLSTDASNQESGIPMELGCSCKDDLAAAH

Query:  KHS-----PVK---------SVDRNVNGTCETDSPEQHNELNDATTATTAATVVVPPHFTVARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
        KH       VK         S+  NV  TCE DS EQ NE ND TTATTAA V+VPPH   ARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
Subjt:  KHS-----PVK---------SVDRNVNGTCETDSPEQHNELNDATTATTAATVVVPPHFTVARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS

TrEMBL top hitse value%identityAlignment
A0A0A0K8G0 RING-CH-type domain-containing protein6.4e-5364.37Show/hide
Query:  EQHVSTAAASPVSDDVRRCSGQSRAEVDLECGLAEMKLHLAKMERDCRICHLSTDASNQESGIPMELGCSCKDDLAAAHKHSP--------------VKS
        E  V+ AAA+ V         +   E+DLECGLAE+K+HLAK+E+DCRICHLS DASN ESGIP+ELGCSCKDDLAAAHKH                  S
Subjt:  EQHVSTAAASPVSDDVRRCSGQSRAEVDLECGLAEMKLHLAKMERDCRICHLSTDASNQESGIPMELGCSCKDDLAAAHKHSP--------------VKS

Query:  VDRNVNGTCETDSPEQHNELNDATTATTAATVVVPPHFTVARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
        +  NV GT E DS EQ NE N+ATTAT  A +V+PPH T ARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
Subjt:  VDRNVNGTCETDSPEQHNELNDATTATTAATVVVPPHFTVARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS

A0A6J1FEB0 uncharacterized protein LOC1114447407.3e-5763.82Show/hide
Query:  MEQHVSTAAASP----VSDDVRRCSGQSRAEV--------------------DLECGLAEMKLHLAKMERDCRICHLSTDASNQESGIPMELGCSCKDDL
        +EQ   T+AA       S+DVR+CSGQSRAE+                    DLECGLAE+KLHL KMERDCRICHLS DASNQESGIP+ELGCSCKDDL
Subjt:  MEQHVSTAAASP----VSDDVRRCSGQSRAEV--------------------DLECGLAEMKLHLAKMERDCRICHLSTDASNQESGIPMELGCSCKDDL

Query:  AAAHKHSP--------------VKSVDRNVNGTCETDSPEQHNELNDATTATTAATVVVPPHFTVARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
        AAAHKH                  S+  NV  T E DS EQ N+ NDATTAT AA VVVPPH T ARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
Subjt:  AAAHKHSP--------------VKSVDRNVNGTCETDSPEQHNELNDATTATTAATVVVPPHFTVARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS

A0A6J1GZN3 uncharacterized protein LOC1114589381.0e-5867.53Show/hide
Query:  VSTA--AASPVSDDVRRCSGQSRAEV---------------------DLECGLAEMKLHLAKMERDCRICHLSTDASNQESGIPMELGCSCKDDLAAAHK
        VSTA  AASP SDDVRRCS QS AE+                     DLECGL E+K+HLAKMERDCRICHLS DA+N ESGIP+ELGCSCKDDLAAAHK
Subjt:  VSTA--AASPVSDDVRRCSGQSRAEV---------------------DLECGLAEMKLHLAKMERDCRICHLSTDASNQESGIPMELGCSCKDDLAAAHK

Query:  HS-----PVK---------SVDRNVNGTCETDSPEQHNELNDATTATTAATVVVPPHFTVARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
        H       VK         S+  NV  TCE DS EQ NE ND TTATTAA VVVPPH T ARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
Subjt:  HS-----PVK---------SVDRNVNGTCETDSPEQHNELNDATTATTAATVVVPPHFTVARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS

A0A6J1JQX9 uncharacterized protein LOC1114875356.6e-5866.84Show/hide
Query:  VSTAA--ASPVSDDVRRCSGQSRAEV--------------------DLECGLAEMKLHLAKMERDCRICHLSTDASNQESGIPMELGCSCKDDLAAAHKH
        VSTA   ASP SDDVRRCS QS AE+                    DLECGL E+K+HLAKMERDCRICHLS DA+N ESGIP+ELGCSCKDDLAAAHKH
Subjt:  VSTAA--ASPVSDDVRRCSGQSRAEV--------------------DLECGLAEMKLHLAKMERDCRICHLSTDASNQESGIPMELGCSCKDDLAAAHKH

