CuGenDBv2

Gene ID	Sed0009957
Organism	Sechium edule (Chayote v1)
Description	Tubulin alpha chain
Genome location	LG13:2763643..2768754
RNA-Seq Expression	Sed0009957
Synteny	Sed0009957
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6576903.1 hypothetical protein SDJN03_24477, partial [Cucurbita argyrosperma subsp. sororia]

2.6e-96

86.49

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Query:  MATLQILKSTVSPLSISQTNFGAQSRRFSSEFDSSRRFVRFHGRRRNLRYGCVCRRLSFRCAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDSNS
        MA LQILKSTVSP SISQ  FG+QS RF SE DS+RRF   HGRRR+LRYGCV RRLSFRCAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLED+++
Subjt:  MATLQILKSTVSPLSISQTNFGAQSRRFSSEFDSSRRFVRFHGRRRNLRYGCVCRRLSFRCAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDSNS

Query:  TDFGLGG-LTRENRDFSGRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVVTISFFFALYFFFGPSFVHDG-KAPISPP
        TDFGLGG +  ENRDFS RSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLT+GGTFFLGFWPLIVVT+SFFFALYFF GPSFVHDG K PISPP
Subjt:  TDFGLGG-LTRENRDFSGRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVVTISFFFALYFFFGPSFVHDG-KAPISPP

Query:  PYVDPYALLEDERISQIAPRLN
        PYVDPYALLEDERISQ+APR+N
Subjt:  PYVDPYALLEDERISQIAPRLN

XP_022149320.1 uncharacterized protein LOC111017763 [Momordica charantia]

6.1e-101

87.33

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Query:  MATLQILKSTVSPLSISQTNFGAQSRRFSSEFDSSRRFVRFHGRRRNLRYGCVCRRLSFRCAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDSNS
        MA LQ+LKS VSPLSISQ NFG +S RF S+ DS+RRFVRFHGRRR+LRYGCVCRRLSFRCAAQD+DKESNGEEPPESLFMKELKKRG+TPTSLLEDSNS
Subjt:  MATLQILKSTVSPLSISQTNFGAQSRRFSSEFDSSRRFVRFHGRRRNLRYGCVCRRLSFRCAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDSNS

Query:  TDFGLGG-LTRENRDFSGRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVVTISFFFALYFFFGPSFVHDGKAPISPPP
         DFGLGG +T E RDFS RSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLT+GGTFFLGFWPLIV+T+SFFFALYFFFGPSFVH+G+ PISPPP
Subjt:  TDFGLGG-LTRENRDFSGRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVVTISFFFALYFFFGPSFVHDGKAPISPPP

Query:  YVDPYALLEDERISQIAPRLN
        YVDPYALLEDERISQ APR+N
Subjt:  YVDPYALLEDERISQIAPRLN

XP_022922737.1 uncharacterized protein LOC111430640 [Cucurbita moschata]

5.9e-96

86.04

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Query:  MATLQILKSTVSPLSISQTNFGAQSRRFSSEFDSSRRFVRFHGRRRNLRYGCVCRRLSFRCAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDSNS
        MA LQILKSTVSP SISQ  FG+QS RF SE DS+RRF   HGRRR+LRYGCV RRLSFRCAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLED+++
Subjt:  MATLQILKSTVSPLSISQTNFGAQSRRFSSEFDSSRRFVRFHGRRRNLRYGCVCRRLSFRCAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDSNS

Query:  TDFGLGG-LTRENRDFSGRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVVTISFFFALYFFFGPSFVHDG-KAPISPP
        TDFGLGG +  ENRDFS RSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLT+GGTFFLGFWPLIVVT+SFFFALYFF GPSFVHDG K PISPP
Subjt:  TDFGLGG-LTRENRDFSGRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVVTISFFFALYFFFGPSFVHDG-KAPISPP

Query:  PYVDPYALLEDERISQIAPRLN
        PYVDPYALLEDER+SQ+APR+N
Subjt:  PYVDPYALLEDERISQIAPRLN

XP_022984914.1 uncharacterized protein LOC111483048 [Cucurbita maxima]

9.1e-97

86.94

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Query:  MATLQILKSTVSPLSISQTNFGAQSRRFSSEFDSSRRFVRFHGRRRNLRYGCVCRRLSFRCAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDSNS
        MA LQILKSTVSP SISQ  FG+QS RF SE DS+RRFV  HGRRR+LRYGCV RRLSFRCAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLED+++
Subjt:  MATLQILKSTVSPLSISQTNFGAQSRRFSSEFDSSRRFVRFHGRRRNLRYGCVCRRLSFRCAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDSNS

Query:  TDFGLGG-LTRENRDFSGRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVVTISFFFALYFFFGPSFVHDG-KAPISPP
        TDFGLGG +  ENRDFS RSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLT+GGTFFLGFWPLIVVT+SFFFALYFF GPSFVHDG K PISPP
Subjt:  TDFGLGG-LTRENRDFSGRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVVTISFFFALYFFFGPSFVHDG-KAPISPP

Query:  PYVDPYALLEDERISQIAPRLN
        PYVDPYALLEDERISQ+APR+N
Subjt:  PYVDPYALLEDERISQIAPRLN

XP_023552655.1 uncharacterized protein LOC111810239 [Cucurbita pepo subsp. pepo]

4.5e-96

86.49

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Query:  MATLQILKSTVSPLSISQTNFGAQSRRFSSEFDSSRRFVRFHGRRRNLRYGCVCRRLSFRCAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDSNS
        MA LQILKSTVSP SISQ  FG+QS RF  E DS+RRFV  HGRRR+LRYGCV RRLSFRCAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLED+++
Subjt:  MATLQILKSTVSPLSISQTNFGAQSRRFSSEFDSSRRFVRFHGRRRNLRYGCVCRRLSFRCAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDSNS

Query:  TDFGLGG-LTRENRDFSGRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVVTISFFFALYFFFGPSFVHDG-KAPISPP
        TDFGLGG +  ENRDFS RSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLT+GGTFFLGFWPLIVVT+SFFFALYFF GPSFVHDG K PISPP
Subjt:  TDFGLGG-LTRENRDFSGRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVVTISFFFALYFFFGPSFVHDG-KAPISPP

Query:  PYVDPYALLEDERISQIAPRLN
        PYVDPYALLEDERISQ+APR+N
Subjt:  PYVDPYALLEDERISQIAPRLN

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BY38 uncharacterized protein LOC103494832

3.3e-92

81.9

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Query:  MATLQILKSTVSPLSISQTNFGAQSRRFSSEFDSSRRFVRFHGRRRNLRYGCVCRRLSFRCAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDSNS
        MA+LQILKST+S  SIS  NFG+QS RF S+FDS    +  HGRRR+LR  CVCRR SFRCAA+D+DKESNGEEPPESLFMKELKKRGITPTSLLED+N+
Subjt:  MATLQILKSTVSPLSISQTNFGAQSRRFSSEFDSSRRFVRFHGRRRNLRYGCVCRRLSFRCAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDSNS

Query:  TDFGLGG-LTRENRDFSGRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVVTISFFFALYFFFGPSFVHDGKAPISPPP
        +DFGLGG +T ENRDFS RSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLT+GGTFFLGFWPLI++T+SFFF LYFFFG SF+HDGK PISPPP
Subjt:  TDFGLGG-LTRENRDFSGRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVVTISFFFALYFFFGPSFVHDGKAPISPPP

Query:  YVDPYALLEDERISQIAPRLN
        YVDPYALLEDERISQIAP +N
Subjt:  YVDPYALLEDERISQIAPRLN

A0A6J1D5D9 uncharacterized protein LOC111017763

3.0e-101

87.33

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Query:  MATLQILKSTVSPLSISQTNFGAQSRRFSSEFDSSRRFVRFHGRRRNLRYGCVCRRLSFRCAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDSNS
        MA LQ+LKS VSPLSISQ NFG +S RF S+ DS+RRFVRFHGRRR+LRYGCVCRRLSFRCAAQD+DKESNGEEPPESLFMKELKKRG+TPTSLLEDSNS
Subjt:  MATLQILKSTVSPLSISQTNFGAQSRRFSSEFDSSRRFVRFHGRRRNLRYGCVCRRLSFRCAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDSNS

Query:  TDFGLGG-LTRENRDFSGRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVVTISFFFALYFFFGPSFVHDGKAPISPPP
         DFGLGG +T E RDFS RSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLT+GGTFFLGFWPLIV+T+SFFFALYFFFGPSFVH+G+ PISPPP
Subjt:  TDFGLGG-LTRENRDFSGRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVVTISFFFALYFFFGPSFVHDGKAPISPPP

