CuGenDBv2

Gene ID	Sed0009960
Organism	Sechium edule (Chayote v1)
Description	CCHC-type domain-containing protein
Genome location	LG07:7321178..7322624
RNA-Seq Expression	Sed0009960
Synteny	Sed0009960
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR025558 - Domain of unknown function DUF4283 IPR025836 - Zinc knuckle CX2CX4HX4C IPR040256 - Uncharacterized protein At4g02000-like

Homology

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GenBank top hits

e value

%identity

Alignment

TXG48193.1 hypothetical protein EZV62_027487 [Acer yangbiense]

4.3e-35

33.78

Show/hide

Query:  MEVFQFEQMMANLEIGEQEAQGVFDLEDNDISAYEKELEGVMACRIHSEKQVSPDVFKKLIPKIWNAEQKVLLEYVGANTFICTFSNKIIKERVLDASPW
        M   +  Q+  NL + +++A  V ++ ++ I   +++++  +  ++ + K+V+ + FK LI +IWN   +V +E VG NTF+  F+NK  + +V +  PW
Subjt:  MEVFQFEQMMANLEIGEQEAQGVFDLEDNDISAYEKELEGVMACRIHSEKQVSPDVFKKLIPKIWNAEQKVLLEYVGANTFICTFSNKIIKERVLDASPW

Query:  IFDEAVLLFELLTGDRRVSELEFGYADFWVRLHDVPPACHTENNAKGLGNMVGVFITWDSEGDHRNRGKFLRVKVSIDIRRPLRRALKLKSGAMTNEKWV
        +F +++++ E   G   +++L+F  ADFWV++HD+P  C  +   K L   +G  +   +E      GK++RVKV +DI +PL+R L++K G       V
Subjt:  IFDEAVLLFELLTGDRRVSELEFGYADFWVRLHDVPPACHTENNAKGLGNMVGVFITWDSEGDHRNRGKFLRVKVSIDIRRPLRRALKLKSGAMTNEKWV

Query:  RISYEKLPIFCRGCGRVGHSTNECV
         + YE+LP FC  CGR+GHS  EC+
Subjt:  RISYEKLPIFCRGCGRVGHSTNECV

TXG53376.1 hypothetical protein EZV62_022545 [Acer yangbiense]

1.8e-33

36.89

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Query:  MEVFQFEQMMANLEIGEQEAQGVFDLEDNDISAYEKELEGVMACRIHSEKQVSPDVFKKLIPKIWNAEQKVLLEYVGANTFICTFSNKIIKERVLDASPW
        M   +  ++  NL + E++   +   E+  I    K++   +  ++ S K+V+ + FK LI +IW+   +V +E VG N F+  F+N   + RVL   PW
Subjt:  MEVFQFEQMMANLEIGEQEAQGVFDLEDNDISAYEKELEGVMACRIHSEKQVSPDVFKKLIPKIWNAEQKVLLEYVGANTFICTFSNKIIKERVLDASPW

Query:  IFDEAVLLFELLTGDRRVSELEFGYADFWVRLHDVPPACHTENNAKGLGNMVGVFITWDSEGDHRNRGKFLRVKVSIDIRRPLRRALKLKSGAMTNEKWV
         F  ++++ E  TG+  VS+L F  ADFWV++HD+P  C     AK L   +G  +   SE      GKF+ VKV IDI +PL+R LKLK G       V
Subjt:  IFDEAVLLFELLTGDRRVSELEFGYADFWVRLHDVPPACHTENNAKGLGNMVGVFITWDSEGDHRNRGKFLRVKVSIDIRRPLRRALKLKSGAMTNEKWV

Query:  RISYEKLPIFCRGCGRVGHSTNECV
         + YEKLP FC  CGR+G+   EC+
Subjt:  RISYEKLPIFCRGCGRVGHSTNECV

TXG57113.1 hypothetical protein EZV62_018426 [Acer yangbiense]

1.2e-32

33.86

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Query:  MEVFQFEQMMANLEIGEQEAQGVFDLEDNDISAYEKELEGVMACRIHSEKQVSPDVFKKLIPKIWNAEQKVLLEYVGANTFICTFSNKIIKERVLDASPW
        M   +  ++  +L I E++   +   E+  +   E +++  +  ++ S K+V+ + FK LI +IWN   +V +E VG N F+  F N   + RV +  PW
Subjt:  MEVFQFEQMMANLEIGEQEAQGVFDLEDNDISAYEKELEGVMACRIHSEKQVSPDVFKKLIPKIWNAEQKVLLEYVGANTFICTFSNKIIKERVLDASPW

