; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0009847 (gene) of Chayote v1 genome

Gene IDSed0009847
OrganismSechium edule (Chayote v1)
DescriptiontraB domain-containing protein
Genome locationLG05:41055446..41056092
RNA-Seq ExpressionSed0009847
SyntenySed0009847
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604847.1 TraB domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia]3.2e-1846.81Show/hide
Query:  MLKDMDNVDRPTLKFQKASKKFPTLMDTILHERDQSVYVSYVAKSSQGSPISCRSSGERSPKRNREELAAACFGRLHSPIFTELFDDLPTFFILVTRMLQ
        MLKDMD+VD  TL  Q+ SK+FPTLMDT++HERDQ +  + +                R  K +R  +A    G L+                   + ++
Subjt:  MLKDMDNVDRPTLKFQKASKKFPTLMDTILHERDQSVYVSYVAKSSQGSPISCRSSGERSPKRNREELAAACFGRLHSPIFTELFDDLPTFFILVTRMLQ

Query:  LEDLYEVPEQKRVPVVKIFTSLGVAVAGVAIVLGIYLACRK
        L+DL E+PEQKRVPVVKIFTSLG+AVAGVAI+ GIYLACRK
Subjt:  LEDLYEVPEQKRVPVVKIFTSLGVAVAGVAIVLGIYLACRK
KAG7034961.1 TraB domain-containing protein [Cucurbita argyrosperma subsp. argyrosperma]3.2e-1846.81Show/hide
Query:  MLKDMDNVDRPTLKFQKASKKFPTLMDTILHERDQSVYVSYVAKSSQGSPISCRSSGERSPKRNREELAAACFGRLHSPIFTELFDDLPTFFILVTRMLQ
        MLKDMD+VD  TL  Q+ SK+FPTLMDT++HERDQ +  + +                R  K +R  +A    G L+                   + ++
Subjt:  MLKDMDNVDRPTLKFQKASKKFPTLMDTILHERDQSVYVSYVAKSSQGSPISCRSSGERSPKRNREELAAACFGRLHSPIFTELFDDLPTFFILVTRMLQ

Query:  LEDLYEVPEQKRVPVVKIFTSLGVAVAGVAIVLGIYLACRK
        L+DL E+PEQKRVPVVKIFTSLG+AVAGVAI+ GIYLACRK
Subjt:  LEDLYEVPEQKRVPVVKIFTSLGVAVAGVAIVLGIYLACRK
XP_022947978.1 traB domain-containing protein [Cucurbita moschata]3.2e-1846.81Show/hide
Query:  MLKDMDNVDRPTLKFQKASKKFPTLMDTILHERDQSVYVSYVAKSSQGSPISCRSSGERSPKRNREELAAACFGRLHSPIFTELFDDLPTFFILVTRMLQ
        MLKDMD+VD  TL  Q+ SK+FPTLMDT++HERDQ +  + +                R  K +R  +A    G L+                   + ++
Subjt:  MLKDMDNVDRPTLKFQKASKKFPTLMDTILHERDQSVYVSYVAKSSQGSPISCRSSGERSPKRNREELAAACFGRLHSPIFTELFDDLPTFFILVTRMLQ

Query:  LEDLYEVPEQKRVPVVKIFTSLGVAVAGVAIVLGIYLACRK
        L+DL E+PEQKRVPVVKIFTSLG+AVAGVAI+ GIYLACRK
Subjt:  LEDLYEVPEQKRVPVVKIFTSLGVAVAGVAIVLGIYLACRK
XP_022971024.1 traB domain-containing protein [Cucurbita maxima]3.2e-1846.81Show/hide
Query:  MLKDMDNVDRPTLKFQKASKKFPTLMDTILHERDQSVYVSYVAKSSQGSPISCRSSGERSPKRNREELAAACFGRLHSPIFTELFDDLPTFFILVTRMLQ
        MLKDMD+VD  TL  Q+ SK+FPTLMDT++HERDQ +  + +                R  K +R  +A    G L+                   + ++
Subjt:  MLKDMDNVDRPTLKFQKASKKFPTLMDTILHERDQSVYVSYVAKSSQGSPISCRSSGERSPKRNREELAAACFGRLHSPIFTELFDDLPTFFILVTRMLQ

Query:  LEDLYEVPEQKRVPVVKIFTSLGVAVAGVAIVLGIYLACRK
        L+DL E+PEQKRVPVVKIFTSLG+AVAGVAI+ GIYLACRK
Subjt:  LEDLYEVPEQKRVPVVKIFTSLGVAVAGVAIVLGIYLACRK
XP_023533229.1 traB domain-containing protein [Cucurbita pepo subsp. pepo]3.2e-1846.81Show/hide
Query:  MLKDMDNVDRPTLKFQKASKKFPTLMDTILHERDQSVYVSYVAKSSQGSPISCRSSGERSPKRNREELAAACFGRLHSPIFTELFDDLPTFFILVTRMLQ
        MLKDMD+VD  TL  Q+ SK+FPTLMDT++HERDQ +  + +                R  K +R  +A    G L+                   + ++
Subjt:  MLKDMDNVDRPTLKFQKASKKFPTLMDTILHERDQSVYVSYVAKSSQGSPISCRSSGERSPKRNREELAAACFGRLHSPIFTELFDDLPTFFILVTRMLQ

