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Sed0009890 (gene) of Chayote v1 genome

Gene IDSed0009890
OrganismSechium edule (Chayote v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationLG06:15178144..15178602
RNA-Seq ExpressionSed0009890
SyntenySed0009890
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN70755.1 hypothetical protein VITISV_014700 [Vitis vinifera]1.3e-1441.22Show/hide
Query:  KLKGFKLKVKEWNHHTFGHHKELTVKLQNEINTLDNKEEESTLIEFNCERRLSIKAELLSLSAREAILWQQNCKAKWLIDGDANSSLFHKYMACNRRRNS
        KL+  K K+K+WN +TFG  KE    + +EI  +D  E+E  L      +R+  K EL  L  RE I W+Q  K KW+ DGD NS LFHK     R RN 
Subjt:  KLKGFKLKVKEWNHHTFGHHKELTVKLQNEINTLDNKEEESTLIEFNCERRLSIKAELLSLSAREAILWQQNCKAKWLIDGDANSSLFHKYMACNRRRNS

Query:  ITEILSSSGNCLTNGEDIETIIIQFFKSLYT
        I  + +  G  L N E I   I+ +FK LY+
Subjt:  ITEILSSSGNCLTNGEDIETIIIQFFKSLYT

CAN70928.1 hypothetical protein VITISV_016057 [Vitis vinifera]2.7e-1541.22Show/hide
Query:  KLKGFKLKVKEWNHHTFGHHKELTVKLQNEINTLDNKEEESTLIEFNCERRLSIKAELLSLSAREAILWQQNCKAKWLIDGDANSSLFHKYMACNRRRNS
        KL+  K K+K+WN +TFG  KE    + +EI  +D  E+E  L      +R+ IK EL  L  RE I W+Q  K KW+ DGD NS LFHK     + RN 
Subjt:  KLKGFKLKVKEWNHHTFGHHKELTVKLQNEINTLDNKEEESTLIEFNCERRLSIKAELLSLSAREAILWQQNCKAKWLIDGDANSSLFHKYMACNRRRNS

Query:  ITEILSSSGNCLTNGEDIETIIIQFFKSLYT
        I  + +  G  L N E I   I+ +FK LY+
Subjt:  ITEILSSSGNCLTNGEDIETIIIQFFKSLYT

CAN77570.1 hypothetical protein VITISV_008516 [Vitis vinifera]1.0e-1440.46Show/hide
Query:  KLKGFKLKVKEWNHHTFGHHKELTVKLQNEINTLDNKEEESTLIEFNCERRLSIKAELLSLSAREAILWQQNCKAKWLIDGDANSSLFHKYMACNRRRNS
        KL+  K K+K+WN +TFG  KE    + +EI  +D  E+E  L      +R+  K EL  L  RE I W+Q  K KW+ DGD NS LFHK     + RN 
Subjt:  KLKGFKLKVKEWNHHTFGHHKELTVKLQNEINTLDNKEEESTLIEFNCERRLSIKAELLSLSAREAILWQQNCKAKWLIDGDANSSLFHKYMACNRRRNS

Query:  ITEILSSSGNCLTNGEDIETIIIQFFKSLYT
        I  + +  G  L N E I   I+ +FK LY+
Subjt:  ITEILSSSGNCLTNGEDIETIIIQFFKSLYT

KAA0035247.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.7e-1530.99Show/hide
Query:  LKGFKLKVKEWNHHTFGHHKELTVKLQNEINTLDNKEEESTLIEFNCERRLSIKAELLSLSAREAILWQQNCKAKWLIDGDANSSLFHKYMACNRRRNSI
        LK     +KEW H+    +      L  EI+++D  E +  +   + ++R+S+K+ELLS+   +A++W Q  + +W + GD N++ FH+    N+R+N I
Subjt:  LKGFKLKVKEWNHHTFGHHKELTVKLQNEINTLDNKEEESTLIEFNCERRLSIKAELLSLSAREAILWQQNCKAKWLIDGDANSSLFHKYMACNRRRNSI

Query:  TEILSSSGNCLTNGEDIETIIIQFFKSLYTKIDYRDLIPTNI
          I   +G  L +  DI  I I  F+++YTK +Y +++  N+
Subjt:  TEILSSSGNCLTNGEDIETIIIQFFKSLYTKIDYRDLIPTNI