Query:  IFDEAVLLFELLTGDRRVSELEFGYADFWVRLHDVPPACHTENNAKGLGNMVGVFITWDSEGDHRNRGKFLRVKVSIDIRRPLRRALKLKSGAMTNEKWV
         F  ++++ E   G   +S+L F  ADFWV++HD+P  C     AK L   +G  +    E      GKF+RVKV IDI +PL+R L+LK G       V
Subjt:  IFDEAVLLFELLTGDRRVSELEFGYADFWVRLHDVPPACHTENNAKGLGNMVGVFITWDSEGDHRNRGKFLRVKVSIDIRRPLRRALKLKSGAMTNEKWV

Query:  RISYEKLPIFCRGCGRVGHSTNECV------YVIIGEGNLLPFCEELREPTKER
         + YE+LP FC  CG++GH   EC       Y +  EG+   F   L+ P  ER
Subjt:  RISYEKLPIFCRGCGRVGHSTNECV------YVIIGEGNLLPFCEELREPTKER

TXG57799.1 hypothetical protein EZV62_015628 [Acer yangbiense]

3.4e-32

35.11

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Query:  MEVFQFEQMMANLEIGEQEAQGVFDLEDNDISAYEKELEGVMACRIHSEKQVSPDVFKKLIPKIWNAEQKVLLEYVGANTFICTFSNKIIKERVLDASPW
        M   +  Q+   L I +++ + V ++ + DI    ++++  +  R+ S K+V+ D FK LI +IW+   +V +E VG NTF+  F NK  + RV    PW
Subjt:  MEVFQFEQMMANLEIGEQEAQGVFDLEDNDISAYEKELEGVMACRIHSEKQVSPDVFKKLIPKIWNAEQKVLLEYVGANTFICTFSNKIIKERVLDASPW

Query:  IFDEAVLLFELLTGDRRVSELEFGYADFWVRLHDVPPACHTENNAKGLGNMVGVFITWDSEGDHRNRGKFLRVKVSIDIRRPLRRALKLKSGAMTNEKWV
         F  ++++ E   G   +S+L F  AD WV++HD+P  C      + L   +G  +   SE      GK++RVKV IDI +PL++ LKLK G       V
Subjt:  IFDEAVLLFELLTGDRRVSELEFGYADFWVRLHDVPPACHTENNAKGLGNMVGVFITWDSEGDHRNRGKFLRVKVSIDIRRPLRRALKLKSGAMTNEKWV

Query:  RISYEKLPIFCRGCGRVGHSTNECV
         + YE+L  FC  CGR+GH   EC+
Subjt:  RISYEKLPIFCRGCGRVGHSTNECV

TXG69259.1 hypothetical protein EZV62_004194 [Acer yangbiense]

5.3e-33

34.13

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Query:  MEVFQFEQMMANLEIGEQEAQGVFDLEDNDISAYEKELEGVMACRIHSEKQVSPDVFKKLIPKIWNAEQKVLLEYVGANTFICTFSNKIIKERVLDASPW
        M   +  ++  NL I +++ + +  + ++      ++++  +  ++ S K+V+ + F  +I  +WN   KV +E VG N F+  F N   + RV    PW
Subjt:  MEVFQFEQMMANLEIGEQEAQGVFDLEDNDISAYEKELEGVMACRIHSEKQVSPDVFKKLIPKIWNAEQKVLLEYVGANTFICTFSNKIIKERVLDASPW

Query:  IFDEAVLLFELLTGDRRVSELEFGYADFWVRLHDVPPACHTENNAKGLGNMVGVFITWDSEGDHRNRGKFLRVKVSIDIRRPLRRALKLKSGAMTNEKWV
         FD+++++ E+  G   +++L F  ADFWV++HD+P  C    +AK L   +G  I   SE      GKFLRVKV IDI RPL+R L+L      N   V
Subjt:  IFDEAVLLFELLTGDRRVSELEFGYADFWVRLHDVPPACHTENNAKGLGNMVGVFITWDSEGDHRNRGKFLRVKVSIDIRRPLRRALKLKSGAMTNEKWV

Query:  RISYEKLPIFCRGCGRVGHSTNECVYVIIG----EGNLLPFCEELREPTKER
         + YE++P FC  CGRVGH  NEC  +       EGN   F   +R PT ++
Subjt:  RISYEKLPIFCRGCGRVGHSTNECVYVIIG----EGNLLPFCEELREPTKER

TrEMBL top hits

e value

%identity

Alignment

A0A5C7GU64 CCHC-type domain-containing protein

2.1e-35

33.78

Show/hide

Query:  MEVFQFEQMMANLEIGEQEAQGVFDLEDNDISAYEKELEGVMACRIHSEKQVSPDVFKKLIPKIWNAEQKVLLEYVGANTFICTFSNKIIKERVLDASPW
        M   +  Q+  NL + +++A  V ++ ++ I   +++++  +  ++ + K+V+ + FK LI +IWN   +V +E VG NTF+  F+NK  + +V +  PW
Subjt:  MEVFQFEQMMANLEIGEQEAQGVFDLEDNDISAYEKELEGVMACRIHSEKQVSPDVFKKLIPKIWNAEQKVLLEYVGANTFICTFSNKIIKERVLDASPW

Query:  IFDEAVLLFELLTGDRRVSELEFGYADFWVRLHDVPPACHTENNAKGLGNMVGVFITWDSEGDHRNRGKFLRVKVSIDIRRPLRRALKLKSGAMTNEKWV
        +F +++++ E   G   +++L+F  ADFWV++HD+P  C  +   K L   +G  +   +E      GK++RVKV +DI +PL+R L++K G       V
Subjt:  IFDEAVLLFELLTGDRRVSELEFGYADFWVRLHDVPPACHTENNAKGLGNMVGVFITWDSEGDHRNRGKFLRVKVSIDIRRPLRRALKLKSGAMTNEKWV

Query:  RISYEKLPIFCRGCGRVGHSTNECV
         + YE+LP FC  CGR+GHS  EC+
Subjt:  RISYEKLPIFCRGCGRVGHSTNECV

A0A5C7HB59 Uncharacterized protein

8.8e-34

36.89

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Query:  MEVFQFEQMMANLEIGEQEAQGVFDLEDNDISAYEKELEGVMACRIHSEKQVSPDVFKKLIPKIWNAEQKVLLEYVGANTFICTFSNKIIKERVLDASPW
        M   +  ++  NL + E++   +   E+  I    K++   +  ++ S K+V+ + FK LI +IW+   +V +E VG N F+  F+N   + RVL   PW
Subjt:  MEVFQFEQMMANLEIGEQEAQGVFDLEDNDISAYEKELEGVMACRIHSEKQVSPDVFKKLIPKIWNAEQKVLLEYVGANTFICTFSNKIIKERVLDASPW

Query:  IFDEAVLLFELLTGDRRVSELEFGYADFWVRLHDVPPACHTENNAKGLGNMVGVFITWDSEGDHRNRGKFLRVKVSIDIRRPLRRALKLKSGAMTNEKWV
         F  ++++ E  TG+  VS+L F  ADFWV++HD+P  C     AK L   +G  +   SE      GKF+ VKV IDI +PL+R LKLK G       V
Subjt:  IFDEAVLLFELLTGDRRVSELEFGYADFWVRLHDVPPACHTENNAKGLGNMVGVFITWDSEGDHRNRGKFLRVKVSIDIRRPLRRALKLKSGAMTNEKWV

Query:  RISYEKLPIFCRGCGRVGHSTNECV
         + YEKLP FC  CGR+G+   EC+
Subjt:  RISYEKLPIFCRGCGRVGHSTNECV

A0A5C7HJ97 CCHC-type domain-containing protein

5.7e-33

33.86

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Query:  MEVFQFEQMMANLEIGEQEAQGVFDLEDNDISAYEKELEGVMACRIHSEKQVSPDVFKKLIPKIWNAEQKVLLEYVGANTFICTFSNKIIKERVLDASPW
        M   +  ++  +L I E++   +   E+  +   E +++  +  ++ S K+V+ + FK LI +IWN   +V +E VG N F+  F N   + RV +  PW
Subjt:  MEVFQFEQMMANLEIGEQEAQGVFDLEDNDISAYEKELEGVMACRIHSEKQVSPDVFKKLIPKIWNAEQKVLLEYVGANTFICTFSNKIIKERVLDASPW

Query:  IFDEAVLLFELLTGDRRVSELEFGYADFWVRLHDVPPACHTENNAKGLGNMVGVFITWDSEGDHRNRGKFLRVKVSIDIRRPLRRALKLKSGAMTNEKWV
         F  ++++ E   G   +S+L F  ADFWV++HD+P  C     AK L   +G  +    E      GKF+RVKV IDI +PL+R L+LK G       V
Subjt:  IFDEAVLLFELLTGDRRVSELEFGYADFWVRLHDVPPACHTENNAKGLGNMVGVFITWDSEGDHRNRGKFLRVKVSIDIRRPLRRALKLKSGAMTNEKWV

Query:  RISYEKLPIFCRGCGRVGHSTNECV------YVIIGEGNLLPFCEELREPTKER
         + YE+LP FC  CG++GH   EC       Y +  EG+   F   L+ P  ER
Subjt:  RISYEKLPIFCRGCGRVGHSTNECV------YVIIGEGNLLPFCEELREPTKER

A0A5C7HLY4 CCHC-type domain-containing protein

1.7e-32

35.11

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Query:  MEVFQFEQMMANLEIGEQEAQGVFDLEDNDISAYEKELEGVMACRIHSEKQVSPDVFKKLIPKIWNAEQKVLLEYVGANTFICTFSNKIIKERVLDASPW
        M   +  Q+   L I +++ + V ++ + DI    ++++  +  R+ S K+V+ D FK LI +IW+   +V +E VG NTF+  F NK  + RV    PW
Subjt:  MEVFQFEQMMANLEIGEQEAQGVFDLEDNDISAYEKELEGVMACRIHSEKQVSPDVFKKLIPKIWNAEQKVLLEYVGANTFICTFSNKIIKERVLDASPW

Query:  IFDEAVLLFELLTGDRRVSELEFGYADFWVRLHDVPPACHTENNAKGLGNMVGVFITWDSEGDHRNRGKFLRVKVSIDIRRPLRRALKLKSGAMTNEKWV
         F  ++++ E   G   +S+L F  AD WV++HD+P  C      + L   +G  +   SE      GK++RVKV IDI +PL++ LKLK G       V
Subjt:  IFDEAVLLFELLTGDRRVSELEFGYADFWVRLHDVPPACHTENNAKGLGNMVGVFITWDSEGDHRNRGKFLRVKVSIDIRRPLRRALKLKSGAMTNEKWV

Query:  RISYEKLPIFCRGCGRVGHSTNECV
         + YE+L  FC  CGR+GH   EC+
Subjt:  RISYEKLPIFCRGCGRVGHSTNECV

A0A5C7IJL3 CCHC-type domain-containing protein

2.6e-33

34.13

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Query:  MEVFQFEQMMANLEIGEQEAQGVFDLEDNDISAYEKELEGVMACRIHSEKQVSPDVFKKLIPKIWNAEQKVLLEYVGANTFICTFSNKIIKERVLDASPW
        M   +  ++  NL I +++ + +  + ++      ++++  +  ++ S K+V+ + F  +I  +WN   KV +E VG N F+  F N   + RV    PW
Subjt:  MEVFQFEQMMANLEIGEQEAQGVFDLEDNDISAYEKELEGVMACRIHSEKQVSPDVFKKLIPKIWNAEQKVLLEYVGANTFICTFSNKIIKERVLDASPW

Query:  IFDEAVLLFELLTGDRRVSELEFGYADFWVRLHDVPPACHTENNAKGLGNMVGVFITWDSEGDHRNRGKFLRVKVSIDIRRPLRRALKLKSGAMTNEKWV
         FD+++++ E+  G   +++L F  ADFWV++HD+P  C    +AK L   +G  I   SE      GKFLRVKV IDI RPL+R L+L      N   V
Subjt:  IFDEAVLLFELLTGDRRVSELEFGYADFWVRLHDVPPACHTENNAKGLGNMVGVFITWDSEGDHRNRGKFLRVKVSIDIRRPLRRALKLKSGAMTNEKWV

Query:  RISYEKLPIFCRGCGRVGHSTNECVYVIIG----EGNLLPFCEELREPTKER
         + YE++P FC  CGRVGH  NEC  +       EGN   F   +R PT ++
Subjt:  RISYEKLPIFCRGCGRVGHSTNECVYVIIG----EGNLLPFCEELREPTKER

