; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0009954 (gene) of Chayote v1 genome

Gene IDSed0009954
OrganismSechium edule (Chayote v1)
DescriptionMediator of RNA polymerase II transcription subunit 20
Genome locationLG03:12063000..12066144
RNA-Seq ExpressionSed0009954
SyntenySed0009954
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0006383 - transcription by RNA polymerase III (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0016592 - mediator complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003713 - transcription coactivator activity (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsIPR013921 - Mediator complex, subunit Med20


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061469.1 mediator of RNA polymerase II transcription subunit 20a-like isoform X1 [Cucumis melo var. makuwa]3.9e-10889.09Show/hide
Query:  MSLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADLPRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEK
        M LKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQ    A+ PRDFLGI LPEQPNKYYL+IRG+RIVLEA+F+IQ+IMEK
Subjt:  MSLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADLPRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEK

Query:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT
        LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLP SSMEKSRQ+M+EF +VWQEAMSKSSLPGRFMHIE NFAEYGLSD+YTPQHT
Subjt:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT

Query:  AVQYANVIAQLIATVQAVRN
        AVQY NV+AQLIATVQAV++
Subjt:  AVQYANVIAQLIATVQAVRN

XP_004141069.1 mediator of RNA polymerase II transcription subunit 20a [Cucumis sativus]3.9e-10890Show/hide
Query:  MSLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADLPRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEK
        M LKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQ    A+ PRDFLGI LPEQPNKYYL+IRG+RIVLEA+F+IQ+IMEK
Subjt:  MSLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADLPRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEK

Query:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT
        LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLP SSMEKSRQVMEEF +VWQEAMSKSSLPGRFMHIE NFAEYGLSDYYT QHT
Subjt:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT

Query:  AVQYANVIAQLIATVQAVRN
        AVQY NV+AQLIATVQAV++
Subjt:  AVQYANVIAQLIATVQAVRN

XP_008459711.1 PREDICTED: mediator of RNA polymerase II transcription subunit 20a-like isoform X1 [Cucumis melo]3.9e-10889.09Show/hide
Query:  MSLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADLPRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEK
        M LKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQ    A+ PRDFLGI LPEQPNKYYL+IRG+RIVLEA+F+IQ+IMEK
Subjt:  MSLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADLPRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEK

Query:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT
        LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLP SSMEKSRQ+M+EF +VWQEAMSKSSLPGRFMHIE NFAEYGLSD+YTPQHT
Subjt:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT

Query:  AVQYANVIAQLIATVQAVRN
        AVQY NV+AQLIATVQAV++
Subjt:  AVQYANVIAQLIATVQAVRN

XP_022946745.1 mediator of RNA polymerase II transcription subunit 20a-like [Cucurbita moschata]1.8e-10889.55Show/hide
Query:  MSLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADLPRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEK
        M LKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRD  +   + PRDFLGI +PEQPNKYYL+IRG+RIVLEA+F+IQ+IMEK
Subjt:  MSLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADLPRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEK

Query:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT
        LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLP SSMEKS+QVMEEF EVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYT QHT
Subjt:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT

Query:  AVQYANVIAQLIATVQAVRN
        AVQYANV+AQLIATVQAV++
Subjt:  AVQYANVIAQLIATVQAVRN

XP_038889134.1 mediator of RNA polymerase II transcription subunit 20a-like isoform X1 [Benincasa hispida]4.2e-11091.36Show/hide
Query:  MSLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADLPRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEK
        M LKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQ L  A+ PRDFLGI LPEQPNKYYL+IRG+RIVLEA+F+IQ+IMEK
Subjt:  MSLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADLPRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEK

Query:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT
        LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLP SSMEKSR+VMEEF EVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYT QHT
Subjt:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT

Query:  AVQYANVIAQLIATVQAVRN
        AVQYANV+AQLIATVQAV++
Subjt:  AVQYANVIAQLIATVQAVRN

TrEMBL top hitse value%identityAlignment
A0A0A0LHQ1 Mediator of RNA polymerase II transcription subunit 201.9e-10890Show/hide
Query:  MSLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADLPRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEK
        M LKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQ    A+ PRDFLGI LPEQPNKYYL+IRG+RIVLEA+F+IQ+IMEK
Subjt:  MSLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADLPRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEK

Query:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT
        LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLP SSMEKSRQVMEEF +VWQEAMSKSSLPGRFMHIE NFAEYGLSDYYT QHT
Subjt:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT

Query:  AVQYANVIAQLIATVQAVRN
        AVQY NV+AQLIATVQAV++
Subjt:  AVQYANVIAQLIATVQAVRN

A0A1S3CAW6 Mediator of RNA polymerase II transcription subunit 201.9e-10889.09Show/hide
Query:  MSLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADLPRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEK
        M LKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQ    A+ PRDFLGI LPEQPNKYYL+IRG+RIVLEA+F+IQ+IMEK
Subjt:  MSLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADLPRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEK

Query:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT
        LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLP SSMEKSRQ+M+EF +VWQEAMSKSSLPGRFMHIE NFAEYGLSD+YTPQHT
Subjt:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT

Query:  AVQYANVIAQLIATVQAVRN
        AVQY NV+AQLIATVQAV++
Subjt:  AVQYANVIAQLIATVQAVRN

A0A5D3CH02 Mediator of RNA polymerase II transcription subunit 201.9e-10889.09Show/hide
Query:  MSLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADLPRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEK
        M LKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQ    A+ PRDFLGI LPEQPNKYYL+IRG+RIVLEA+F+IQ+IMEK
Subjt:  MSLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADLPRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEK

Query:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT
        LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLP SSMEKSRQ+M+EF +VWQEAMSKSSLPGRFMHIE NFAEYGLSD+YTPQHT
Subjt:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT

Query:  AVQYANVIAQLIATVQAVRN
        AVQY NV+AQLIATVQAV++
Subjt:  AVQYANVIAQLIATVQAVRN

A0A6J1G4U3 Mediator of RNA polymerase II transcription subunit 208.6e-10989.55Show/hide
Query:  MSLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADLPRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEK
        M LKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRD  +   + PRDFLGI +PEQPNKYYL+IRG+RIVLEA+F+IQ+IMEK
Subjt:  MSLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADLPRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEK

Query:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT
        LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLP SSMEKS+QVMEEF EVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYT QHT
Subjt:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT

Query:  AVQYANVIAQLIATVQAVRN
        AVQYANV+AQLIATVQAV++
Subjt:  AVQYANVIAQLIATVQAVRN

A0A6J1KEU1 Mediator of RNA polymerase II transcription subunit 208.6e-10989.55Show/hide
Query:  MSLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADLPRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEK
        M LKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRD  +   + PRDFLGI +PEQPNKYYL+IRG+RIVLEA+F+IQ+IMEK
Subjt:  MSLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADLPRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEK

Query:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT
        LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLP SSMEKS+QVMEEF EVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYT QHT
Subjt:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT

Query:  AVQYANVIAQLIATVQAVRN
        AVQYANV+AQLIATVQAV++
Subjt:  AVQYANVIAQLIATVQAVRN

SwissProt top hitse value%identityAlignment
Q17LR9 Mediator of RNA polymerase II transcription subunit 202.5e-0425.18Show/hide
Query:  EQPNKYYLVI--RGKRIVLEAEFSIQSIMEKLQ---SYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVW
        EQP   + ++    K+I L  +     +M ++    + K +  +  +G +++ GDF +++G V    S+N +G+++E+EY P        ++M EFL+ +
Subjt:  EQPNKYYLVI--RGKRIVLEAEFSIQSIMEKLQ---SYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVW

Query:  QEAMSKSSLPGRF-MHIEPNFAEYGLSDYYTPQHTAVQY
          +   +++P  F   I  N      +D Y P  T  QY
Subjt:  QEAMSKSSLPGRF-MHIEPNFAEYGLSDYYTPQHTAVQY

Q54FL3 Putative mediator of RNA polymerase II transcription subunit 202.2e-0828.43Show/hide
Query:  LNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADL-PRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEKLQSYKLRVALNFEGFQYQLG
        L E+++ +E + G+K     +T T    +  +++   ++L PR+F  +   E+P K + V R    ++E +  + SI+EK  SYK R        +Y+LG
Subjt:  LNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADL-PRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEKLQSYKLRVALNFEGFQYQLG

Query:  DFQLRVGKVVPNNSENLRGIVMEIEY----LPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDY------YTPQHTAVQYANV
        DF +RVG +V      +RGI++E+EY     P +S     +++ EF+         +   G F   EP    +  S Y      Y+  HT+ QY N+
Subjt:  DFQLRVGKVVPNNSENLRGIVMEIEY----LPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDY------YTPQHTAVQYANV