Query:  YVDPYALLEDERISQIAPRLN
        YVDPYALLEDERISQ APR+N
Subjt:  YVDPYALLEDERISQIAPRLN

A0A6J1E457 uncharacterized protein LOC111430640

2.9e-96

86.04

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Query:  MATLQILKSTVSPLSISQTNFGAQSRRFSSEFDSSRRFVRFHGRRRNLRYGCVCRRLSFRCAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDSNS
        MA LQILKSTVSP SISQ  FG+QS RF SE DS+RRF   HGRRR+LRYGCV RRLSFRCAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLED+++
Subjt:  MATLQILKSTVSPLSISQTNFGAQSRRFSSEFDSSRRFVRFHGRRRNLRYGCVCRRLSFRCAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDSNS

Query:  TDFGLGG-LTRENRDFSGRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVVTISFFFALYFFFGPSFVHDG-KAPISPP
        TDFGLGG +  ENRDFS RSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLT+GGTFFLGFWPLIVVT+SFFFALYFF GPSFVHDG K PISPP
Subjt:  TDFGLGG-LTRENRDFSGRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVVTISFFFALYFFFGPSFVHDG-KAPISPP

Query:  PYVDPYALLEDERISQIAPRLN
        PYVDPYALLEDER+SQ+APR+N
Subjt:  PYVDPYALLEDERISQIAPRLN

A0A6J1JBV1 uncharacterized protein LOC111483048

4.4e-97

86.94

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Query:  MATLQILKSTVSPLSISQTNFGAQSRRFSSEFDSSRRFVRFHGRRRNLRYGCVCRRLSFRCAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDSNS
        MA LQILKSTVSP SISQ  FG+QS RF SE DS+RRFV  HGRRR+LRYGCV RRLSFRCAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLED+++
Subjt:  MATLQILKSTVSPLSISQTNFGAQSRRFSSEFDSSRRFVRFHGRRRNLRYGCVCRRLSFRCAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDSNS

Query:  TDFGLGG-LTRENRDFSGRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVVTISFFFALYFFFGPSFVHDG-KAPISPP
        TDFGLGG +  ENRDFS RSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLT+GGTFFLGFWPLIVVT+SFFFALYFF GPSFVHDG K PISPP
Subjt:  TDFGLGG-LTRENRDFSGRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVVTISFFFALYFFFGPSFVHDG-KAPISPP

Query:  PYVDPYALLEDERISQIAPRLN
        PYVDPYALLEDERISQ+APR+N
Subjt:  PYVDPYALLEDERISQIAPRLN

A0A6J1JUF8 uncharacterized protein LOC111488465 isoform X1

3.9e-93

84.68

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Query:  MATLQILKSTVSPLSISQTNFGAQSRRFSSEFDSSRRFVRFHGRRRNLRYGCVCRRLSFRCAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDSNS
        MA LQILKSTVS LS SQT+FG QS RF +E DSSRR VRFHGRRR+LRYGCVCRRLSFRCAAQDS KESNGEEPPESLFMKELKKRGITPTSLLED+ S
Subjt:  MATLQILKSTVSPLSISQTNFGAQSRRFSSEFDSSRRFVRFHGRRRNLRYGCVCRRLSFRCAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDSNS

Query:  TDFGLGG-LTRENRDFSGRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVVTISFFFALYFFFGPSFVHDG-KAPISPP
        T+F LGG  T EN DFSG SAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIV+T++FFFA YFFFG SFVHDG + P SPP
Subjt:  TDFGLGG-LTRENRDFSGRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVVTISFFFALYFFFGPSFVHDG-KAPISPP

Query:  PYVDPYALLEDERISQIAPRLN
        PYV PYA LEDERISQIAPR+N
Subjt:  PYVDPYALLEDERISQIAPRLN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G50020.1 unknown protein

1.7e-48

63.12

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Query:  AAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDSNSTDFGLGGLTRENRDFSGRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTLGGTF
        A    D +S GEEPPESLFMKELK+RG+TPTSLL+D    D       +E  + S  +A +   +KSL NQRERS+ LNSEGLEGLIPRA++LLT+GGTF
Subjt:  AAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDSNSTDFGLGGLTRENRDFSGRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTLGGTF

Query:  FLGFWPLIVVTISFFFALYFFFGPSFVHDG-KAPISPPPYVDPYALLEDERISQIAPRLN
        FLGFWPLIV+T+  F ALY +FG  F+HDG + P+SPPPY+DPYALLEDERIS + PRLN
Subjt:  FLGFWPLIVVTISFFFALYFFFGPSFVHDG-KAPISPPPYVDPYALLEDERISQIAPRLN

