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Sed0009978 (gene) of Chayote v1 genome

Gene IDSed0009978
OrganismSechium edule (Chayote v1)
Descriptionembryo sac development arrest 6
Genome locationLG07:1439397..1440092
RNA-Seq ExpressionSed0009978
SyntenySed0009978
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039884.1 uncharacterized protein E6C27_scaffold122G001610 [Cucumis melo var. makuwa]2.4e-3153.05Show/hide
Query:  NTTKSLRLPPRRLITSSGPSS------RPNKRGLDE---------AHQVSFTAKLAKPAPTGSNRLLAGYLAHEFLTNGTLFGRPWDHQPAEGSGSA-AQ
        NTTK++RLPPRRL+TS  P++      R  + GLD+         AHQ+SFTAK+  P P  S +LLAGYLAHEFLT GTLFG+ WD+ P   + +A A 
Subjt:  NTTKSLRLPPRRLITSSGPSS------RPNKRGLDE---------AHQVSFTAKLAKPAPTGSNRLLAGYLAHEFLTNGTLFGRPWDHQPAEGSGSA-AQ

Query:  PT---------------EKREAEPEL-HRKNYQSYVEVSNLFKHRGAHFEGIVNPTQLASLLNL
        P+               EKR+A+ EL H KNYQSYVEV+NL KH G+H +GIVNPTQLA LLNL
Subjt:  PT---------------EKREAEPEL-HRKNYQSYVEVSNLFKHRGAHFEGIVNPTQLASLLNL

KAG6576089.1 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]3.5e-3564.84Show/hide
Query:  MNTTKSLRLPPRRLITSSGPSSRPNKR----GL-DEAHQVSFTAKLAKPAPTGSNRLLAGYLAHEFLTNGTLFGRPWDHQPAEGSGSAAQPTEKREAEPE
        MNTTK++RLPPRRL+TS GPSSRPNKR    G  DEAHQ+SFTAK++KP P  SN LLAGYLAHEF T GTLFG+ WDH     + S     EKR+A  E
Subjt:  MNTTKSLRLPPRRLITSSGPSSRPNKR----GL-DEAHQVSFTAKLAKPAPTGSNRLLAGYLAHEFLTNGTLFGRPWDHQPAEGSGSAAQPTEKREAEPE

Query:  LHRKNYQSYVEVSNLFKHRGAHFEGIVN
        LH KNYQSYVEV+NL KH GAHF+  ++
Subjt:  LHRKNYQSYVEVSNLFKHRGAHFEGIVN

KAG7014604.1 hypothetical protein SDJN02_24783, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-3868.18Show/hide
Query:  LRLPPRRLITSSGPSSRPNKR----GL-DEAHQVSFTAKLAKPAPTGSNRLLAGYLAHEFLTNGTLFGRPWDHQPAEGSGSAAQPTEKREAEPELHRKNY
        +RLPPRRL+TS GPSSRPNKR    G  DEAHQ+SFTAK++KP P  SN LLAGYLAHEF T GTLFG+ WDH     + S     EKR+A  ELH KNY
Subjt:  LRLPPRRLITSSGPSSRPNKR----GL-DEAHQVSFTAKLAKPAPTGSNRLLAGYLAHEFLTNGTLFGRPWDHQPAEGSGSAAQPTEKREAEPELHRKNY

Query:  QSYVEVSNLFKHRGAHFEGIVNPTQLASLLNL
        QSYVEV+NL KH GAHF+GIVNPTQLA  LNL
Subjt:  QSYVEVSNLFKHRGAHFEGIVNPTQLASLLNL

XP_011656778.1 uncharacterized protein LOC105435768 [Cucumis sativus]4.7e-3254.32Show/hide
Query:  NTTKSLRLPPRRLITSSGPSS-RPNKRGL------DEAHQVSFTAKLAKPAPT-GSNRLLAGYLAHEFLTNGTLFGRPWDH-QPAEGSGSAA--------
        NTTK++RLPPRRL+TS  P++ R  + GL      DEAHQ+  TAK+ KP PT  S +LLAGYLAHEFLT GTLFG+ WD+  PA  + + A        
Subjt:  NTTKSLRLPPRRLITSSGPSS-RPNKRGL------DEAHQVSFTAKLAKPAPT-GSNRLLAGYLAHEFLTNGTLFGRPWDH-QPAEGSGSAA--------

Query:  -----------QPTEKREAEPELH--RKNYQSYVEVSNLFKHRGAHFEGIVNPTQLASLLNL
                   +P EKR+AE +LH  +KNYQSYVEV+NL KH G H EGIVNPTQLA  LNL
Subjt:  -----------QPTEKREAEPELH--RKNYQSYVEVSNLFKHRGAHFEGIVNPTQLASLLNL

XP_038906548.1 uncharacterized protein LOC120092519 [Benincasa hispida]1.1e-3664.83Show/hide
Query:  MNTTKSLRLPPRRLITSSGPSSRPNKR----GL--DEAHQVSFTAKLAK----PAPTGSNRLLAGYLAHEFLTNGTLFGRPWDH-QPAEGSGSAAQPTEK
        MNTTK++RLPPRRL+TS  P  RP KR    GL  DEAHQ+S TAK+ K    P P+ SN LLAGYLAHEFLT GTLFG+ WD   PA  S SA+ P E 
Subjt:  MNTTKSLRLPPRRLITSSGPSSRPNKR----GL--DEAHQVSFTAKLAK----PAPTGSNRLLAGYLAHEFLTNGTLFGRPWDH-QPAEGSGSAAQPTEK

Query:  REA-EPELHRKNYQSYVEVSNLFKHRGAHFEGIVNPTQLASLLNL
         E  + ELH KNYQSYVEV+NL KH G HF+GIVNPTQLA LLNL
Subjt:  REA-EPELHRKNYQSYVEVSNLFKHRGAHFEGIVNPTQLASLLNL

TrEMBL top hitse value%identityAlignment
A0A0A0KDC0 Uncharacterized protein2.3e-3254.32Show/hide
Query:  NTTKSLRLPPRRLITSSGPSS-RPNKRGL------DEAHQVSFTAKLAKPAPT-GSNRLLAGYLAHEFLTNGTLFGRPWDH-QPAEGSGSAA--------
        NTTK++RLPPRRL+TS  P++ R  + GL      DEAHQ+  TAK+ KP PT  S +LLAGYLAHEFLT GTLFG+ WD+  PA  + + A        
Subjt:  NTTKSLRLPPRRLITSSGPSS-RPNKRGL------DEAHQVSFTAKLAKPAPT-GSNRLLAGYLAHEFLTNGTLFGRPWDH-QPAEGSGSAA--------

Query:  -----------QPTEKREAEPELH--RKNYQSYVEVSNLFKHRGAHFEGIVNPTQLASLLNL
                   +P EKR+AE +LH  +KNYQSYVEV+NL KH G H EGIVNPTQLA  LNL
Subjt:  -----------QPTEKREAEPELH--RKNYQSYVEVSNLFKHRGAHFEGIVNPTQLASLLNL

A0A1S3CBD7 uncharacterized protein LOC1034989151.5e-3152.73Show/hide
Query:  NTTKSLRLPPRRLITSSGPSS------RPNKRGLDE---------AHQVSFTAKLAKPAPTGSNRLLAGYLAHEFLTNGTLFGRPWDHQPAEGSGSA-AQ
        NTTK++RLPPRRL+TS  P++      R  + GLD+         AHQ+SFTAK+  P P  S +LLAGYLAHEFLT GTLFG+ WD+ P   + +A A 
Subjt:  NTTKSLRLPPRRLITSSGPSS------RPNKRGLDE---------AHQVSFTAKLAKPAPTGSNRLLAGYLAHEFLTNGTLFGRPWDHQPAEGSGSA-AQ

Query:  PT----------------EKREAEPEL-HRKNYQSYVEVSNLFKHRGAHFEGIVNPTQLASLLNL
        P+                EKR+A+ EL H KNYQSYVEV+NL KH G+H +GIVNPTQLA LLNL
Subjt:  PT----------------EKREAEPEL-HRKNYQSYVEVSNLFKHRGAHFEGIVNPTQLASLLNL

A0A2C9UPY2 Uncharacterized protein1.3e-2246.21Show/hide
Query:  TKSLRLPPRRLITSSGPSSRPNKRGLDEAHQVSFTAKLAKPA-----------PTGSNRLLAGYLAHEFLTNGTLFGRPWDHQPAE---GSGSAAQPTEK
        TK++RLPPRR++TS   + R  +   D         KLAKP+           P  SN+LLAGYLAHE+LT GTLFG+PWD   AE   G     +P++K
Subjt:  TKSLRLPPRRLITSSGPSSRPNKRGLDEAHQVSFTAKLAKPA-----------PTGSNRLLAGYLAHEFLTNGTLFGRPWDHQPAE---GSGSAAQPTEK

Query:  -REAEPELHRKNYQSYVEVSNLFKHRGAHFEGIVNPTQLASLLNL
         +E E E +++NYQ YVEVS+L K  GAH  G+VNP+QL+  L +
Subjt:  -REAEPELHRKNYQSYVEVSNLFKHRGAHFEGIVNPTQLASLLNL

A0A5A7T8V2 Uncharacterized protein1.1e-3153.05Show/hide
Query:  NTTKSLRLPPRRLITSSGPSS------RPNKRGLDE---------AHQVSFTAKLAKPAPTGSNRLLAGYLAHEFLTNGTLFGRPWDHQPAEGSGSA-AQ
        NTTK++RLPPRRL+TS  P++      R  + GLD+         AHQ+SFTAK+  P P  S +LLAGYLAHEFLT GTLFG+ WD+ P   + +A A 
Subjt:  NTTKSLRLPPRRLITSSGPSS------RPNKRGLDE---------AHQVSFTAKLAKPAPTGSNRLLAGYLAHEFLTNGTLFGRPWDHQPAEGSGSA-AQ

Query:  PT---------------EKREAEPEL-HRKNYQSYVEVSNLFKHRGAHFEGIVNPTQLASLLNL
        P+               EKR+A+ EL H KNYQSYVEV+NL KH G+H +GIVNPTQLA LLNL
Subjt:  PT---------------EKREAEPEL-HRKNYQSYVEVSNLFKHRGAHFEGIVNPTQLASLLNL

A0A6P5SLS2 uncharacterized protein LOC1107574353.7e-2247.65Show/hide
Query:  TKSLRLPPRRLITSSGPSSRPNKR---GLDEAHQVSFTAKLAK------------PAPTGSNRLLAGYLAHEFLTNGTLFGRPWDHQPAEGSGSAAQPTE
        TK++RLPPRR+ T++  ++   K    G D  HQ + T K+ K            P P  S +LLAGYLAHEFLT GTL G+PWD   AE   + A P E
Subjt:  TKSLRLPPRRLITSSGPSSRPNKR---GLDEAHQVSFTAKLAK------------PAPTGSNRLLAGYLAHEFLTNGTLFGRPWDHQPAEGSGSAAQPTE

Query:  KREAEP----ELHRKNYQSYVEVSNLFKHRGAHFEGIVNPTQLASLLNL
          EAEP    E H +N + YVEV++L K  GAH  GIVNPTQLA +L L
Subjt:  KREAEP----ELHRKNYQSYVEVSNLFKHRGAHFEGIVNPTQLASLLNL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G04000.1 unknown protein2.7e-1737.75Show/hide
Query:  TKSLRLPPRRLITSSGPSSR--------------------PNKRGLDEAHQVSFTAKLAKPAPTGSNRL-LAGYLAHEFLTNGTLFGRPWDHQPAEGSGS
        TK++RLPPRR++T+     R                    P K      + +S  +  A   P GSN+L LAGYL+HE+LT GTLFG  W+   A+   S
Subjt:  TKSLRLPPRRLITSSGPSSR--------------------PNKRGLDEAHQVSFTAKLAKPAPTGSNRL-LAGYLAHEFLTNGTLFGRPWDHQPAEGSGS

Query:  AAQPTEKREAEPELHRKNYQSYVEVSNLFKHRGAHFEGIVNPTQLASLLNL
          +P+   E   E   K  + Y EV+NL +  GA   GIVNP QLA  L L
Subjt:  AAQPTEKREAEPELHRKNYQSYVEVSNLFKHRGAHFEGIVNPTQLASLLNL

AT3G23440.1 embryo sac development arrest 66.4e-1145.88Show/hide
Query:  NRLLAGYLAHEFLTNGTLFGRPWDHQPAE-GSGSAAQPTEKREAEPELHRKNYQSYVEVSNLFKHRGAHFEGIVNPTQLASLLNL
        N LLAGY+AHE+LT GT+ GR      AE G   +  P + RE      +K  QSY EV+++FK  G H  G+VNPTQLA  + +
Subjt:  NRLLAGYLAHEFLTNGTLFGRPWDHQPAE-GSGSAAQPTEKREAEPELHRKNYQSYVEVSNLFKHRGAHFEGIVNPTQLASLLNL

