; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0009986 (gene) of Chayote v1 genome

Gene IDSed0009986
OrganismSechium edule (Chayote v1)
Descriptionhistone H4
Genome locationLG03:2112960..2116482
RNA-Seq ExpressionSed0009986
SyntenySed0009986
Gene Ontology termsGO:0006334 - nucleosome assembly (biological process)
GO:0006352 - DNA-templated transcription, initiation (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005654 - nucleoplasm (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR001951 - Histone H4
IPR009072 - Histone-fold
IPR019809 - Histone H4, conserved site
IPR035425 - CENP-T/Histone H4, histone fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646972.1 hypothetical protein Csa_021021 [Cucumis sativus]1.1e-4466.67Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT-FG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT +G
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT-FG

Query:  TALEYVLTWNGKLDSLQGTRHSDRSFL----QHSNALDQIRHVPTNYSHFACAMSA-YPF--TTNLAIPLHLII
          + ++   +G    L+G + S R FL    Q  +   ++ HV   +   AC+    +P+  TT++    H II
Subjt:  TALEYVLTWNGKLDSLQGTRHSDRSFL----QHSNALDQIRHVPTNYSHFACAMSA-YPF--TTNLAIPLHLII

KAG6411252.1 hypothetical protein SASPL_129330 [Salvia splendens]1.4e-4489.29Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTFGT
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT   
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTFGT

Query:  ALEYVLTWNGKL
          ++ + W G L
Subjt:  ALEYVLTWNGKL

KAG6485895.1 hypothetical protein ZIOFF_054462 [Zingiber officinale]1.4e-4485.95Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT---
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT   
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT---

Query:  FGTALEYVLTWNGKLDSLQGT
        FG  L  +    G+LD ++ T
Subjt:  FGTALEYVLTWNGKLDSLQGT

XP_020580277.1 uncharacterized protein LOC110024573 [Phalaenopsis equestris]6.2e-4588.7Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT---
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT   
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT---

Query:  FGTALEYVLTWNGKL
        FG  L ++  W+  L
Subjt:  FGTALEYVLTWNGKL

XP_022133641.1 uncharacterized protein LOC111006180 [Momordica charantia]1.4e-4484.68Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT---
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT   
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT---

Query:  FGTALEYVLTWNGKL-DSLQGTRH
        FG +  Y  T + +L DS     H
Subjt:  FGTALEYVLTWNGKL-DSLQGTRH

TrEMBL top hitse value%identityAlignment
A0A0E0ECW1 Histone H48.7e-4582.54Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT---
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT   
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT---

Query:  FGTALEYVLTWNGKLDSLQGTRHSDR
        FG  +  +   N   D++  T H+ R
Subjt:  FGTALEYVLTWNGKLDSLQGTRHSDR

A0A4D9BMK5 Histone H46.6e-4589.29Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTFGT
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT   
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTFGT

Query:  ALEYVLTWNGKL
          ++ + W G L
Subjt:  ALEYVLTWNGKL

A0A553NPY7 Histone H41.1e-4478.79Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT---
        M+GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT   
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT---

Query:  FGTALEYVLTWNGKLDSLQG--TRHSDRSFLQ
        FG  L  +++  GK   ++G     S+R+ LQ
Subjt:  FGTALEYVLTWNGKLDSLQG--TRHSDRSFLQ

A0A6J1BVP5 Histone H46.6e-4584.68Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT---
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT   
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT---

Query:  FGTALEYVLTWNGKL-DSLQGTRH
        FG +  Y  T + +L DS     H
Subjt:  FGTALEYVLTWNGKL-DSLQGTRH

A0A6P5LF57 Histone H41.5e-4487.72Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT---
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT   
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT---

Query:  FGTALEYVLTWNGK
        FG  L  +++  GK
Subjt:  FGTALEYVLTWNGK

SwissProt top hitse value%identityAlignment
P59259 Histone H44.4e-46100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT

P62785 Histone H4 variant TH0114.4e-46100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT

Q6LAF3 Histone H44.4e-46100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT

Q6PMI5 Histone H44.4e-46100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT

Q6WZ83 Histone H44.4e-46100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT

Arabidopsis top hitse value%identityAlignment
AT1G07660.1 Histone superfamily protein3.2e-47100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT

AT1G07820.1 Histone superfamily protein3.2e-47100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT

AT1G07820.2 Histone superfamily protein3.2e-47100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT

AT2G28740.1 histone H43.2e-47100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT

AT3G45930.1 Histone superfamily protein3.2e-47100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGGCCGTGGAAAAGGAGGCAAGGGATTGGGAAAGGGCGGAGCAAAGCGTCACAGGAAGGTGTTGAGGGACAACATCCAAGGCATTACCAAGCCTGCAATTCGGCG
ATTGGCTCGCAGAGGCGGAGTGAAGCGAATCAGCGGCTTGATCTATGAGGAAACCAGAGGCGTGTTGAAGATCTTTCTTGAGAACGTGATTCGCGATGCGGTGACCTACA
CCGAGCACGCTCGGAGGAAGACGGTCACCGCCATGGACGTGGTCTATGCGCTCAAGAGGCAGGGACGGACCTTTGGTACTGCACTCGAATATGTTTTGACTTGGAATGGA
AAGCTGGATTCCTTGCAAGGTACAAGGCACTCTGATCGATCCTTTTTACAGCATTCCAATGCTCTCGACCAGATTCGCCATGTGCCGACTAACTACTCCCACTTTGCATG
TGCAATGTCCGCATATCCTTTTACCACCAATCTTGCGATACCGCTCCACTTGATCATCATTGTTGCGCTTGATCTTATATACCCATTTGTTACCAATGGGCTTTCTTCCC
TTATTGGTCGCTTCGCGCGAAATGATTTGTCCAAGCCTGCAGCTCCTAACATTGCTCTTGTTCTCTCTAACAAGGTTCTATTCATCCGCTCTGCCACTCCATTTCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGGCCGTGGAAAAGGAGGCAAGGGATTGGGAAAGGGCGGAGCAAAGCGTCACAGGAAGGTGTTGAGGGACAACATCCAAGGCATTACCAAGCCTGCAATTCGGCG
ATTGGCTCGCAGAGGCGGAGTGAAGCGAATCAGCGGCTTGATCTATGAGGAAACCAGAGGCGTGTTGAAGATCTTTCTTGAGAACGTGATTCGCGATGCGGTGACCTACA
CCGAGCACGCTCGGAGGAAGACGGTCACCGCCATGGACGTGGTCTATGCGCTCAAGAGGCAGGGACGGACCTTTGGTACTGCACTCGAATATGTTTTGACTTGGAATGGA
AAGCTGGATTCCTTGCAAGGTACAAGGCACTCTGATCGATCCTTTTTACAGCATTCCAATGCTCTCGACCAGATTCGCCATGTGCCGACTAACTACTCCCACTTTGCATG
TGCAATGTCCGCATATCCTTTTACCACCAATCTTGCGATACCGCTCCACTTGATCATCATTGTTGCGCTTGATCTTATATACCCATTTGTTACCAATGGGCTTTCTTCCC
TTATTGGTCGCTTCGCGCGAAATGATTTGTCCAAGCCTGCAGCTCCTAACATTGCTCTTGTTCTCTCTAACAAGGTTCTATTCATCCGCTCTGCCACTCCATTTCTTTGA
Protein sequenceShow/hide protein sequence
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTFGTALEYVLTWNG
KLDSLQGTRHSDRSFLQHSNALDQIRHVPTNYSHFACAMSAYPFTTNLAIPLHLIIIVALDLIYPFVTNGLSSLIGRFARNDLSKPAAPNIALVLSNKVLFIRSATPFL