RVX05721.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]3.5e-1535.29Show/hide
Query:  KLKGFKLKVKEWNHHTFGHHKELTVKLQNEINTLDNKEEESTLIEFNCERRLSIKAELLSLSAREAILWQQNCKAKWLIDGDANSSLFHKYMACNRRRNS
        KLK  KLK+KEWN  TFG  KE    +  +++ +D  E+E  L       R   + EL  +  +E + W+Q  + KW+ +GD NS  FH+   C R R  
Subjt:  KLKGFKLKVKEWNHHTFGHHKELTVKLQNEINTLDNKEEESTLIEFNCERRLSIKAELLSLSAREAILWQQNCKAKWLIDGDANSSLFHKYMACNRRRNS

Query:  ITEILSSSGNCLTNGEDIETIIIQFFKSLYTK-------IDYRDLIPTNIEDG
        I  ++S  G  L N EDI   I+ FF +LY+K       ++  D +P + E G
Subjt:  ITEILSSSGNCLTNGEDIETIIIQFFKSLYTK-------IDYRDLIPTNIEDG

TrEMBL top hitse value%identityAlignment
A0A438J9S5 Transposon TX1 uncharacterized 149 kDa protein1.7e-1535.29Show/hide
Query:  KLKGFKLKVKEWNHHTFGHHKELTVKLQNEINTLDNKEEESTLIEFNCERRLSIKAELLSLSAREAILWQQNCKAKWLIDGDANSSLFHKYMACNRRRNS
        KLK  KLK+KEWN  TFG  KE    +  +++ +D  E+E  L       R   + EL  +  +E + W+Q  + KW+ +GD NS  FH+   C R R  
Subjt:  KLKGFKLKVKEWNHHTFGHHKELTVKLQNEINTLDNKEEESTLIEFNCERRLSIKAELLSLSAREAILWQQNCKAKWLIDGDANSSLFHKYMACNRRRNS

Query:  ITEILSSSGNCLTNGEDIETIIIQFFKSLYTK-------IDYRDLIPTNIEDG
        I  ++S  G  L N EDI   I+ FF +LY+K       ++  D +P + E G
Subjt:  ITEILSSSGNCLTNGEDIETIIIQFFKSLYTK-------IDYRDLIPTNIEDG

A0A5D3DFM9 LINE-1 retrotransposable element ORF2 protein1.3e-1530.99Show/hide
Query:  LKGFKLKVKEWNHHTFGHHKELTVKLQNEINTLDNKEEESTLIEFNCERRLSIKAELLSLSAREAILWQQNCKAKWLIDGDANSSLFHKYMACNRRRNSI
        LK     +KEW H+    +      L  EI+++D  E +  +   + ++R+S+K+ELLS+   +A++W Q  + +W + GD N++ FH+    N+R+N I
Subjt:  LKGFKLKVKEWNHHTFGHHKELTVKLQNEINTLDNKEEESTLIEFNCERRLSIKAELLSLSAREAILWQQNCKAKWLIDGDANSSLFHKYMACNRRRNSI

Query:  TEILSSSGNCLTNGEDIETIIIQFFKSLYTKIDYRDLIPTNI
          I   +G  L +  DI  I I  F+++YTK +Y +++  N+
Subjt:  TEILSSSGNCLTNGEDIETIIIQFFKSLYTKIDYRDLIPTNI

A5BZP6 Reverse transcriptase domain-containing protein6.5e-1541.22Show/hide
Query:  KLKGFKLKVKEWNHHTFGHHKELTVKLQNEINTLDNKEEESTLIEFNCERRLSIKAELLSLSAREAILWQQNCKAKWLIDGDANSSLFHKYMACNRRRNS
        KL+  K K+K+WN +TFG  KE    + +EI  +D  E+E  L      +R+  K EL  L  RE I W+Q  K KW+ DGD NS LFHK     R RN 
Subjt:  KLKGFKLKVKEWNHHTFGHHKELTVKLQNEINTLDNKEEESTLIEFNCERRLSIKAELLSLSAREAILWQQNCKAKWLIDGDANSSLFHKYMACNRRRNS