Query:  S-----PVK---------SVDRNVNGTCETDSPEQHNELNDATTATTAATVVVPPHFTVARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
               VK         S+  NV  TCE DS EQ NE ND TTATTAA VVVPPH T  RNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
Subjt:  S-----PVK---------SVDRNVNGTCETDSPEQHNELNDATTATTAATVVVPPHFTVARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS

A0A6J1JXH7 uncharacterized protein LOC1114891965.2e-5562.31Show/hide
Query:  MEQHVSTAAASP----VSDDVRRCSGQSRAEV--------------------DLECGLAEMKLHLAKMERDCRICHLSTDASNQESGIPMELGCSCKDDL
        +EQ   T+AA       SDDVR+CSGQSRAE+                    DLECGL+E+K+HL KM RDCRICHLS DASNQESGIP+ELGCSCKDDL
Subjt:  MEQHVSTAAASP----VSDDVRRCSGQSRAEV--------------------DLECGLAEMKLHLAKMERDCRICHLSTDASNQESGIPMELGCSCKDDL

Query:  AAAHKHSP--------------VKSVDRNVNGTCETDSPEQHNELNDATTATTAATVVVPPHFTVARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
        AAAHKH                  S+  NV  T E DS EQ N+ ND TTATTAA VVVPPH   ARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
Subjt:  AAAHKHSP--------------VKSVDRNVNGTCETDSPEQHNELNDATTATTAATVVVPPHFTVARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G37950.1 RING/FYVE/PHD zinc finger superfamily protein7.3e-1741.18Show/hide
Query:  AKMERDCRICHLSTDASNQESGIPMELGCSCKDDLAAAHKHSP--------------VKSVDRNVNGTCET--DSPEQHNELNDATTATTAATVVVPPHF
        A  E+DCRICHL  + S    G  +ELGCSCKDDLA AH+                  +SV RNV G  E    + E+    N   TA            
Subjt:  AKMERDCRICHLSTDASNQESGIPMELGCSCKDDLAAAHKHSP--------------VKSVDRNVNGTCET--DSPEQHNELNDATTATTAATVVVPPHF

Query:  TVARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
        TV  N WQ  R +N +LACMVF F ISW+FHF + S
Subjt:  TVARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS

AT5G01070.1 RING/FYVE/PHD zinc finger superfamily protein7.3e-0964.86Show/hide
Query:  ERDCRICHLSTDASNQESGIPMELGCSCKDDLAAAHK
        E+DCRICHL  ++S  E G PM LGCSCKDDL   HK
Subjt:  ERDCRICHLSTDASNQESGIPMELGCSCKDDLAAAHK

AT5G01070.2 RING/FYVE/PHD zinc finger superfamily protein4.1e-2043.85Show/hide
Query:  ERDCRICHLSTDASNQESGIPMELGCSCKDDLAAAHKHSPVKSVDRNVNGTCE------TDSPEQHNELNDATTATTAATV-------VVPPHFTVARNF
        E+DCRICHL  ++S  E G PM LGCSCKDDL   HK           N TCE       +  +  NE+   T  T    V       +V    +  R  
Subjt:  ERDCRICHLSTDASNQESGIPMELGCSCKDDLAAAHKHSPVKSVDRNVNGTCE------TDSPEQHNELNDATTATTAATV-------VVPPHFTVARNF

Query:  WQGHRFLNFLLACMVFAFVISWLFHFKIPS
         +G+RFLNFLL CMV AFVISW FHF +PS
Subjt:  WQGHRFLNFLLACMVFAFVISWLFHFKIPS

AT5G05830.1 RING/FYVE/PHD zinc finger superfamily protein2.3e-3952.44Show/hide
Query:  VSDDVRRCSGQ-SRAEVDLECGLAEMKLHLAKMERDCRICHLSTDASNQESGIPMELGCSCKDDLAAAHKH--------------SPVKSVDRNVNGTCE
        V D+ RR +      E+DLE GL E  +HL++ ERDCRICH+S DA+N ESG+P+ELGCSCK DLAAAHKH                  S+  NV G+ E
Subjt:  VSDDVRRCSGQ-SRAEVDLECGLAEMKLHLAKMERDCRICHLSTDASNQESGIPMELGCSCKDDLAAAHKH--------------SPVKSVDRNVNGTCE