Query:  LEDLYEVPEQKRVPVVKIFTSLGVAVAGVAIVLGIYLACRK
        L+DL E+PEQKRVPVVKIFTSLG+AVAGVAI+ GIYLACRK
Subjt:  LEDLYEVPEQKRVPVVKIFTSLGVAVAGVAIVLGIYLACRK
TrEMBL top hitse value%identityAlignment
A0A1S3C338 traB domain-containing protein1.1e-1646.53Show/hide
Query:  MLKDMDNVDRPTLKFQKASKKFPTLMDTILHERDQ--SVYVSYVAKSSQGSPISCRSSGERSP-KRNREELAAACFGRLHSPIFTELFDDLPTFFILVTR
        MLKDMD+VD  TL  Q+ SK++PTLMDT++HERDQ  S  +  VAK  Q S ++    G  S  K+N ++                              
Subjt:  MLKDMDNVDRPTLKFQKASKKFPTLMDTILHERDQ--SVYVSYVAKSSQGSPISCRSSGERSP-KRNREELAAACFGRLHSPIFTELFDDLPTFFILVTR

Query:  MLQLEDLYEVPEQKRVPVVKIFTSLGVAVAGVAIVLGIYLACRK
         + LEDL E+P QKRVPV+KIFTS+GVAVAGVAIV G+YLAC+K
Subjt:  MLQLEDLYEVPEQKRVPVVKIFTSLGVAVAGVAIVLGIYLACRK
A0A5D3BJE9 TraB domain-containing protein1.1e-1646.53Show/hide
Query:  MLKDMDNVDRPTLKFQKASKKFPTLMDTILHERDQ--SVYVSYVAKSSQGSPISCRSSGERSP-KRNREELAAACFGRLHSPIFTELFDDLPTFFILVTR
        MLKDMD+VD  TL  Q+ SK++PTLMDT++HERDQ  S  +  VAK  Q S ++    G  S  K+N ++                              
Subjt:  MLKDMDNVDRPTLKFQKASKKFPTLMDTILHERDQ--SVYVSYVAKSSQGSPISCRSSGERSP-KRNREELAAACFGRLHSPIFTELFDDLPTFFILVTR

Query:  MLQLEDLYEVPEQKRVPVVKIFTSLGVAVAGVAIVLGIYLACRK
         + LEDL E+P QKRVPV+KIFTS+GVAVAGVAIV G+YLAC+K
Subjt:  MLQLEDLYEVPEQKRVPVVKIFTSLGVAVAGVAIVLGIYLACRK
A0A6J1CGW1 traB domain-containing protein1.3e-1748.94Show/hide
Query:  MLKDMDNVDRPTLKFQKASKKFPTLMDTILHERDQSVYVSYVAKSSQGSPISCRSSGERSPKRNREELAAACFGRLHSPIFTELFDDLPTFFILVTRMLQ
        MLKDMD+VD  TL  Q+ SK+FPTLMDT++HERDQ  Y+S              S+  R  K +   +A    G+ H     + +    T          
Subjt:  MLKDMDNVDRPTLKFQKASKKFPTLMDTILHERDQSVYVSYVAKSSQGSPISCRSSGERSPKRNREELAAACFGRLHSPIFTELFDDLPTFFILVTRMLQ

Query:  LEDLYEVPEQKRVPVVKIFTSLGVAVAGVAIVLGIYLACRK
        L+DL E+PEQKRVPVVKIFTS+GVAVAGVAIV GIYLAC+K
Subjt:  LEDLYEVPEQKRVPVVKIFTSLGVAVAGVAIVLGIYLACRK
A0A6J1G839 traB domain-containing protein1.5e-1846.81Show/hide
Query:  MLKDMDNVDRPTLKFQKASKKFPTLMDTILHERDQSVYVSYVAKSSQGSPISCRSSGERSPKRNREELAAACFGRLHSPIFTELFDDLPTFFILVTRMLQ
        MLKDMD+VD  TL  Q+ SK+FPTLMDT++HERDQ +  + +                R  K +R  +A    G L+                   + ++
Subjt:  MLKDMDNVDRPTLKFQKASKKFPTLMDTILHERDQSVYVSYVAKSSQGSPISCRSSGERSPKRNREELAAACFGRLHSPIFTELFDDLPTFFILVTRMLQ

Query:  LEDLYEVPEQKRVPVVKIFTSLGVAVAGVAIVLGIYLACRK
        L+DL E+PEQKRVPVVKIFTSLG+AVAGVAI+ GIYLACRK
Subjt:  LEDLYEVPEQKRVPVVKIFTSLGVAVAGVAIVLGIYLACRK
A0A6J1I7E3 traB domain-containing protein1.5e-1846.81Show/hide
Query:  MLKDMDNVDRPTLKFQKASKKFPTLMDTILHERDQSVYVSYVAKSSQGSPISCRSSGERSPKRNREELAAACFGRLHSPIFTELFDDLPTFFILVTRMLQ
        MLKDMD+VD  TL  Q+ SK+FPTLMDT++HERDQ +  + +                R  K +R  +A    G L+                   + ++
Subjt:  MLKDMDNVDRPTLKFQKASKKFPTLMDTILHERDQSVYVSYVAKSSQGSPISCRSSGERSPKRNREELAAACFGRLHSPIFTELFDDLPTFFILVTRMLQ

Query:  LEDLYEVPEQKRVPVVKIFTSLGVAVAGVAIVLGIYLACRK
        L+DL E+PEQKRVPVVKIFTSLG+AVAGVAI+ GIYLACRK
Subjt:  LEDLYEVPEQKRVPVVKIFTSLGVAVAGVAIVLGIYLACRK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G05270.1 TraB family protein4.3e-1338.73Show/hide
Query:  MLKDMDNVDRPTLKFQKASKKFPTLMDTILHERDQSVYVSYVAKSSQGSPISCRSSGERSPKRNREELAAACFGRLHSPIFTELFDDLPTFFILVTRMLQ
        MLKDMDNVD  TL  Q+ SK+FPTLMDTI+HERDQ +  S +  +S  S +                   A  G+ H     + +           + + 
Subjt:  MLKDMDNVDRPTLKFQKASKKFPTLMDTILHERDQSVYVSYVAKSSQGSPISCRSSGERSPKRNREELAAACFGRLHSPIFTELFDDLPTFFILVTRMLQ

Query:  LEDLYEVPEQKRVPVVK-IFTSLGVAVAGVAIVLGIYLACRK
        + DL E+P  K V  +K I +S+ VAVAG AIV GI L+ RK
Subjt:  LEDLYEVPEQKRVPVVK-IFTSLGVAVAGVAIVLGIYLACRK
AT2G32340.1 TraB family protein3.0e-0629.5Show/hide
Query:  MLKDMDNVDRPTLKFQKASKKFPTLMDTILHERDQSVYVSYVAKSSQGSPISCRSSGERSPKRNREELAAACFGRLHSPIFTELFDDLPTFFILVTRMLQ
        MLKD+ + D  TL  Q+ S +FPTLM+T++HERD+ +    +  +S+ S +                   A  GR H     + ++          + + 
Subjt:  MLKDMDNVDRPTLKFQKASKKFPTLMDTILHERDQSVYVSYVAKSSQGSPISCRSSGERSPKRNREELAAACFGRLHSPIFTELFDDLPTFFILVTRMLQ

Query:  LEDLYEVPEQKRVPVVK-IFTSLGVAVAGVAIVLGIYLA
        +++L E+P  + +  VK I   + V V G AIV G+YLA
Subjt:  LEDLYEVPEQKRVPVVK-IFTSLGVAVAGVAIVLGIYLA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAAGGATATGGACAATGTTGACAGGCCCACACTCAAATTTCAAAAGGCAAGCAAGAAGTTTCCCACATTGATGGACACCATTCTGCACGAGCGAGATCAGTCGGT
TTATGTCAGCTACGTTGCTAAGAGTAGCCAAGGATCACCAATCAGTTGTCGCAGTAGTGGGGAAAGGTCACCTAAGAGGAATCGAGAAGAATTGGCAGCAGCCTGTTTCG
GTAGGTTACACTCTCCCATTTTTACCGAACTCTTTGACGATCTACCTACGTTCTTTATATTAGTTACTCGAATGTTGCAGCTCGAGGATCTTTACGAAGTGCCTGAACAA
AAACGAGTCCCTGTTGTGAAGATCTTTACCTCACTAGGGGTAGCAGTTGCTGGAGTTGCAATCGTATTGGGCATCTACCTTGCTTGCAGAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAAGGATATGGACAATGTTGACAGGCCCACACTCAAATTTCAAAAGGCAAGCAAGAAGTTTCCCACATTGATGGACACCATTCTGCACGAGCGAGATCAGTCGGT
TTATGTCAGCTACGTTGCTAAGAGTAGCCAAGGATCACCAATCAGTTGTCGCAGTAGTGGGGAAAGGTCACCTAAGAGGAATCGAGAAGAATTGGCAGCAGCCTGTTTCG
GTAGGTTACACTCTCCCATTTTTACCGAACTCTTTGACGATCTACCTACGTTCTTTATATTAGTTACTCGAATGTTGCAGCTCGAGGATCTTTACGAAGTGCCTGAACAA
AAACGAGTCCCTGTTGTGAAGATCTTTACCTCACTAGGGGTAGCAGTTGCTGGAGTTGCAATCGTATTGGGCATCTACCTTGCTTGCAGAAAATAA
Protein sequenceShow/hide protein sequence
MLKDMDNVDRPTLKFQKASKKFPTLMDTILHERDQSVYVSYVAKSSQGSPISCRSSGERSPKRNREELAAACFGRLHSPIFTELFDDLPTFFILVTRMLQLEDLYEVPEQ
KRVPVVKIFTSLGVAVAGVAIVLGIYLACRK