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGAAGTTTTCCAATTCGAGCAGATGATGGCAAATTTGGAGATTGGGGAACAAGAAGCACAAGGAGTGTTTGATCTTGAAGACAATGACATTTCCGCTTATGAGAAAGA
ACTTGAAGGAGTAATGGCTTGTAGAATCCACTCGGAAAAACAGGTCAGCCCTGATGTTTTCAAAAAGCTTATCCCAAAAATTTGGAATGCTGAACAAAAAGTATTACTCG
AATATGTGGGAGCCAATACTTTCATTTGTACCTTTTCAAATAAAATAATTAAAGAGAGGGTTCTCGATGCAAGTCCATGGATATTTGATGAGGCTGTTTTACTGTTTGAG
CTTTTGACTGGAGATAGGCGGGTTTCTGAGCTTGAATTCGGCTATGCTGATTTCTGGGTTCGTCTTCATGATGTTCCGCCGGCATGCCATACCGAGAACAATGCGAAAGG
GTTGGGAAATATGGTTGGGGTTTTCATCACTTGGGACAGTGAGGGAGATCATAGGAATAGAGGCAAATTTTTAAGGGTGAAAGTTTCAATAGATATTAGGCGTCCGTTGA
GAAGAGCGTTAAAGCTTAAGAGCGGTGCGATGACTAATGAAAAGTGGGTTCGTATCTCTTATGAAAAATTGCCAATATTTTGTCGTGGGTGCGGAAGAGTGGGGCATTCG
ACCAACGAGTGTGTGTATGTGATTATCGGAGAAGGAAATCTTCTCCCGTTTTGTGAAGAGTTGAGAGAGCCAACAAAGGAGAGAGACAACCAGTTCAAAGGAATATGGGA
AGAGGAAGAGCCAGGGGGAAGAGGAAGAAGGGGTGATTATAGAGGTTTTGAGGAGAGAGCTGCAGAAGAGGTCGAAGTTGGATTTCGAGAAGAAATTGTGATCGATGGGA
GGATTCCGGCTGCTTTTGATCGGAGGGTTGAAGCTAACGGGTCGCCGGAAAATTCTTTGGGAAACGGGCAGTTGCGACAAGACATTCTGAAAGGCCAGAATATTTTCACA
GGATTTGGGGAGATCTCTTGTACGGAAAAGGTTGAAGAAGAAACTGTTGCTAAGGCTTTAGCGACTGATTCAACAGAGATTGAGCAGGGAAGGTCTGAGCAGGGACATGT
GGCAGAAGATCAACGGCTCAGATCAATTGATAAAGGGAAAGGAAAAGTTATAGACAGTGCATTAAATGAGCTTTTATTTGGGTCTTTTGAAGTCAATTTTGAAGTATGCA
ATGATGGTATTAAAAAAAAGAAGGTTGGGCTTATTGATGGGCCAAATAAGGGGATTATTATTAAAGAAAAAGATAATTCAAATTTGGTTGAGACTAATCTCCAATGCTTA
AAGAATTTGTGTCCAGAGAAGCCTAGTATACAAAATGAGCATATTACTGTTGATGATGAAGGATATGAAAGAGATAAGTTAAGGGCCACAACAAAAAATTCTCGGGAAGG
AGATTAA

mRNA sequence

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Protein sequence

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MEVFQFEQMMANLEIGEQEAQGVFDLEDNDISAYEKELEGVMACRIHSEKQVSPDVFKKLIPKIWNAEQKVLLEYVGANTFICTFSNKIIKERVLDASPWIFDEAVLLFE
LLTGDRRVSELEFGYADFWVRLHDVPPACHTENNAKGLGNMVGVFITWDSEGDHRNRGKFLRVKVSIDIRRPLRRALKLKSGAMTNEKWVRISYEKLPIFCRGCGRVGHS
TNECVYVIIGEGNLLPFCEELREPTKERDNQFKGIWEEEEPGGRGRRGDYRGFEERAAEEVEVGFREEIVIDGRIPAAFDRRVEANGSPENSLGNGQLRQDILKGQNIFT
GFGEISCTEKVEEETVAKALATDSTEIEQGRSEQGHVAEDQRLRSIDKGKGKVIDSALNELLFGSFEVNFEVCNDGIKKKKVGLIDGPNKGIIIKEKDNSNLVETNLQCL
KNLCPEKPSIQNEHITVDDEGYERDKLRATTKNSREGD

Sed0009960 (gene) of Chayote v1 genome