Q6NPF4 Mediator of RNA polymerase II transcription subunit 20a2.8e-8872.15Show/hide
Query:  MSLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADLPRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEK
        M +KWVLHWQPN GSTV+SQILNE +QCVESI+GVK G+WKATL +YKP+L+DQ  Q  + PRDFLGI L +QPNKYY +IR +RIVLEA+ SIQ IMEK
Subjt:  MSLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADLPRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEK

Query:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT
        LQSYK +VAL F+GFQYQLGDF+LRVGKVVP +SEN+RGIVME+EYLP SSMEK+++VMEEFLE+W EA++K SLPG+F++I+ NF E+GL D YTPQHT
Subjt:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT

Query:  AVQYANVIAQLIATVQAVR
        AV+YA V+A +IATVQAVR
Subjt:  AVQYANVIAQLIATVQAVR

Q7Q6Y4 Mediator of RNA polymerase II transcription subunit 203.2e-0425.53Show/hide
Query:  EQPNKYYLVI--RGKRIVLEAEFSIQSIMEKL---QSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVW
        EQP   + ++    K+I L  +     +M ++    + K +  +  +G +++ GDF +++G V    S+N +G+++E+EY P        ++M EFL+ +
Subjt:  EQPNKYYLVI--RGKRIVLEAEFSIQSIMEKL---QSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVW

Query:  QEAMSKSSLPGRFMH---IEPNFAEYGLSDYYTPQHTAVQY
          +   +S+P  F     I PN ++   ++ Y P  T  QY
Subjt:  QEAMSKSSLPGRFMH---IEPNFAEYGLSDYYTPQHTAVQY

Q9M0S0 Mediator of RNA polymerase II transcription subunit 20b1.5e-7863.93Show/hide
Query:  MSLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADLPRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEK
        M +KW+LHWQPN GST +SQILNEV+Q +ES++GVK G WKATL +YKP+L+DQ  Q A+ PR+F+GI LPE+P+KYY VIR +RIV+EA+ SIQ IME 
Subjt:  MSLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADLPRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEK

Query:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT
        LQSYK +++  FEG +YQLGDF+LRVGKVVP ++E +RG+VME+EYLP SSM  ++++MEEFLE+WQEAMSK SLPG+F++ E NF ++GL D YTPQHT
Subjt:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT

Query:  AVQYANVIAQLIATVQAVR
        AV YA  +A L+A +QA R
Subjt:  AVQYANVIAQLIATVQAVR

Arabidopsis top hitse value%identityAlignment
AT2G28020.1 BEST Arabidopsis thaliana protein match is: TATA-binding related factor (TRF) of subunit 20 of Mediator complex (TAIR:AT2G28230.1)1.5e-1764.71Show/hide
Query:  MEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHTAVQ-YANVIAQLIATVQAV
        ME +R+VMEEFLE+W EA++K SLPG+F++ + NF E+GL D YTPQHTAV+ YA V+A +IATVQAV
Subjt:  MEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHTAVQ-YANVIAQLIATVQAV

AT2G28230.1 TATA-binding related factor (TRF) of subunit 20 of Mediator complex2.0e-8972.15Show/hide
Query:  MSLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADLPRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEK
        M +KWVLHWQPN GSTV+SQILNE +QCVESI+GVK G+WKATL +YKP+L+DQ  Q  + PRDFLGI L +QPNKYY +IR +RIVLEA+ SIQ IMEK
Subjt:  MSLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADLPRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEK

Query:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT
        LQSYK +VAL F+GFQYQLGDF+LRVGKVVP +SEN+RGIVME+EYLP SSMEK+++VMEEFLE+W EA++K SLPG+F++I+ NF E+GL D YTPQHT
Subjt:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT

Query:  AVQYANVIAQLIATVQAVR
        AV+YA V+A +IATVQAVR
Subjt:  AVQYANVIAQLIATVQAVR

AT4G09070.1 TATA-binding related factor (TRF) of subunit 20 of Mediator complex1.1e-7963.93Show/hide
Query:  MSLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADLPRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEK
        M +KW+LHWQPN GST +SQILNEV+Q +ES++GVK G WKATL +YKP+L+DQ  Q A+ PR+F+GI LPE+P+KYY VIR +RIV+EA+ SIQ IME 
Subjt:  MSLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADLPRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEK

Query:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT
        LQSYK +++  FEG +YQLGDF+LRVGKVVP ++E +RG+VME+EYLP SSM  ++++MEEFLE+WQEAMSK SLPG+F++ E NF ++GL D YTPQHT
Subjt:  LQSYKLRVALNFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHT

Query:  AVQYANVIAQLIATVQAVR
        AV YA  +A L+A +QA R
Subjt:  AVQYANVIAQLIATVQAVR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCTAAAATGGGTTTTGCATTGGCAACCAAATGCCGGCAGCACCGTTAACAGTCAGATCCTCAACGAAGTTTCGCAGTGTGTGGAGAGCATCCATGGCGTCAAAGG
CGGCAAATGGAAAGCTACTCTCACTTTCTACAAACCCATCTTACGAGATCAGATCTTACAGCCGGCCGATTTGCCGCGCGATTTCCTCGGAATTTGGCTGCCGGAGCAGC
CGAACAAGTATTATCTTGTAATTCGTGGGAAACGGATCGTATTGGAAGCTGAGTTTTCGATTCAGAGTATAATGGAGAAGTTGCAGTCTTATAAATTGCGGGTTGCTCTT
AATTTCGAGGGTTTCCAATACCAATTAGGGGATTTTCAACTCAGAGTGGGGAAAGTTGTTCCCAACAATTCAGAGAATTTGAGAGGAATAGTTATGGAGATTGAGTACCT
CCCAAATTCTTCAATGGAGAAATCAAGACAGGTGATGGAGGAGTTCTTGGAAGTATGGCAAGAAGCCATGTCGAAAAGCTCATTACCAGGTCGTTTCATGCACATAGAAC
CAAACTTTGCAGAATATGGACTCTCGGATTACTACACTCCCCAACACACAGCAGTTCAATACGCCAATGTGATAGCTCAGCTAATCGCTACTGTTCAAGCCGTAAGAAAT
TAG
mRNA sequenceShow/hide mRNA sequence
AAAGTTTAGAGAAGGAAAGTATTTACTTTTGGGCTGCTTATGTACCTTCTTCATTCATTCCATTGGGCTGTCCACAAAATTTGCAACTTGTTCATAACCGATCAGCCTCC
ATCGTCTCGCTGCGATTTTGTACGCCCAAGATCATGTCGCTAAAATGGGTTTTGCATTGGCAACCAAATGCCGGCAGCACCGTTAACAGTCAGATCCTCAACGAAGTTTC
GCAGTGTGTGGAGAGCATCCATGGCGTCAAAGGCGGCAAATGGAAAGCTACTCTCACTTTCTACAAACCCATCTTACGAGATCAGATCTTACAGCCGGCCGATTTGCCGC
GCGATTTCCTCGGAATTTGGCTGCCGGAGCAGCCGAACAAGTATTATCTTGTAATTCGTGGGAAACGGATCGTATTGGAAGCTGAGTTTTCGATTCAGAGTATAATGGAG
AAGTTGCAGTCTTATAAATTGCGGGTTGCTCTTAATTTCGAGGGTTTCCAATACCAATTAGGGGATTTTCAACTCAGAGTGGGGAAAGTTGTTCCCAACAATTCAGAGAA
TTTGAGAGGAATAGTTATGGAGATTGAGTACCTCCCAAATTCTTCAATGGAGAAATCAAGACAGGTGATGGAGGAGTTCTTGGAAGTATGGCAAGAAGCCATGTCGAAAA
GCTCATTACCAGGTCGTTTCATGCACATAGAACCAAACTTTGCAGAATATGGACTCTCGGATTACTACACTCCCCAACACACAGCAGTTCAATACGCCAATGTGATAGCT
CAGCTAATCGCTACTGTTCAAGCCGTAAGAAATTAGGATAAAACATTTTTCTTCTGTTATCAGTCTAAGATTTGAAATTTGTTTCTGAGACAAGATTCAAATTCTGTGAT
TTTTTTTAGAAATCTGAAAATCCGAACTCTGCTCTAATATACTCGAAATAACTATACCCAGTGTTTCAAAAGGCGCGCGCTGCGCCTTGTGGGTTTTTGAAGCGCAAGAC
TCCCGTACTAGTTATTCGAAGCGCAACACAATTTATTCAAAACTTTTGAATACCTTAAATAACTTAATTTTTA
Protein sequenceShow/hide protein sequence
MSLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQILQPADLPRDFLGIWLPEQPNKYYLVIRGKRIVLEAEFSIQSIMEKLQSYKLRVAL
NFEGFQYQLGDFQLRVGKVVPNNSENLRGIVMEIEYLPNSSMEKSRQVMEEFLEVWQEAMSKSSLPGRFMHIEPNFAEYGLSDYYTPQHTAVQYANVIAQLIATVQAVRN