Query:  TDSPEQHNELNDATTATTAATVVVPPHFTVARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
         +S E  NE N     T   +    P     R+FWQGHRFLNFLLACMVFAFVISWLFHF +PS
Subjt:  TDSPEQHNELNDATTATTAATVVVPPHFTVARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS

AT5G59000.1 RING/FYVE/PHD zinc finger superfamily protein2.0e-1432.27Show/hide
Query:  HVSTAAASP-----VSDDVRRCSGQSRAEVDLECG---LAEMKLHLA------------------KMERDCRICHL------------------STDASN
        H++    SP     +S D       S ++VDLE G     E +LH                    K  RDCRICHL                  S D  +
Subjt:  HVSTAAASP-----VSDDVRRCSGQSRAEVDLECG---LAEMKLHLA------------------KMERDCRICHL------------------STDASN

Query:  QES-------------GIPMELGCSCKDDLAAAHKHSPVKSVDRNVNGTCE-------TDSPEQHNELNDATTATTAATVVVPPHFTVARNFWQGHRFLN
        +E              G+P++LGCSCK DL  AH            N TCE         + EQ N  + A+T + AA        T  R  W G   +N
Subjt:  QES-------------GIPMELGCSCKDDLAAAHKHSPVKSVDRNVNGTCE-------TDSPEQHNELNDATTATTAATVVVPPHFTVARNFWQGHRFLN

Query:  FLLACMVFAFVISWLFHFKI
        FLLA MVFAFV+SWLFHFK+
Subjt:  FLLACMVFAFVISWLFHFKI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACAACACGTTTCTACCGCCGCCGCCTCGCCGGTTTCCGACGATGTGCGGCGGTGCTCCGGCCAGTCTAGGGCCGAGGTAGATCTGGAATGTGGGTTGGCTGAGAT
GAAGCTACATTTGGCCAAAATGGAAAGGGATTGCCGGATTTGTCATCTGAGTACGGATGCTTCTAATCAGGAATCTGGAATCCCCATGGAGTTGGGCTGTTCTTGTAAGG
ATGATTTGGCTGCTGCCCACAAGCACTCACCTGTGAAATCTGTGGACCGCAATGTTAATGGTACTTGTGAAACTGATTCCCCTGAGCAGCATAACGAGTTAAATGATGCA
ACGACAGCAACCACTGCAGCTACTGTCGTGGTGCCACCGCACTTTACAGTGGCTCGAAACTTCTGGCAGGGCCACAGGTTCCTGAATTTCTTGCTCGCCTGCATGGTTTT
CGCATTTGTCATATCATGGCTATTTCACTTCAAAATACCCTCAAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAACAACACGTTTCTACCGCCGCCGCCTCGCCGGTTTCCGACGATGTGCGGCGGTGCTCCGGCCAGTCTAGGGCCGAGGTAGATCTGGAATGTGGGTTGGCTGAGAT
GAAGCTACATTTGGCCAAAATGGAAAGGGATTGCCGGATTTGTCATCTGAGTACGGATGCTTCTAATCAGGAATCTGGAATCCCCATGGAGTTGGGCTGTTCTTGTAAGG
ATGATTTGGCTGCTGCCCACAAGCACTCACCTGTGAAATCTGTGGACCGCAATGTTAATGGTACTTGTGAAACTGATTCCCCTGAGCAGCATAACGAGTTAAATGATGCA
ACGACAGCAACCACTGCAGCTACTGTCGTGGTGCCACCGCACTTTACAGTGGCTCGAAACTTCTGGCAGGGCCACAGGTTCCTGAATTTCTTGCTCGCCTGCATGGTTTT
CGCATTTGTCATATCATGGCTATTTCACTTCAAAATACCCTCAAGATGA
Protein sequenceShow/hide protein sequence
MEQHVSTAAASPVSDDVRRCSGQSRAEVDLECGLAEMKLHLAKMERDCRICHLSTDASNQESGIPMELGCSCKDDLAAAHKHSPVKSVDRNVNGTCETDSPEQHNELNDA
TTATTAATVVVPPHFTVARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPSR