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Sed0009985 (gene) of Chayote v1 genome

Gene IDSed0009985
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG08:24766083..24773852
RNA-Seq ExpressionSed0009985
SyntenySed0009985
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025558 - Domain of unknown function DUF4283
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MCH84017.1 zinc CCHC-type-like protein [Trifolium medium]2.5e-1641.38Show/hide
Query:  MAGDKRVSEMEFGFGDFWVRLHNVPPACHTEINARKLGSMLGKFIGWDSEGDKRNRGKFLRLKISIDVRIPLRRALKLKSGSMAAEKWARLSYEKLPLFC
        ++G+++ SE+E     FWVR++++P    +E  A+KLG++LG F   D + D    GKFLR+++S+D+R PL+R  KL       + W    YE+LP FC
Subjt:  MAGDKRVSEMEFGFGDFWVRLHNVPPACHTEINARKLGSMLGKFIGWDSEGDKRNRGKFLRLKISIDVRIPLRRALKLKSGSMAAEKWARLSYEKLPLFC

Query:  RGCGRIGHKDSDCNFV
          CGRIGH+  DC  V
Subjt:  RGCGRIGHKDSDCNFV

MCH84359.1 zinc CCHC-type-like protein [Trifolium medium]3.2e-1642.24Show/hide
Query:  MAGDKRVSEMEFGFGDFWVRLHNVPPACHTEINARKLGSMLGKFIGWDSEGDKRNRGKFLRLKISIDVRIPLRRALKLKSGSMAAEKWARLSYEKLPLFC
        ++G+++ SE+E     FWVR++++P    +E  A+KLG+ LG F   D +   R  GKFLR++  +D+R PL+R  KLK      + W    YE+LP FC
Subjt:  MAGDKRVSEMEFGFGDFWVRLHNVPPACHTEINARKLGSMLGKFIGWDSEGDKRNRGKFLRLKISIDVRIPLRRALKLKSGSMAAEKWARLSYEKLPLFC

Query:  RGCGRIGHKDSDCNFV
         GCGRIGH+  DC  V
Subjt:  RGCGRIGHKDSDCNFV

PNX92709.1 cysteine desulfurase mitochondrial-like [Trifolium pratense]3.2e-1641.38Show/hide
Query:  MAGDKRVSEMEFGFGDFWVRLHNVPPACHTEINARKLGSMLGKFIGWDSEGDKRNRGKFLRLKISIDVRIPLRRALKLKSGSMAAEKWARLSYEKLPLFC
        ++G+++ SE+E     FWVR++++P    +E  A+KLG++LG F   D + D    GKFLR+++S+D+R PL+R  KL       + W    YE+LP FC
Subjt:  MAGDKRVSEMEFGFGDFWVRLHNVPPACHTEINARKLGSMLGKFIGWDSEGDKRNRGKFLRLKISIDVRIPLRRALKLKSGSMAAEKWARLSYEKLPLFC

Query:  RGCGRIGHKDSDCNFV
          CGRIGH+  DC  V
Subjt:  RGCGRIGHKDSDCNFV

TXG60912.1 hypothetical protein EZV62_012275 [Acer yangbiense]1.1e-1635.63Show/hide
Query:  GDKRVSEMEFGFGDFWVRLHNVPPACHTEINARKLGSMLGKFIGWDSEGDKRNRGKFLRLKISIDVRIPLRRALKLKSGSMAAEKWARLSYEKLPLFCRG
        G   V+ M+F   +FW+++HNVP  C TE   R LGS++G     D      N  KFLR+++ IDV IPLRR L++ +     E    L YE+LP FC  
Subjt:  GDKRVSEMEFGFGDFWVRLHNVPPACHTEINARKLGSMLGKFIGWDSEGDKRNRGKFLRLKISIDVRIPLRRALKLKSGSMAAEKWARLSYEKLPLFCRG

Query:  CGRIGHKDSDCNFVVIGE---GLPFPFREELRESSGFFRGEGGSPSRFARRGRGRGRGRGGGLRAEEEEFSVRG
        CG +GH   DC   + G+   G  F +   +R  + F R  G     + RR   RG G    +R +  +  +RG
Subjt:  CGRIGHKDSDCNFVVIGE---GLPFPFREELRESSGFFRGEGGSPSRFARRGRGRGRGRGGGLRAEEEEFSVRG

XP_039815364.1 uncharacterized protein LOC120678302 [Panicum virgatum]7.2e-1629.31Show/hide
Query:  KRVSEMEFGFGDFWVRLHNVPPACHTEINARKLGSMLGKFIGWDSEGDKRNRGKFLRLKISIDVRIPLRRALKLKSGSMAAEKWARLSYEKLPLFCRGCG
        K + E+EF     W+R+  +P     +  A ++G  LG+F+  D E D+   G+FLR+K+ I++  PLRR + +  G  A E+W  ++YE LP FC  CG
Subjt:  KRVSEMEFGFGDFWVRLHNVPPACHTEINARKLGSMLGKFIGWDSEGDKRNRGKFLRLKISIDVRIPLRRALKLKSGSMAAEKWARLSYEKLPLFCRGCG

Query:  RIGHKDSDCNFVVIGEGLPFPFREELR--ESSGFFRGEGGSPSRFARRGRGR-----------GRGRGGGLRAEEEEFSVRGVELGSNVGCRREDVQRSA
        RIGH D  C    +  G   PF  ELR       F GE        R G GR             GRG G R   +  S R  ++G     + ++ + ++
Subjt:  RIGHKDSDCNFVVIGEGLPFPFREELR--ESSGFFRGEGGSPSRFARRGRGR-----------GRGRGGGLRAEEEEFSVRGVELGSNVGCRREDVQRSA

Query:  SFSVERRRNCSANESPEIVLGDGERNMEESQK
           ++        +  +  L D    M + +K
Subjt:  SFSVERRRNCSANESPEIVLGDGERNMEESQK

TrEMBL top hitse value%identityAlignment
A0A2K3MPT1 Cysteine desulfurase mitochondrial-like1.6e-1641.38Show/hide
Query:  MAGDKRVSEMEFGFGDFWVRLHNVPPACHTEINARKLGSMLGKFIGWDSEGDKRNRGKFLRLKISIDVRIPLRRALKLKSGSMAAEKWARLSYEKLPLFC
        ++G+++ SE+E     FWVR++++P    +E  A+KLG++LG F   D + D    GKFLR+++S+D+R PL+R  KL       + W    YE+LP FC
Subjt:  MAGDKRVSEMEFGFGDFWVRLHNVPPACHTEINARKLGSMLGKFIGWDSEGDKRNRGKFLRLKISIDVRIPLRRALKLKSGSMAAEKWARLSYEKLPLFC

Query:  RGCGRIGHKDSDCNFV
          CGRIGH+  DC  V
Subjt:  RGCGRIGHKDSDCNFV

A0A392M948 Zinc CCHC-type-like protein (Fragment)1.2e-1641.38Show/hide
Query:  MAGDKRVSEMEFGFGDFWVRLHNVPPACHTEINARKLGSMLGKFIGWDSEGDKRNRGKFLRLKISIDVRIPLRRALKLKSGSMAAEKWARLSYEKLPLFC
        ++G+++ SE+E     FWVR++++P    +E  A+KLG++LG F   D + D    GKFLR+++S+D+R PL+R  KL       + W    YE+LP FC
Subjt:  MAGDKRVSEMEFGFGDFWVRLHNVPPACHTEINARKLGSMLGKFIGWDSEGDKRNRGKFLRLKISIDVRIPLRRALKLKSGSMAAEKWARLSYEKLPLFC

Query:  RGCGRIGHKDSDCNFV
          CGRIGH+  DC  V
Subjt:  RGCGRIGHKDSDCNFV

A0A392MB81 Zinc CCHC-type-like protein (Fragment)1.6e-1642.24Show/hide
Query:  MAGDKRVSEMEFGFGDFWVRLHNVPPACHTEINARKLGSMLGKFIGWDSEGDKRNRGKFLRLKISIDVRIPLRRALKLKSGSMAAEKWARLSYEKLPLFC
        ++G+++ SE+E     FWVR++++P    +E  A+KLG+ LG F   D +   R  GKFLR++  +D+R PL+R  KLK      + W    YE+LP FC
Subjt:  MAGDKRVSEMEFGFGDFWVRLHNVPPACHTEINARKLGSMLGKFIGWDSEGDKRNRGKFLRLKISIDVRIPLRRALKLKSGSMAAEKWARLSYEKLPLFC

Query:  RGCGRIGHKDSDCNFV
         GCGRIGH+  DC  V
Subjt:  RGCGRIGHKDSDCNFV

A0A5C7HXM5 CCHC-type domain-containing protein5.4e-1735.63Show/hide
Query:  GDKRVSEMEFGFGDFWVRLHNVPPACHTEINARKLGSMLGKFIGWDSEGDKRNRGKFLRLKISIDVRIPLRRALKLKSGSMAAEKWARLSYEKLPLFCRG
        G   V+ M+F   +FW+++HNVP  C TE   R LGS++G     D      N  KFLR+++ IDV IPLRR L++ +     E    L YE+LP FC  
Subjt:  GDKRVSEMEFGFGDFWVRLHNVPPACHTEINARKLGSMLGKFIGWDSEGDKRNRGKFLRLKISIDVRIPLRRALKLKSGSMAAEKWARLSYEKLPLFCRG

Query:  CGRIGHKDSDCNFVVIGE---GLPFPFREELRESSGFFRGEGGSPSRFARRGRGRGRGRGGGLRAEEEEFSVRG
        CG +GH   DC   + G+   G  F +   +R  + F R  G     + RR   RG G    +R +  +  +RG
Subjt:  CGRIGHKDSDCNFVVIGE---GLPFPFREELRESSGFFRGEGGSPSRFARRGRGRGRGRGGGLRAEEEEFSVRG

K3ZNG2 CCHC-type domain-containing protein2.7e-1635.66Show/hide
Query:  GDKRVSEMEFGFGDFWVRLHNVPPACHTEINARKLGSMLGKFIGWDSEGDKRNRGKFLRLKISIDVRIPLRRALKLKSGSMAAEKWARLSYEKLPLFCRG
        G K + E+ F F   W+R+  +P     +  A  +G   GKF+  D E D    G+ LR+K+ +D+R+PLRR + +  G    ++W  + YE LP FC  
Subjt:  GDKRVSEMEFGFGDFWVRLHNVPPACHTEINARKLGSMLGKFIGWDSEGDKRNRGKFLRLKISIDVRIPLRRALKLKSGSMAAEKWARLSYEKLPLFCRG

Query:  CGRIGHKDSDCNFVVIGEGLPFPFREELR
        CG IGH D  C    +G+    PF   LR
Subjt:  CGRIGHKDSDCNFVVIGEGLPFPFREELR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGGGGATAAGCGTGTCTCAGAGATGGAGTTCGGATTTGGGGATTTTTGGGTTAGATTACATAATGTTCCGCCAGCATGCCATACAGAAATTAACGCAAGGAAGTT
GGGTAGTATGTTAGGCAAATTCATAGGCTGGGACAGTGAAGGAGACAAAAGAAATAGGGGAAAATTTTTAAGATTGAAAATTTCCATCGATGTTCGAATTCCATTGCGAA
GGGCGCTGAAGCTGAAAAGTGGATCTATGGCGGCTGAGAAATGGGCAAGACTATCGTACGAAAAACTTCCGTTATTTTGTCGTGGATGTGGAAGAATTGGCCATAAGGAT
TCCGATTGTAATTTTGTGGTGATTGGGGAAGGTCTCCCTTTTCCATTTAGGGAAGAGTTGCGAGAATCATCTGGATTCTTCAGAGGAGAAGGAGGTTCGCCAAGTCGGTT
TGCGAGAAGAGGAAGGGGACGAGGAAGAGGAAGAGGGGGAGGTCTGCGTGCGGAAGAAGAAGAATTTTCAGTGAGAGGAGTTGAACTAGGTTCAAATGTTGGATGTAGGA
GAGAAGATGTGCAGAGGTCGGCATCATTTTCGGTCGAGAGGCGGCGAAATTGCTCTGCTAACGAGTCGCCAGAAATTGTATTGGGAGATGGCGAGAGAAATATGGAAGAA
AGTCAGAAAATGCAGGTGGTTTCGTCTGAATTTGGGAAAACGTCAAGTACAGAGGTTGAAGATGATGGGATGGGTTGCTTGGGTGTTGGAAATGAGCCTGTGAGTGGGCT
TAGGAAAGGTATTATAATTAATGAAAATGTGGGCTTGAAAAATCAAACTAAATGTCATTTATCTATTGGACCTCATGAAGATAAAATTGAGACTTTTCAAGCAGCTGTTA
AAATGGACAGAAAGGATGTTCAATTTAAGGCGGATTTCATGGAACTTGGGCTAGGAAGAAAAATGGATAATTTAAAGTTAATTATGCCATCTAAGGAAGTGCCATCGTTA
GTGCTTCAAAAAAAGCATATAGATAACAGTCCCGCGAAGAATATTGGTGTAGGAGAGGCCAAAAAGTCCATGAAATCTGGGTGGGAGGAAAATGTGGGCAATTTGGAAGT
TGTGTTGGAAAAAAATCGTGAATTGGATAAGGAACCGAAAAGGGTCGGCGGAGGCAAAATTAAAGGGACCATGTCAGCTGCCAAATGGAGATGGAAAGCGAGATTAGGGA