Query:  ITEILSSSGNCLTNGEDIETIIIQFFKSLYT
        I  + +  G  L N E I   I+ +FK LY+
Subjt:  ITEILSSSGNCLTNGEDIETIIIQFFKSLYT

A5C4A5 Reverse transcriptase domain-containing protein5.0e-1540.46Show/hide
Query:  KLKGFKLKVKEWNHHTFGHHKELTVKLQNEINTLDNKEEESTLIEFNCERRLSIKAELLSLSAREAILWQQNCKAKWLIDGDANSSLFHKYMACNRRRNS
        KL+  K K+K+WN +TFG  KE    + +EI  +D  E+E  L      +R+  K EL  L  RE I W+Q  K KW+ DGD NS LFHK     + RN 
Subjt:  KLKGFKLKVKEWNHHTFGHHKELTVKLQNEINTLDNKEEESTLIEFNCERRLSIKAELLSLSAREAILWQQNCKAKWLIDGDANSSLFHKYMACNRRRNS

Query:  ITEILSSSGNCLTNGEDIETIIIQFFKSLYT
        I  + +  G  L N E I   I+ +FK LY+
Subjt:  ITEILSSSGNCLTNGEDIETIIIQFFKSLYT

A5C6D8 Reverse transcriptase domain-containing protein1.3e-1541.22Show/hide
Query:  KLKGFKLKVKEWNHHTFGHHKELTVKLQNEINTLDNKEEESTLIEFNCERRLSIKAELLSLSAREAILWQQNCKAKWLIDGDANSSLFHKYMACNRRRNS
        KL+  K K+K+WN +TFG  KE    + +EI  +D  E+E  L      +R+ IK EL  L  RE I W+Q  K KW+ DGD NS LFHK     + RN 
Subjt:  KLKGFKLKVKEWNHHTFGHHKELTVKLQNEINTLDNKEEESTLIEFNCERRLSIKAELLSLSAREAILWQQNCKAKWLIDGDANSSLFHKYMACNRRRNS

Query:  ITEILSSSGNCLTNGEDIETIIIQFFKSLYT
        I  + +  G  L N E I   I+ +FK LY+
Subjt:  ITEILSSSGNCLTNGEDIETIIIQFFKSLYT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATTGAAAGGCTTTAAATTGAAAGTTAAGGAATGGAACCACCATACGTTTGGGCATCATAAAGAATTAACTGTTAAACTCCAAAACGAGATCAATACCCTTGACAA
TAAGGAGGAAGAATCGACCTTAATTGAATTTAATTGTGAAAGAAGATTATCTATCAAGGCTGAGCTGCTTTCTTTATCGGCTAGAGAAGCAATTTTGTGGCAACAAAATT
GCAAGGCAAAATGGTTGATTGATGGTGATGCAAATTCTAGTCTTTTCCATAAATACATGGCTTGTAACAGAAGAAGGAATAGCATTACAGAAATATTATCCAGCAGTGGC
AACTGCCTTACAAATGGGGAGGACATTGAAACTATCATCATCCAGTTCTTCAAATCTTTATACACGAAGATAGACTACAGAGACTTGATCCCTACAAATATCGAGGATGG
ACGCCAAGGAAGCCTATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAATTGAAAGGCTTTAAATTGAAAGTTAAGGAATGGAACCACCATACGTTTGGGCATCATAAAGAATTAACTGTTAAACTCCAAAACGAGATCAATACCCTTGACAA
TAAGGAGGAAGAATCGACCTTAATTGAATTTAATTGTGAAAGAAGATTATCTATCAAGGCTGAGCTGCTTTCTTTATCGGCTAGAGAAGCAATTTTGTGGCAACAAAATT
GCAAGGCAAAATGGTTGATTGATGGTGATGCAAATTCTAGTCTTTTCCATAAATACATGGCTTGTAACAGAAGAAGGAATAGCATTACAGAAATATTATCCAGCAGTGGC
AACTGCCTTACAAATGGGGAGGACATTGAAACTATCATCATCCAGTTCTTCAAATCTTTATACACGAAGATAGACTACAGAGACTTGATCCCTACAAATATCGAGGATGG
ACGCCAAGGAAGCCTATAG
Protein sequenceShow/hide protein sequence
MKLKGFKLKVKEWNHHTFGHHKELTVKLQNEINTLDNKEEESTLIEFNCERRLSIKAELLSLSAREAILWQQNCKAKWLIDGDANSSLFHKYMACNRRRNSITEILSSSG
NCLTNGEDIETIIIQFFKSLYTKIDYRDLIPTNIEDGRQGSL