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Sed0009823 (gene) of Chayote v1 genome

Gene IDSed0009823
OrganismSechium edule (Chayote v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationLG07:34320443..34320718
RNA-Seq ExpressionSed0009823
SyntenySed0009823
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025805.1 senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa]1.7e-1761.45Show/hide
Query:  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIPIQELMMRVETIEDKTSRLGLFEH
        MS      KA+ DRLVELEE+MLYL EVPD+IRFLE RL+EI +K  MIDAV GR++G+PIQEL+ RV+T+E    R G  EH
Subjt:  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIPIQELMMRVETIEDKTSRLGLFEH

KAA0032146.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.3e-1763.16Show/hide
Query:  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIPIQELMMRVETIEDKTS
        MS     GKA+ DRLVE+EE+MLYL EVPD+IR+LE R+DEI +KA MIDAV GR++G+PIQEL+ RV+T+E+ T+
Subjt:  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIPIQELMMRVETIEDKTS

KAA0062476.1 uncharacterized protein E6C27_scaffold130G00660 [Cucumis melo var. makuwa]1.3e-1761.9Show/hide
Query:  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIPIQELMMRVETIEDKTSRLGLFEHG
        MS  K +GK +ADRLVEL+E+M YL EV D+I FL+ RL+EI +KA  IDAVT RLDG+PIQEL+ RV+T+E K  R G +EHG
Subjt:  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIPIQELMMRVETIEDKTSRLGLFEHG

TYK14391.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.3e-1763.16Show/hide
Query:  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIPIQELMMRVETIEDKTS
        MS     GKA+ DRLVE+EE+MLYL EVPD+IR+LE R+DEI +KA MIDAV GR++G+PIQEL+ RV+T+E+ T+
Subjt:  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIPIQELMMRVETIEDKTS

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]2.3e-1757.14Show/hide
Query:  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIPIQELMMRVETIEDKTSRLGLFEHG
        MS  K +GK+  DRLVE+EE +L+LRE+PDN+R++E RLDEI  KA  ID V  R+DG+ I+ELM+RVET+EDK  R    E G
Subjt:  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIPIQELMMRVETIEDKTSRLGLFEHG

TrEMBL top hitse value%identityAlignment
A0A5A7SQ54 Ty3-gypsy retrotransposon protein1.1e-1763.16Show/hide
Query:  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIPIQELMMRVETIEDKTS
        MS     GKA+ DRLVE+EE+MLYL EVPD+IR+LE R+DEI +KA MIDAV GR++G+PIQEL+ RV+T+E+ T+
Subjt:  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIPIQELMMRVETIEDKTS

A0A5D3CCT9 Senescence-specific cysteine protease sag398.4e-1861.45Show/hide
Query:  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIPIQELMMRVETIEDKTSRLGLFEH
        MS      KA+ DRLVELEE+MLYL EVPD+IRFLE RL+EI +K  MIDAV GR++G+PIQEL+ RV+T+E    R G  EH
Subjt:  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIPIQELMMRVETIEDKTSRLGLFEH

A0A5D3CRH9 Ty3-gypsy retrotransposon protein1.1e-1763.16Show/hide
Query:  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIPIQELMMRVETIEDKTS
        MS     GKA+ DRLVE+EE+MLYL EVPD+IR+LE R+DEI +KA MIDAV GR++G+PIQEL+ RV+T+E+ T+
Subjt:  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIPIQELMMRVETIEDKTS

A0A5D3DUL1 Uncharacterized protein6.4e-1861.9Show/hide
Query:  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIPIQELMMRVETIEDKTSRLGLFEHG
        MS  K +GK +ADRLVEL+E+M YL EV D+I FL+ RL+EI +KA  IDAVT RLDG+PIQEL+ RV+T+E K  R G +EHG
Subjt:  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIPIQELMMRVETIEDKTSRLGLFEHG

A0A6J1DLQ6 uncharacterized protein LOC1110223201.1e-1757.14Show/hide
Query:  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIPIQELMMRVETIEDKTSRLGLFEHG
        MS  K +GK+  DRLVE+EE +L+LRE+PDN+R++E RLDEI  KA  ID V  R+DG+ I+ELM+RVET+EDK  R    E G
Subjt:  MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIPIQELMMRVETIEDKTSRLGLFEHG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGAGAAGAAAGCGGTGGGCAAGGCCCGCGCCGACCGATTGGTTGAATTAGAGGAAGAGATGCTCTATCTGAGGGAGGTCCCTGACAATATTCGATTTTTAGAACC
TCGCCTGGACGAGATCGACAAAAAAGCCATTATGATTGATGCGGTAACTGGCCGCCTTGATGGGATTCCCATCCAAGAACTGATGATGAGGGTCGAGACCATAGAAGATA
AAACCTCACGACTCGGGCTGTTCGAGCATGGGATGACTCGTCAGGCTCTGTCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGAGAAGAAAGCGGTGGGCAAGGCCCGCGCCGACCGATTGGTTGAATTAGAGGAAGAGATGCTCTATCTGAGGGAGGTCCCTGACAATATTCGATTTTTAGAACC
TCGCCTGGACGAGATCGACAAAAAAGCCATTATGATTGATGCGGTAACTGGCCGCCTTGATGGGATTCCCATCCAAGAACTGATGATGAGGGTCGAGACCATAGAAGATA
AAACCTCACGACTCGGGCTGTTCGAGCATGGGATGACTCGTCAGGCTCTGTCGTGA
Protein sequenceShow/hide protein sequence
MSEKKAVGKARADRLVELEEEMLYLREVPDNIRFLEPRLDEIDKKAIMIDAVTGRLDGIPIQELMMRVETIEDKTSRLGLFEHGMTRQALS