Sequences

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CDS sequence

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ATGGCTACTCTGCAAATCCTCAAATCAACCGTCTCTCCTCTTTCGATCTCTCAGACGAACTTTGGCGCTCAATCGAGGCGATTCTCGTCGGAGTTTGATTCTTCTCGGAG
GTTTGTGCGGTTCCATGGCCGGCGGAGGAATTTGCGATATGGCTGCGTTTGTCGGAGGTTGAGTTTCCGTTGCGCTGCTCAGGATTCTGATAAGGAAAGTAATGGAGAAG
AACCTCCAGAATCATTATTCATGAAGGAACTGAAGAAGAGAGGTATAACTCCCACTTCCTTGCTTGAGGATAGTAACAGCACCGACTTCGGACTCGGTGGGCTGACGCGA
GAAAACAGAGATTTCTCCGGTAGAAGTGCTGTATCAACTGAAGTAAACAAGAGCCTATCCAATCAAAGGGAGCGTTCCATGCAATTGAACAGTGAAGGCCTTGAGGGGTT
GATCCCTCGTGCTAAACTTTTGCTAACACTTGGAGGAACATTCTTCTTAGGATTCTGGCCGTTGATCGTCGTCACCATTTCCTTCTTTTTTGCTTTATACTTCTTTTTTG
GACCATCTTTTGTTCACGATGGCAAAGCGCCAATATCTCCTCCACCGTATGTTGATCCATATGCTCTTTTAGAGGACGAAAGAATTTCGCAAATAGCTCCTCGTCTGAAT
TGA

mRNA sequence

Show/hide mRNA sequence

CACACTTCGCTAAAATACGCCTGGGCGGAATACGTATTACGTATACGCTTTGATCGCTAAATTACGTTTCAATTTCAATTTCGTTTTGTTTTTTTTTTGAAAAAAATAAA
AATGAAATTATTTCTTTTTCTCCCATTGAATTCACTGGGAAGAACAAAGCTCTAGCTCTTCACCTATGGCTACTCTGCAAATCCTCAAATCAACCGTCTCTCCTCTTTCG
ATCTCTCAGACGAACTTTGGCGCTCAATCGAGGCGATTCTCGTCGGAGTTTGATTCTTCTCGGAGGTTTGTGCGGTTCCATGGCCGGCGGAGGAATTTGCGATATGGCTG
CGTTTGTCGGAGGTTGAGTTTCCGTTGCGCTGCTCAGGATTCTGATAAGGAAAGTAATGGAGAAGAACCTCCAGAATCATTATTCATGAAGGAACTGAAGAAGAGAGGTA
TAACTCCCACTTCCTTGCTTGAGGATAGTAACAGCACCGACTTCGGACTCGGTGGGCTGACGCGAGAAAACAGAGATTTCTCCGGTAGAAGTGCTGTATCAACTGAAGTA
AACAAGAGCCTATCCAATCAAAGGGAGCGTTCCATGCAATTGAACAGTGAAGGCCTTGAGGGGTTGATCCCTCGTGCTAAACTTTTGCTAACACTTGGAGGAACATTCTT
CTTAGGATTCTGGCCGTTGATCGTCGTCACCATTTCCTTCTTTTTTGCTTTATACTTCTTTTTTGGACCATCTTTTGTTCACGATGGCAAAGCGCCAATATCTCCTCCAC
CGTATGTTGATCCATATGCTCTTTTAGAGGACGAAAGAATTTCGCAAATAGCTCCTCGTCTGAATTGACTACCAACCATATAATAATCCTAATTGGTTGGTTTTCTGCTA
CTTTGTTTTCCCTTTCAAAATATTGGTTCATGTCCTTAAAATATTAAATATATTTATGTAAATGGTTATTAGCTAGAAA

Protein sequence

Show/hide protein sequence

MATLQILKSTVSPLSISQTNFGAQSRRFSSEFDSSRRFVRFHGRRRNLRYGCVCRRLSFRCAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDSNSTDFGLGGLTR
ENRDFSGRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVVTISFFFALYFFFGPSFVHDGKAPISPPPYVDPYALLEDERISQIAPRLN

Sed0009957 (gene) of Chayote v1 genome