AT5G44060.1 unknown protein3.2e-1838.67Show/hide
Query:  TKSLRLPPRRLITSS-----------GPSSRPNKRGLDEAHQV---SFTAKLAKPAPTGSNRLLAGYLAHEFLTNGTLFGRPWDHQPAEGSGSAAQPTEK
        TK++RLPPRR+ + +            P   P K  + +   +   + TA +A   P  SN+LLAGYLAHEFL NGTLFG  W+   A+      Q  + 
Subjt:  TKSLRLPPRRLITSS-----------GPSSRPNKRGLDEAHQV---SFTAKLAKPAPTGSNRLLAGYLAHEFLTNGTLFGRPWDHQPAEGSGSAAQPTEK

Query:  R------EAEPELHRKNYQSYVEVSNLFKHRGAHFEGIVNPTQLASLLNL
        R      + EP  H++  + YVEV+N+ +  G H  GIVNP+QLA  L L
Subjt:  R------EAEPELHRKNYQSYVEVSNLFKHRGAHFEGIVNPTQLASLLNL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATACCACCAAATCGCTGCGTTTACCTCCTCGTAGATTAATCACGAGTTCTGGGCCCAGTTCTAGGCCCAATAAGAGGGGCCTCGACGAGGCCCACCAAGTGTCGTT
TACGGCTAAATTGGCCAAGCCAGCACCGACGGGTTCGAACCGGCTCCTAGCCGGCTATTTGGCTCACGAGTTTCTCACCAACGGGACACTTTTCGGGCGGCCTTGGGACC
ACCAGCCGGCTGAGGGTTCCGGTTCAGCCGCCCAGCCAACCGAGAAACGCGAAGCCGAGCCGGAGCTGCACCGGAAGAATTATCAGTCCTACGTGGAGGTGTCTAATTTG
TTCAAACATCGTGGGGCCCACTTTGAAGGAATTGTGAATCCCACCCAGCTAGCTAGCTTGCTAAACTTGTGA
mRNA sequenceShow/hide mRNA sequence
CATCCGTCTCTCCTTCTTTTCCAATCTTTTCTCAAATTTCTTTAAATATAATTTCTTTCATTCCCTTTTCTCAATTTCCTTTTTTTGCGGGGTTTTTTGTTTTTCCTATT
TTAGCCCCTTGTAAATTATTGCCTGTGGGGGGTTTATTTGTAAATTAGCAATTGTTCGAGGGTGTTTTGTTTAATATTTTTGGAGATAAAGCGTGCAAATTTTGAAGGAA
ATTATATTTTGGGAGGTGGTGCTGACGTGGCATGCATTGGTAGAGTAGGTTTAGGTTCGGAGGTGGGGCCCGAGATGAATACCACCAAATCGCTGCGTTTACCTCCTCGT
AGATTAATCACGAGTTCTGGGCCCAGTTCTAGGCCCAATAAGAGGGGCCTCGACGAGGCCCACCAAGTGTCGTTTACGGCTAAATTGGCCAAGCCAGCACCGACGGGTTC
GAACCGGCTCCTAGCCGGCTATTTGGCTCACGAGTTTCTCACCAACGGGACACTTTTCGGGCGGCCTTGGGACCACCAGCCGGCTGAGGGTTCCGGTTCAGCCGCCCAGC
CAACCGAGAAACGCGAAGCCGAGCCGGAGCTGCACCGGAAGAATTATCAGTCCTACGTGGAGGTGTCTAATTTGTTCAAACATCGTGGGGCCCACTTTGAAGGAATTGTG
AATCCCACCCAGCTAGCTAGCTTGCTAAACTTGTGA
Protein sequenceShow/hide protein sequence
MNTTKSLRLPPRRLITSSGPSSRPNKRGLDEAHQVSFTAKLAKPAPTGSNRLLAGYLAHEFLTNGTLFGRPWDHQPAEGSGSAAQPTEKREAEPELHRKNYQSYVEVSNL
FKHRGAHFEGIVNPTQLASLLNL