GAAGAGAGGAGTCGTCTCAATTATTGGAAGTGGAGTTTCATGAAGGTGGGCTGACAGCTAACATGGATTGTACTGACTATTTTTCATTTGGTAATAATATTGACTTTAAA
AGCAGTAGTTGCAATATAGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGGGGATAAGCGTGTCTCAGAGATGGAGTTCGGATTTGGGGATTTTTGGGTTAGATTACATAATGTTCCGCCAGCATGCCATACAGAAATTAACGCAAGGAAGTT
GGGTAGTATGTTAGGCAAATTCATAGGCTGGGACAGTGAAGGAGACAAAAGAAATAGGGGAAAATTTTTAAGATTGAAAATTTCCATCGATGTTCGAATTCCATTGCGAA
GGGCGCTGAAGCTGAAAAGTGGATCTATGGCGGCTGAGAAATGGGCAAGACTATCGTACGAAAAACTTCCGTTATTTTGTCGTGGATGTGGAAGAATTGGCCATAAGGAT
TCCGATTGTAATTTTGTGGTGATTGGGGAAGGTCTCCCTTTTCCATTTAGGGAAGAGTTGCGAGAATCATCTGGATTCTTCAGAGGAGAAGGAGGTTCGCCAAGTCGGTT
TGCGAGAAGAGGAAGGGGACGAGGAAGAGGAAGAGGGGGAGGTCTGCGTGCGGAAGAAGAAGAATTTTCAGTGAGAGGAGTTGAACTAGGTTCAAATGTTGGATGTAGGA
GAGAAGATGTGCAGAGGTCGGCATCATTTTCGGTCGAGAGGCGGCGAAATTGCTCTGCTAACGAGTCGCCAGAAATTGTATTGGGAGATGGCGAGAGAAATATGGAAGAA
AGTCAGAAAATGCAGGTGGTTTCGTCTGAATTTGGGAAAACGTCAAGTACAGAGGTTGAAGATGATGGGATGGGTTGCTTGGGTGTTGGAAATGAGCCTGTGAGTGGGCT
TAGGAAAGGTATTATAATTAATGAAAATGTGGGCTTGAAAAATCAAACTAAATGTCATTTATCTATTGGACCTCATGAAGATAAAATTGAGACTTTTCAAGCAGCTGTTA
AAATGGACAGAAAGGATGTTCAATTTAAGGCGGATTTCATGGAACTTGGGCTAGGAAGAAAAATGGATAATTTAAAGTTAATTATGCCATCTAAGGAAGTGCCATCGTTA
GTGCTTCAAAAAAAGCATATAGATAACAGTCCCGCGAAGAATATTGGTGTAGGAGAGGCCAAAAAGTCCATGAAATCTGGGTGGGAGGAAAATGTGGGCAATTTGGAAGT
TGTGTTGGAAAAAAATCGTGAATTGGATAAGGAACCGAAAAGGGTCGGCGGAGGCAAAATTAAAGGGACCATGTCAGCTGCCAAATGGAGATGGAAAGCGAGATTAGGGA
GAAGAGAGGAGTCGTCTCAATTATTGGAAGTGGAGTTTCATGAAGGTGGGCTGACAGCTAACATGGATTGTACTGACTATTTTTCATTTGGTAATAATATTGACTTTAAA
AGCAGTAGTTGCAATATAGTGTAG
Protein sequenceShow/hide protein sequence
MAGDKRVSEMEFGFGDFWVRLHNVPPACHTEINARKLGSMLGKFIGWDSEGDKRNRGKFLRLKISIDVRIPLRRALKLKSGSMAAEKWARLSYEKLPLFCRGCGRIGHKD
SDCNFVVIGEGLPFPFREELRESSGFFRGEGGSPSRFARRGRGRGRGRGGGLRAEEEEFSVRGVELGSNVGCRREDVQRSASFSVERRRNCSANESPEIVLGDGERNMEE
SQKMQVVSSEFGKTSSTEVEDDGMGCLGVGNEPVSGLRKGIIINENVGLKNQTKCHLSIGPHEDKIETFQAAVKMDRKDVQFKADFMELGLGRKMDNLKLIMPSKEVPSL
VLQKKHIDNSPAKNIGVGEAKKSMKSGWEENVGNLEVVLEKNRELDKEPKRVGGGKIKGTMSAAKWRWKARLGRREESSQLLEVEFHEGGLTANMDCTDYFSFGNNIDFK
SSSCNIV